Wall clock time and date at job start Tue Mar 31 2020 22:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00178 * 2 1 4 4 C 1.52993 * 109.47017 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46231 * 299.99534 * 4 3 2 6 6 N 1.46509 * 109.46472 * 60.03090 * 5 4 3 7 7 C 1.34777 * 119.99355 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00267 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47353 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.53777 * 113.61541 * 85.86264 * 11 10 9 13 13 C 1.54046 * 86.98585 * 140.02115 * 12 11 10 14 14 C 1.53781 * 113.61305 * 183.47189 * 11 10 9 15 15 C 1.53035 * 109.45310 * 59.96654 * 4 3 2 16 16 C 1.53191 * 109.31608 * 181.37672 * 15 4 3 17 17 N 1.46927 * 108.77694 * 305.36651 * 16 15 4 18 18 C 1.36935 * 120.63098 * 233.58353 * 17 16 15 19 19 H 1.08006 * 119.99801 * 27.69742 * 18 17 16 20 20 C 1.38813 * 120.00037 * 207.68871 * 18 17 16 21 21 N 1.31618 * 119.99983 * 17.36635 * 20 18 17 22 22 Si 1.86801 * 119.99867 * 197.36776 * 20 18 17 23 23 H 1.48502 * 109.47100 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47022 * 119.99830 * 22 20 18 25 25 H 1.48493 * 109.47158 * 239.99978 * 22 20 18 26 26 C 1.46924 * 118.74011 * 53.60373 * 17 16 15 27 27 C 1.53051 * 109.45867 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47049 * 300.00071 * 1 2 3 29 29 H 1.09000 * 109.47393 * 60.00192 * 1 2 3 30 30 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47014 * 59.99869 * 3 2 1 32 32 H 1.09005 * 109.47018 * 300.00468 * 3 2 1 33 33 H 1.09000 * 109.47083 * 300.03340 * 5 4 3 34 34 H 1.08998 * 109.47733 * 180.02562 * 5 4 3 35 35 H 0.96996 * 120.00239 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47083 * 60.00056 * 9 7 6 37 37 H 1.09008 * 109.46825 * 300.00222 * 9 7 6 38 38 H 1.09000 * 109.46941 * 60.00017 * 10 9 7 39 39 H 1.08997 * 109.46661 * 300.00125 * 10 9 7 40 40 H 1.09005 * 112.84708 * 314.66745 * 11 10 9 41 41 H 1.09002 * 113.61418 * 254.61502 * 12 11 10 42 42 H 1.09002 * 113.61503 * 25.51534 * 12 11 10 43 43 H 1.09000 * 113.61925 * 220.02302 * 13 12 11 44 44 H 1.08997 * 113.61888 * 89.11465 * 13 12 11 45 45 H 1.08996 * 113.61194 * 334.48242 * 14 11 10 46 46 H 1.08995 * 113.61579 * 105.30191 * 14 11 10 47 47 H 1.08998 * 109.49905 * 301.32850 * 15 4 3 48 48 H 1.09002 * 109.50232 * 61.42518 * 15 4 3 49 49 H 1.08998 * 109.58856 * 185.57360 * 16 15 4 50 50 H 1.09002 * 109.70091 * 65.21972 * 16 15 4 51 51 H 0.96999 * 119.99763 * 179.97438 * 21 20 18 52 52 H 1.08995 * 109.59077 * 186.60391 * 26 17 16 53 53 H 1.08998 * 109.70403 * 66.25150 * 26 17 16 54 54 H 1.08998 * 109.49465 * 298.58032 * 27 4 3 55 55 H 1.08999 * 109.49494 * 58.64059 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9871 0.4251 1.2484 6 7 3.3916 -0.9135 1.2479 7 6 3.6505 -1.7665 2.2588 8 8 4.3768 -1.4261 3.1685 9 6 3.0384 -3.1436 2.2581 10 6 3.4899 -3.9031 3.5072 11 6 2.8690 -5.3014 3.5061 12 6 3.6852 -6.3373 2.7153 13 6 3.3530 -7.3369 3.8393 14 6 3.1935 -6.1205 4.7666 15 6 3.9859 0.4245 -1.2502 16 6 5.5104 0.2753 -1.2304 17 7 6.1141 1.6068 -1.0836 18 6 7.0597 2.0458 -1.9714 19 1 7.0628 1.6734 -2.9852 20 6 8.0142 2.9696 -1.5684 21 7 8.2372 3.1689 -0.2866 22 14 8.9822 3.9299 -2.8452 23 1 8.5455 3.5245 -4.2054 24 1 8.7392 5.3832 -2.6605 25 1 10.4308 3.6460 -2.6847 26 6 5.6842 2.4581 0.0340 27 6 4.1577 2.5828 0.0000 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.6653 0.9657 2.1385 34 1 5.0737 0.3393 1.2484 35 1 2.8110 -1.1858 0.5202 36 1 3.3610 -3.6841 1.3682 37 1 1.9517 -3.0581 2.2573 38 1 3.1677 -3.3627 4.3973 39 1 4.5766 -3.9884 3.5074 40 1 1.8092 -5.2937 3.2512 41 1 3.2447 -6.5980 1.7530 42 1 4.7459 -6.0960 2.6449 43 1 4.1874 -7.9846 4.1085 44 1 2.4257 -7.8857 3.6757 45 1 4.1199 -5.8200 5.2559 46 1 2.3567 -6.2050 5.4598 47 1 3.5239 -0.5626 -1.2619 48 1 3.6861 0.9776 -2.1404 49 1 5.8455 -0.1769 -2.1638 50 1 5.8071 -0.3548 -0.3919 51 1 8.9044 3.8142 -0.0050 52 1 6.1338 3.4460 -0.0650 53 1 5.9931 2.0090 0.9780 54 1 3.8562 3.1156 -0.9018 55 1 3.8174 3.1320 0.8779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162194567.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:09 Heat of formation + Delta-G solvation = -74.709292 kcal Electronic energy + Delta-G solvation = -31226.222763 eV Core-core repulsion = 27263.165439 eV Total energy + Delta-G solvation = -3963.057324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.32320 -40.16124 -39.38450 -38.26887 -36.07897 -34.48712 -33.61128 -32.82390 -31.49461 -28.98624 -28.33130 -27.09560 -26.45756 -25.98131 -25.49883 -23.88372 -22.86084 -22.52836 -21.11983 -20.26111 -19.82427 -18.68855 -17.72161 -17.19725 -16.91198 -16.89678 -16.75329 -16.44148 -16.33575 -16.02166 -15.50608 -15.39868 -15.20695 -15.05245 -14.78546 -14.36607 -14.30434 -14.08549 -13.66266 -13.56342 -13.32470 -13.26990 -13.05448 -12.96632 -12.81071 -12.63484 -12.56099 -12.43683 -12.23961 -12.08595 -11.95928 -11.87281 -11.84291 -11.48595 -11.38067 -11.25077 -11.11013 -11.08710 -10.94725 -10.66719 -10.52325 -10.49239 -9.85056 -8.66319 -7.86611 -5.31754 1.45580 1.47123 1.58023 1.80066 2.32510 2.51411 2.88121 3.28127 3.66360 3.71280 3.74346 3.80570 3.82236 3.94515 3.98468 4.03270 4.08793 4.29530 4.32296 4.43489 4.47393 4.52430 4.57753 4.62979 4.68262 4.68960 4.72014 4.73072 4.77615 4.83969 4.90769 4.91787 4.94119 4.95118 4.97840 5.02553 5.07498 5.13322 5.17828 5.22200 5.25758 5.27937 5.35444 5.38510 5.47550 5.50203 5.64683 5.65171 5.72103 5.80121 6.26318 6.39430 6.84116 7.15305 7.49434 7.87090 8.39040 9.19751 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.002760 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.544032 B =10141.191120 C =11502.451057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.083 3.917 4 C -0.050 4.050 5 C 0.141 3.859 6 N -0.699 5.699 7 C 0.495 3.505 8 O -0.604 6.604 9 C -0.125 4.125 10 C -0.090 4.090 11 C -0.105 4.105 12 C -0.142 4.142 13 C -0.139 4.139 14 C -0.144 4.144 15 C -0.101 4.101 16 C 0.141 3.859 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.068 0.932 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.289 1.289 25 H -0.296 1.296 26 C 0.178 3.822 27 C -0.116 4.116 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.419 0.581 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.002 0.998 51 H 0.249 0.751 52 H 0.054 0.946 53 H -0.009 1.009 54 H 0.069 0.931 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.272 -14.977 2.797 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.006 3.994 4 C -0.050 4.050 5 C 0.017 3.983 6 N -0.356 5.356 7 C 0.283 3.717 8 O -0.486 6.486 9 C -0.164 4.164 10 C -0.128 4.128 11 C -0.123 4.123 12 C -0.179 4.179 13 C -0.176 4.176 14 C -0.181 4.181 15 C -0.140 4.140 16 C 0.016 3.984 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.085 0.915 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.216 1.216 25 H -0.223 1.223 26 C 0.052 3.948 27 C -0.156 4.156 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.262 0.738 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.020 0.980 51 H 0.058 0.942 52 H 0.073 0.927 53 H 0.009 0.991 54 H 0.087 0.913 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.570 -14.812 3.439 25.581 hybrid contribution 1.047 1.121 -0.422 1.591 sum -19.523 -13.691 3.016 24.035 Atomic orbital electron populations 1.22911 0.79301 1.04007 1.00499 1.87481 1.21359 1.27908 1.95497 1.22509 0.90956 0.84829 1.01087 1.20651 0.94097 0.95711 0.94569 1.21115 0.96755 0.83513 0.96942 1.46223 1.49916 1.13784 1.25661 1.21593 0.80516 0.88453 0.81140 1.90673 1.40282 1.79317 1.38334 1.21652 1.03087 0.90212 1.01490 1.21252 0.99752 0.95207 0.96588 1.22591 1.00498 0.91945 0.97250 1.23053 0.99905 0.96619 0.98374 1.22862 1.02229 0.96117 0.96417 1.22960 1.01724 0.96820 0.96615 1.21804 0.95414 1.00319 0.96466 1.21046 0.93112 0.86497 0.97735 1.44307 1.44901 1.12898 1.30966 1.19560 1.05625 1.22029 0.91693 0.91458 1.25818 0.98390 1.03268 0.97405 1.70219 1.35664 1.37268 1.15187 0.85207 0.77652 0.78252 0.79334 1.18882 1.21576 1.22296 1.20559 0.90866 0.95279 0.88095 1.21976 0.96771 0.94890 1.01948 0.93937 0.93274 0.87866 0.92678 0.91678 0.93474 0.94549 0.73786 0.87361 0.86260 0.92810 0.93674 0.87403 0.90413 0.91330 0.91672 0.88962 0.91309 0.90827 0.90052 0.91704 0.93146 0.98028 0.94223 0.92726 0.99088 0.91254 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.79 6.73 -148.98 -1.00 -8.79 16 3 C 0.08 1.86 4.80 71.98 0.35 2.20 16 4 C -0.05 -1.51 0.51 -52.16 -0.03 -1.54 16 5 C 0.14 4.93 3.81 86.38 0.33 5.25 16 6 N -0.70 -20.08 4.62 -463.04 -2.14 -22.22 16 7 C 0.49 15.18 7.83 87.66 0.69 15.87 16 8 O -0.60 -24.93 15.98 -3.02 -0.05 -24.98 16 9 C -0.12 -2.47 5.70 29.85 0.17 -2.30 16 10 C -0.09 -1.92 4.33 30.59 0.13 -1.79 16 11 C -0.10 -1.58 3.64 -10.27 -0.04 -1.62 16 12 C -0.14 -2.08 7.65 31.21 0.24 -1.85 16 13 C -0.14 -1.81 8.09 31.21 0.25 -1.55 16 14 C -0.14 -2.17 7.64 31.12 0.24 -1.93 16 15 C -0.10 -3.22 4.59 30.67 0.14 -3.08 16 16 C 0.14 5.98 6.04 86.36 0.52 6.50 16 17 N -0.61 -30.86 2.99 -699.10 -2.09 -32.95 16 18 C -0.26 -14.41 9.59 84.03 0.81 -13.61 16 19 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 20 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 21 N -0.94 -57.06 11.19 21.65 0.24 -56.82 16 22 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 C 0.18 8.69 4.84 86.36 0.42 9.11 16 27 C -0.12 -4.17 4.91 30.68 0.15 -4.02 16 28 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.62 4.99 -2.39 -0.01 1.61 16 35 H 0.42 9.90 4.71 -92.71 -0.44 9.46 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 39 H 0.04 1.18 7.83 -2.39 -0.02 1.16 16 40 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.19 7.92 -2.39 -0.02 1.17 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 2.19 6.49 -2.39 -0.02 2.18 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 50 H 0.00 0.08 6.70 -2.39 -0.02 0.07 16 51 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 52 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 53 H -0.01 -0.48 6.70 -2.39 -0.02 -0.50 16 54 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 55 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -72.95 414.28 3.43 -69.52 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.41 Total: 24.04 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.03 Total: 4.62 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.99 Total: -111.99 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.05 Total: -33.77 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.95 3.43 -69.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162194567.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.184 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds