Wall clock time and date at job start Tue Mar 31 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99762 * 2 1 4 4 H 1.08998 * 109.46932 * 329.99625 * 3 2 1 5 5 C 1.53001 * 109.47164 * 89.99720 * 3 2 1 6 6 C 1.53001 * 109.47199 * 60.00082 * 5 3 2 7 7 C 1.53005 * 109.47097 * 59.99713 * 6 5 3 8 8 C 1.52995 * 109.47144 * 299.99952 * 7 6 5 9 9 H 1.08995 * 109.47629 * 300.00217 * 8 7 6 10 10 C 1.53003 * 109.46876 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.46985 * 65.00430 * 10 8 7 12 12 O 1.21282 * 119.99986 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99947 * 179.97438 * 11 10 8 14 14 C 1.46504 * 119.99776 * 175.06562 * 13 11 10 15 15 C 1.53007 * 109.46701 * 184.97535 * 14 13 11 16 16 C 1.52997 * 109.46715 * 183.98473 * 15 14 13 17 17 C 1.52994 * 115.55620 * 65.32620 * 16 15 14 18 18 N 1.46507 * 109.46732 * 65.04303 * 17 16 15 19 19 C 1.36935 * 119.99686 * 185.03335 * 18 17 16 20 20 H 1.07998 * 120.00450 * 4.98022 * 19 18 17 21 21 C 1.38817 * 119.99686 * 184.98445 * 19 18 17 22 22 N 1.31624 * 119.99824 * 184.71061 * 21 19 18 23 23 Si 1.86797 * 119.99982 * 4.70986 * 21 19 18 24 24 H 1.48504 * 109.47206 * 94.27805 * 23 21 19 25 25 H 1.48504 * 109.46951 * 214.27644 * 23 21 19 26 26 H 1.48495 * 109.47310 * 334.27747 * 23 21 19 27 27 C 1.53005 * 117.49861 * 279.65416 * 16 15 14 28 28 C 1.53006 * 117.49837 * 211.00066 * 16 15 14 29 29 C 1.52998 * 109.46811 * 209.99635 * 3 2 1 30 30 H 1.09000 * 109.47190 * 60.00507 * 1 2 3 31 31 H 1.09006 * 109.46686 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47487 * 300.00096 * 1 2 3 33 33 H 1.09001 * 109.46897 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47365 * 299.99916 * 5 3 2 35 35 H 1.09002 * 109.47282 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.47407 * 299.99777 * 6 5 3 37 37 H 1.08998 * 109.47085 * 179.97438 * 7 6 5 38 38 H 1.08995 * 109.47035 * 60.00533 * 7 6 5 39 39 H 1.09001 * 109.47358 * 305.00248 * 10 8 7 40 40 H 1.09004 * 109.46723 * 184.99852 * 10 8 7 41 41 H 0.97003 * 119.99890 * 355.06759 * 13 11 10 42 42 H 1.08994 * 109.47218 * 304.97469 * 14 13 11 43 43 H 1.09004 * 109.46847 * 64.98055 * 14 13 11 44 44 H 1.08998 * 109.47324 * 303.98467 * 15 14 13 45 45 H 1.09002 * 109.47035 * 63.98657 * 15 14 13 46 46 H 1.08993 * 109.47949 * 185.04439 * 17 16 15 47 47 H 1.09002 * 109.47027 * 305.04908 * 17 16 15 48 48 H 0.96999 * 120.00045 * 5.03502 * 18 17 16 49 49 H 0.96994 * 119.99592 * 179.97438 * 22 21 19 50 50 H 1.09002 * 117.49829 * 0.02562 * 27 16 15 51 51 H 1.09001 * 117.49948 * 145.02206 * 27 16 15 52 52 H 1.08994 * 117.50040 * 214.97737 * 28 16 15 53 53 H 1.08997 * 117.49465 * 359.97304 * 28 16 15 54 54 H 1.09009 * 109.46892 * 180.02562 * 29 3 2 55 55 H 1.08997 * 109.47380 * 60.00380 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.1513 0.7975 2.1638 7 6 4.5001 0.7553 1.4426 8 6 4.2927 0.2893 0.0002 9 1 3.8493 -0.7064 0.0001 10 6 5.6413 0.2477 -0.7212 11 6 6.5186 -0.8001 -0.0860 12 8 6.1060 -1.4493 0.8516 13 7 7.7618 -1.0157 -0.5599 14 6 8.6533 -1.9562 0.1234 15 6 10.0327 -1.9233 -0.5377 16 6 10.9342 -2.9758 0.1107 17 6 10.5087 -4.4301 -0.1010 18 7 10.6062 -4.7651 -1.5239 19 6 10.1772 -5.9864 -1.9706 20 1 9.6937 -6.6712 -1.2896 21 6 10.3639 -6.3444 -3.2987 22 7 9.8700 -7.4777 -3.7505 23 14 11.3159 -5.2176 -4.4448 24 1 12.7391 -5.6395 -4.4842 25 1 10.7378 -5.2975 -5.8103 26 1 11.2275 -3.8199 -3.9509 27 6 11.5891 -2.6187 1.4466 28 6 12.4342 -2.6803 0.1719 29 6 3.3588 1.2633 -0.7212 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.6612 2.7671 1.4425 34 1 1.2567 1.8015 1.9563 35 1 3.2994 1.1297 3.1914 36 1 2.7081 -0.1983 2.1639 37 1 5.1655 0.0618 1.9567 38 1 4.9434 1.7510 1.4426 39 1 6.1247 1.2217 -0.6443 40 1 5.4841 0.0020 -1.7715 41 1 8.0662 -0.5481 -1.3535 42 1 8.7460 -1.6726 1.1717 43 1 8.2411 -2.9629 0.0544 44 1 9.9310 -2.1378 -1.6016 45 1 10.4749 -0.9357 -0.4068 46 1 11.1624 -5.0871 0.4726 47 1 9.4793 -4.5598 0.2331 48 1 10.9747 -4.1219 -2.1494 49 1 10.0002 -7.7276 -4.6786 50 1 11.3774 -1.6341 1.8637 51 1 11.7171 -3.4199 2.1745 52 1 13.1178 -3.5220 0.0616 53 1 12.7787 -1.7364 -0.2503 54 1 3.8024 2.2590 -0.7208 55 1 3.2111 0.9314 -1.7488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165441126.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:37 Heat of formation + Delta-G solvation = -95.691092 kcal Electronic energy + Delta-G solvation = -29872.213218 eV Core-core repulsion = 25908.246055 eV Total energy + Delta-G solvation = -3963.967163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.13396 -40.07180 -39.50376 -37.15644 -36.11124 -35.73041 -33.41287 -33.23177 -31.33492 -31.06238 -28.35134 -27.84486 -27.29769 -24.55724 -24.27241 -23.45056 -23.06551 -22.50193 -21.33046 -20.50896 -20.36332 -19.21358 -17.92900 -17.24460 -16.96216 -16.75827 -16.60894 -16.58532 -16.28666 -16.19387 -15.80140 -15.58846 -15.27556 -14.91376 -14.64675 -14.46439 -14.31703 -14.18924 -14.03073 -13.47585 -13.42250 -13.34138 -13.10321 -12.95199 -12.85668 -12.71753 -12.67416 -12.38428 -12.29055 -12.15387 -12.13445 -11.91918 -11.87693 -11.79168 -11.43348 -11.23916 -11.16952 -11.10256 -10.96818 -10.65329 -10.47842 -10.33160 -10.00365 -9.28330 -8.03818 -5.37211 1.34864 1.41949 1.48887 1.73349 2.26831 2.47839 2.84661 2.96785 3.26418 3.68875 3.71587 3.75339 3.82029 3.87378 3.92802 4.00924 4.06287 4.13445 4.21383 4.30754 4.39768 4.42507 4.44117 4.48378 4.55269 4.57540 4.62069 4.65184 4.72524 4.76113 4.83975 4.84022 4.87387 4.88767 4.92264 4.96799 4.99833 5.08084 5.08812 5.14978 5.26540 5.31075 5.31686 5.34521 5.35142 5.39839 5.46445 5.60603 5.67018 5.74068 6.20329 6.40202 6.64478 7.07667 7.36495 7.83122 8.06848 9.18237 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.002253 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.493855 B =12426.693947 C =13715.022342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.082 3.918 4 H 0.078 0.922 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.064 4.064 9 H 0.045 0.955 10 C -0.130 4.130 11 C 0.502 3.498 12 O -0.583 6.583 13 N -0.723 5.723 14 C 0.130 3.870 15 C -0.075 4.075 16 C -0.147 4.147 17 C 0.189 3.811 18 N -0.748 5.748 19 C -0.237 4.237 20 H 0.046 0.954 21 C -0.067 4.067 22 N -0.986 5.986 23 Si 0.965 3.035 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.244 1.244 27 C -0.151 4.151 28 C -0.162 4.162 29 C -0.107 4.107 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.414 0.586 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.370 0.630 49 H 0.258 0.742 50 H 0.117 0.883 51 H 0.092 0.908 52 H 0.083 0.917 53 H 0.115 0.885 54 H 0.103 0.897 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 30.101 8.144 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.025 3.975 4 H 0.096 0.904 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.083 4.083 9 H 0.063 0.937 10 C -0.169 4.169 11 C 0.290 3.710 12 O -0.463 6.463 13 N -0.375 5.375 14 C 0.006 3.994 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.063 3.937 18 N -0.395 5.395 19 C -0.368 4.368 20 H 0.064 0.936 21 C -0.259 4.259 22 N -0.637 5.637 23 Si 0.791 3.209 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.168 1.168 27 C -0.188 4.188 28 C -0.199 4.199 29 C -0.144 4.144 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.127 0.873 41 H 0.251 0.749 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.035 0.965 47 H 0.035 0.965 48 H 0.204 0.796 49 H 0.067 0.933 50 H 0.135 0.865 51 H 0.110 0.890 52 H 0.102 0.898 53 H 0.134 0.866 54 H 0.121 0.879 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.135 29.275 8.860 32.550 hybrid contribution 0.170 -0.538 -1.026 1.170 sum -10.965 28.737 7.834 31.740 Atomic orbital electron populations 1.22884 0.80519 1.03028 1.00622 1.87973 1.20508 1.29123 1.95147 1.22303 0.95100 0.84302 0.95835 0.90372 1.22015 0.99790 0.99681 0.95778 1.21351 0.95623 0.99183 0.98776 1.21628 0.97192 1.01077 0.95310 1.20724 0.93409 0.99306 0.94908 0.93671 1.21822 0.95035 0.98700 1.01389 1.21454 0.82041 0.84254 0.83218 1.90676 1.73839 1.50595 1.31162 1.46005 1.14193 1.45357 1.31955 1.21112 0.89603 0.92094 0.96587 1.21125 0.92488 0.98369 0.99309 1.21456 0.95799 0.94257 1.03320 1.20223 0.97116 0.92143 0.84265 1.42623 1.76766 1.15168 1.04901 1.19007 1.30009 0.93320 0.94441 0.93592 1.25620 1.02447 0.98950 0.98841 1.69922 1.52016 1.25884 1.15840 0.85261 0.78243 0.79754 0.77617 1.20724 1.22137 1.16816 1.23077 1.02167 1.03604 0.89979 1.23073 0.91687 1.03492 1.01629 1.21729 0.93262 1.00631 0.98827 0.92905 0.89958 0.93445 0.89190 0.91833 0.92066 0.94200 0.93193 0.90756 0.85603 0.87310 0.74907 0.91547 0.95077 0.91877 0.88205 0.96531 0.96548 0.79569 0.93302 0.86457 0.88962 0.89811 0.86628 0.87911 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 113.37 1.23 1.59 16 2 O -0.41 -8.34 9.00 -148.98 -1.34 -9.68 16 3 C 0.08 1.19 2.92 30.59 0.09 1.28 16 4 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 5 C -0.14 -1.84 5.63 30.59 0.17 -1.67 16 6 C -0.11 -2.16 5.78 30.60 0.18 -1.98 16 7 C -0.11 -2.32 4.94 30.59 0.15 -2.17 16 8 C -0.06 -1.27 1.69 -10.79 -0.02 -1.29 16 9 H 0.04 1.29 7.50 -2.39 -0.02 1.27 16 10 C -0.13 -2.15 5.18 29.85 0.15 -1.99 16 11 C 0.50 13.02 7.54 87.66 0.66 13.68 16 12 O -0.58 -20.92 13.97 -3.04 -0.04 -20.96 16 13 N -0.72 -16.57 5.55 -463.04 -2.57 -19.14 16 14 C 0.13 3.61 5.59 86.38 0.48 4.10 16 15 C -0.08 -1.84 5.13 30.60 0.16 -1.68 16 16 C -0.15 -4.18 1.53 -52.18 -0.08 -4.26 16 17 C 0.19 7.56 5.92 86.38 0.51 8.07 16 18 N -0.75 -35.78 5.23 -343.45 -1.80 -37.58 16 19 C -0.24 -14.07 10.47 84.04 0.88 -13.19 16 20 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.99 -64.96 13.97 21.65 0.30 -64.65 16 23 Si 0.96 45.76 28.00 68.60 1.92 47.68 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.24 -10.03 6.16 99.48 0.61 -9.42 16 27 C -0.15 -3.34 9.94 30.62 0.30 -3.04 16 28 C -0.16 -3.85 9.94 30.62 0.30 -3.55 16 29 C -0.11 -1.44 4.94 30.59 0.15 -1.29 16 30 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.81 7.87 -2.39 -0.02 0.80 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 0.99 7.68 -2.39 -0.02 0.97 16 37 H 0.05 1.36 5.95 -2.39 -0.01 1.34 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.41 6.63 8.48 -92.71 -0.79 5.85 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.03 1.14 6.82 -2.38 -0.02 1.12 16 44 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 45 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 46 H 0.02 0.69 8.09 -2.39 -0.02 0.67 16 47 H 0.02 0.72 6.89 -2.39 -0.02 0.71 16 48 H 0.37 16.51 5.07 -92.71 -0.47 16.04 16 49 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 50 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 54 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 55 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -81.07 425.70 1.77 -79.29 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.49 Total: 36.05 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.79 Total: -11.00 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -4.06 Total: -121.38 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.38 Total: -30.64 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.92 Total: 47.68 kcal Total: -81.07 1.77 -79.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165441126.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.399 kcal (2) G-P(sol) polarization free energy of solvation -81.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds