Wall clock time and date at job start Tue Mar 31 2020 22:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00471 * 2 1 4 4 H 1.08996 * 109.46893 * 330.00365 * 3 2 1 5 5 C 1.52998 * 109.46990 * 90.00052 * 3 2 1 6 6 C 1.53004 * 109.47186 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46462 * 299.99999 * 6 5 3 8 8 C 1.52998 * 109.47419 * 60.00144 * 7 6 5 9 9 H 1.08997 * 109.47441 * 59.99822 * 8 7 6 10 10 C 1.52999 * 109.46922 * 179.97438 * 8 7 6 11 11 C 1.50698 * 109.47104 * 294.99423 * 10 8 7 12 12 O 1.21284 * 120.00051 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00195 * 180.02562 * 11 10 8 14 14 C 1.46500 * 120.00240 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47150 * 179.97438 * 14 13 11 16 16 C 1.52990 * 109.47016 * 185.10201 * 15 14 13 17 17 C 1.53000 * 115.55113 * 295.46312 * 16 15 14 18 18 N 1.46503 * 109.47059 * 297.23842 * 17 16 15 19 19 C 1.36940 * 119.99791 * 176.65665 * 18 17 16 20 20 H 1.08000 * 120.00041 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99724 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00204 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00169 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.46913 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47058 * 119.99847 * 23 21 19 26 26 H 1.48495 * 109.47347 * 240.00638 * 23 21 19 27 27 C 1.53006 * 117.49903 * 149.79581 * 16 15 14 28 28 C 1.52995 * 117.50121 * 81.13413 * 16 15 14 29 29 C 1.52995 * 109.46956 * 209.99987 * 3 2 1 30 30 H 1.09007 * 109.47194 * 300.00296 * 1 2 3 31 31 H 1.09001 * 109.47459 * 59.99580 * 1 2 3 32 32 H 1.08994 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47441 * 60.00056 * 5 3 2 34 34 H 1.09007 * 109.47156 * 300.00415 * 5 3 2 35 35 H 1.08999 * 109.47178 * 180.02562 * 6 5 3 36 36 H 1.08997 * 109.47265 * 59.99482 * 6 5 3 37 37 H 1.08997 * 109.46959 * 299.99671 * 7 6 5 38 38 H 1.09004 * 109.46877 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.47213 * 174.99861 * 10 8 7 40 40 H 1.08994 * 109.47623 * 55.00145 * 10 8 7 41 41 H 0.97006 * 119.99495 * 0.02562 * 13 11 10 42 42 H 1.09005 * 109.46637 * 60.00239 * 14 13 11 43 43 H 1.08996 * 109.46752 * 300.00356 * 14 13 11 44 44 H 1.08998 * 109.47065 * 305.10263 * 15 14 13 45 45 H 1.09005 * 109.46797 * 65.09909 * 15 14 13 46 46 H 1.09002 * 109.47327 * 57.24185 * 17 16 15 47 47 H 1.09008 * 109.47070 * 177.24518 * 17 16 15 48 48 H 0.96994 * 120.00084 * 356.66889 * 18 17 16 49 49 H 0.97001 * 120.00279 * 179.97438 * 22 21 19 50 50 H 1.09001 * 117.49723 * 359.97438 * 27 16 15 51 51 H 1.08997 * 117.50268 * 145.02278 * 27 16 15 52 52 H 1.08999 * 117.50675 * 214.98030 * 28 16 15 53 53 H 1.09004 * 117.50125 * 359.97438 * 28 16 15 54 54 H 1.08999 * 109.46982 * 60.00358 * 29 3 2 55 55 H 1.08996 * 109.47628 * 299.99928 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 2.8396 3.1692 1.4425 7 6 4.1882 3.1274 0.7211 8 6 3.9808 2.6615 -0.7214 9 1 3.3153 3.3553 -1.2352 10 6 5.3293 2.6203 -1.4430 11 6 5.8840 4.0173 -1.5511 12 8 5.2622 4.9537 -1.0955 13 7 7.0711 4.2263 -2.1542 14 6 7.6106 5.5843 -2.2589 15 6 8.9591 5.5431 -2.9805 16 6 9.5818 6.9405 -2.9778 17 6 8.8116 8.0077 -3.7581 18 7 8.7641 7.6377 -5.1748 19 6 8.0644 8.4119 -6.0616 20 1 7.5479 9.2954 -5.7166 21 6 8.0190 8.0611 -7.4038 22 7 8.6481 6.9841 -7.8242 23 14 7.0652 9.1174 -8.6136 24 1 6.4530 10.2635 -7.8945 25 1 7.9872 9.6262 -9.6607 26 1 5.9975 8.3029 -9.2474 27 6 11.1091 7.0335 -2.9732 28 6 10.3166 7.3842 -1.7113 29 6 3.3589 1.2631 -0.7212 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 2.8830 1.0774 1.9563 34 1 1.2569 1.8013 1.9564 35 1 2.9879 3.5009 2.4702 36 1 2.1741 3.8630 0.9288 37 1 4.8537 2.4337 1.2348 38 1 4.6311 4.1234 0.7207 39 1 5.1946 2.2046 -2.4416 40 1 6.0235 1.9963 -0.8804 41 1 7.5683 3.4774 -2.5189 42 1 7.7460 5.9994 -1.2601 43 1 6.9162 6.2087 -2.8209 44 1 9.6243 4.8479 -2.4682 45 1 8.8109 5.2132 -4.0088 46 1 7.7966 8.0816 -3.3676 47 1 9.3133 8.9695 -3.6504 48 1 9.2282 6.8444 -5.4847 49 1 8.6161 6.7387 -8.7621 50 1 11.6701 6.0989 -2.9716 51 1 11.5650 7.8550 -3.5255 52 1 10.2516 8.4363 -1.4340 53 1 10.3560 6.6805 -0.8797 54 1 3.2111 0.9312 -1.7489 55 1 4.0242 0.5692 -0.2075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165441125.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:31 Heat of formation + Delta-G solvation = -100.825849 kcal Electronic energy + Delta-G solvation = -29546.404935 eV Core-core repulsion = 25582.215113 eV Total energy + Delta-G solvation = -3964.189822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12950 -40.01048 -39.44995 -37.50738 -36.02542 -35.70455 -33.48906 -32.79242 -31.31816 -30.97947 -28.21393 -27.62966 -27.30652 -24.65300 -24.52494 -23.36390 -23.09285 -22.50293 -21.34671 -20.78141 -19.92082 -19.01939 -17.89506 -17.50851 -16.97541 -16.82966 -16.61633 -16.51446 -16.17011 -16.03001 -15.79105 -15.54503 -15.22588 -15.01790 -14.68491 -14.56261 -14.35394 -14.12837 -13.86189 -13.82003 -13.31889 -13.12649 -13.06108 -12.93942 -12.83225 -12.71854 -12.56395 -12.36515 -12.28410 -12.14260 -11.95810 -11.94663 -11.93760 -11.83441 -11.53217 -11.37204 -11.30067 -11.11193 -10.91068 -10.69061 -10.51733 -10.38000 -10.00352 -8.97839 -7.96057 -5.23221 1.44925 1.45283 1.55320 1.72557 2.23646 2.53125 2.80918 2.92102 3.36887 3.64772 3.74835 3.79786 3.82842 3.89597 4.00714 4.08203 4.09798 4.11669 4.20985 4.26679 4.31372 4.45351 4.49002 4.50210 4.51938 4.52396 4.55895 4.64062 4.66824 4.71484 4.74985 4.84032 4.84209 4.86878 4.95454 4.99320 5.04924 5.07355 5.08934 5.19720 5.23547 5.25318 5.28418 5.32582 5.34263 5.37240 5.43765 5.47917 5.54343 5.58004 6.26794 6.28238 6.63870 7.33853 7.34989 8.10109 8.36096 9.27332 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.002117 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.880224 B =13225.355734 C =14852.934074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.086 3.914 4 H 0.056 0.944 5 C -0.133 4.133 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.064 4.064 9 H 0.056 0.944 10 C -0.129 4.129 11 C 0.504 3.496 12 O -0.581 6.581 13 N -0.721 5.721 14 C 0.135 3.865 15 C -0.073 4.073 16 C -0.142 4.142 17 C 0.187 3.813 18 N -0.734 5.734 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.073 4.073 22 N -0.965 5.965 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.293 1.293 27 C -0.164 4.164 28 C -0.149 4.149 29 C -0.104 4.104 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.414 0.586 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.377 0.623 49 H 0.251 0.749 50 H 0.109 0.891 51 H 0.079 0.921 52 H 0.094 0.906 53 H 0.117 0.883 54 H 0.072 0.928 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -15.868 20.860 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.029 3.971 4 H 0.075 0.925 5 C -0.170 4.170 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.083 4.083 9 H 0.075 0.925 10 C -0.169 4.169 11 C 0.293 3.707 12 O -0.461 6.461 13 N -0.373 5.373 14 C 0.011 3.989 15 C -0.111 4.111 16 C -0.143 4.143 17 C 0.060 3.940 18 N -0.377 5.377 19 C -0.376 4.376 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.615 5.615 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.220 1.220 27 C -0.201 4.201 28 C -0.187 4.187 29 C -0.142 4.142 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.128 0.872 51 H 0.098 0.902 52 H 0.113 0.887 53 H 0.135 0.865 54 H 0.091 0.909 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.086 -15.204 21.142 27.267 hybrid contribution -0.421 0.644 -1.477 1.666 sum -8.506 -14.560 19.665 25.904 Atomic orbital electron populations 1.22937 0.80063 1.03669 1.00479 1.87860 1.20922 1.28435 1.95221 1.22174 0.95038 0.83970 0.95930 0.92547 1.21975 1.01426 0.96958 0.96691 1.21434 0.96572 0.96246 1.00813 1.21691 0.97545 1.01867 0.94555 1.20779 0.95096 0.96131 0.96320 0.92498 1.21758 0.98244 0.92396 1.04479 1.21341 0.80365 0.92500 0.76536 1.90662 1.59861 1.46332 1.49271 1.46014 1.21861 1.10046 1.59426 1.21051 0.94488 0.83499 0.99859 1.21065 0.94878 0.94708 1.00456 1.21426 0.94545 0.96106 1.02200 1.20247 0.96044 0.94137 0.83531 1.42419 1.61461 1.30711 1.03107 1.19622 1.23299 1.05072 0.89597 0.91345 1.25485 1.02658 0.99615 0.98760 1.69802 1.49044 1.27726 1.14976 0.85139 0.77789 0.78167 0.79083 1.19525 1.21780 1.21971 1.23001 0.92391 1.03475 1.01277 1.23084 1.01883 1.02635 0.91052 1.21575 0.95157 0.96322 1.01122 0.93448 0.93719 0.88457 0.90983 0.91603 0.91100 0.92885 0.91151 0.92190 0.87045 0.85946 0.74938 0.91595 0.94953 0.88624 0.92571 0.96709 0.96991 0.79071 0.93988 0.87231 0.90237 0.88738 0.86502 0.90932 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -7.26 10.35 -148.98 -1.54 -8.80 16 3 C 0.09 1.43 2.61 30.59 0.08 1.51 16 4 H 0.06 0.96 7.79 -2.39 -0.02 0.94 16 5 C -0.13 -2.01 5.54 30.59 0.17 -1.84 16 6 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 7 C -0.12 -2.25 4.95 30.59 0.15 -2.09 16 8 C -0.06 -1.17 1.84 -10.78 -0.02 -1.19 16 9 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16 10 C -0.13 -2.10 5.18 29.85 0.15 -1.95 16 11 C 0.50 12.71 7.55 87.66 0.66 13.38 16 12 O -0.58 -19.76 13.96 -3.04 -0.04 -19.80 16 13 N -0.72 -16.88 5.56 -463.05 -2.57 -19.45 16 14 C 0.14 3.93 5.39 86.38 0.47 4.39 16 15 C -0.07 -2.03 5.10 30.59 0.16 -1.87 16 16 C -0.14 -4.39 1.57 -52.18 -0.08 -4.48 16 17 C 0.19 7.75 5.89 86.38 0.51 8.26 16 18 N -0.73 -37.77 5.44 -343.43 -1.87 -39.64 16 19 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 22 N -0.96 -59.04 13.06 21.65 0.28 -58.76 16 23 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 27 C -0.16 -4.48 9.94 30.62 0.30 -4.17 16 28 C -0.15 -3.55 9.95 30.62 0.30 -3.25 16 29 C -0.10 -1.61 4.86 30.61 0.15 -1.46 16 30 H 0.05 0.51 7.87 -2.38 -0.02 0.49 16 31 H 0.04 0.52 8.09 -2.39 -0.02 0.50 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.91 7.87 -2.38 -0.02 0.89 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.49 5.95 -2.38 -0.01 1.47 16 39 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.41 7.00 8.47 -92.70 -0.79 6.22 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.03 1.22 7.27 -2.39 -0.02 1.20 16 44 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 45 H 0.06 1.88 7.53 -2.38 -0.02 1.86 16 46 H 0.02 0.65 7.17 -2.39 -0.02 0.64 16 47 H 0.01 0.52 8.11 -2.38 -0.02 0.50 16 48 H 0.38 20.28 7.11 -92.71 -0.66 19.62 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 51 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 54 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 55 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.53 431.24 1.41 -71.12 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.59 Total: 38.10 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 5.72 Total: -11.90 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -4.16 Total: -117.85 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.58 Total: -28.60 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -72.53 1.41 -71.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165441125.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.708 kcal (2) G-P(sol) polarization free energy of solvation -72.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds