Wall clock time and date at job start Tue Mar 31 2020 22:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99949 * 2 1 4 4 H 1.08999 * 109.47560 * 30.00243 * 3 2 1 5 5 C 1.53004 * 109.47136 * 269.99929 * 3 2 1 6 6 C 1.53002 * 109.47157 * 300.00237 * 5 3 2 7 7 C 1.53001 * 109.47035 * 300.00179 * 6 5 3 8 8 C 1.52994 * 109.47301 * 59.99908 * 7 6 5 9 9 H 1.08997 * 109.47226 * 60.00332 * 8 7 6 10 10 C 1.53001 * 109.47301 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47234 * 295.00224 * 10 8 7 12 12 O 1.21285 * 120.00137 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00267 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00181 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47300 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47449 * 174.93325 * 15 14 13 17 17 C 1.53002 * 115.54993 * 65.29053 * 16 15 14 18 18 N 1.46505 * 109.46914 * 65.14856 * 17 16 15 19 19 C 1.36932 * 119.99647 * 175.04445 * 18 17 16 20 20 H 1.07994 * 120.00632 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99476 * 180.02562 * 19 18 17 22 22 N 1.31613 * 120.00271 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99724 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47237 * 60.00015 * 23 21 19 25 25 H 1.48501 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46852 * 299.99841 * 23 21 19 27 27 C 1.52999 * 117.50086 * 279.62380 * 16 15 14 28 28 C 1.52995 * 117.50249 * 210.96284 * 16 15 14 29 29 C 1.52998 * 109.46994 * 150.00222 * 3 2 1 30 30 H 1.09000 * 109.46754 * 300.00249 * 1 2 3 31 31 H 1.09001 * 109.46981 * 59.99963 * 1 2 3 32 32 H 1.08997 * 109.46807 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47071 * 180.02562 * 5 3 2 34 34 H 1.08995 * 109.46972 * 60.00364 * 5 3 2 35 35 H 1.08997 * 109.46941 * 180.02562 * 6 5 3 36 36 H 1.08997 * 109.47309 * 59.99735 * 6 5 3 37 37 H 1.09005 * 109.47020 * 299.99924 * 7 6 5 38 38 H 1.08999 * 109.47228 * 180.02562 * 7 6 5 39 39 H 1.09002 * 109.46859 * 55.00264 * 10 8 7 40 40 H 1.09002 * 109.47617 * 174.99970 * 10 8 7 41 41 H 0.97003 * 120.00075 * 0.02562 * 13 11 10 42 42 H 1.09002 * 109.47442 * 300.00270 * 14 13 11 43 43 H 1.09002 * 109.47418 * 60.00460 * 14 13 11 44 44 H 1.08997 * 109.47104 * 294.93621 * 15 14 13 45 45 H 1.09005 * 109.47297 * 54.93582 * 15 14 13 46 46 H 1.08997 * 109.47142 * 185.15131 * 17 16 15 47 47 H 1.09005 * 109.47218 * 305.15080 * 17 16 15 48 48 H 0.96999 * 119.99890 * 355.05136 * 18 17 16 49 49 H 0.96996 * 119.99845 * 179.97438 * 22 21 19 50 50 H 1.09005 * 117.49668 * 0.02562 * 27 16 15 51 51 H 1.09008 * 117.50064 * 145.01431 * 27 16 15 52 52 H 1.08996 * 117.50290 * 214.97709 * 28 16 15 53 53 H 1.09003 * 117.49773 * 359.97438 * 28 16 15 54 54 H 1.09007 * 109.47373 * 299.99825 * 29 3 2 55 55 H 1.09005 * 109.47196 * 179.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.1515 0.7973 -2.1638 7 6 4.5002 0.7550 -1.4425 8 6 4.2927 0.2891 -0.0001 9 1 3.8494 -0.7066 -0.0001 10 6 5.6415 0.2463 0.7210 11 6 6.5178 -0.8022 0.0856 12 8 6.1041 -1.4516 -0.8515 13 7 7.7612 -1.0183 0.5585 14 6 8.6128 -2.0379 -0.0589 15 6 9.9616 -2.0807 0.6621 16 6 10.8035 -3.2287 0.1015 17 6 11.2232 -3.0853 -1.3629 18 7 12.1246 -1.9388 -1.5024 19 6 12.7130 -1.6735 -2.7100 20 1 12.5124 -2.3092 -3.5598 21 6 13.5675 -0.5875 -2.8421 22 7 13.8117 0.1875 -1.8067 23 14 14.3697 -0.2252 -4.4897 24 1 13.3180 0.0198 -5.5091 25 1 15.2298 0.9792 -4.3673 26 1 15.1985 -1.3861 -4.9026 27 6 10.5078 -4.6387 0.6166 28 6 11.7845 -3.9158 1.0534 29 6 3.3590 1.2632 0.7212 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6615 2.7670 -1.4425 34 1 1.2569 1.8015 -1.9563 35 1 3.2996 1.1295 -3.1913 36 1 2.7082 -0.1985 -2.1638 37 1 4.9436 1.7508 -1.4425 38 1 5.1656 0.0615 -1.9566 39 1 6.1257 1.2198 0.6441 40 1 5.4844 0.0006 1.7713 41 1 8.0919 -0.4992 1.3083 42 1 8.1287 -3.0114 0.0187 43 1 8.7697 -1.7929 -1.1094 44 1 10.4856 -1.1373 0.5088 45 1 9.7988 -2.2368 1.7286 46 1 11.7359 -3.9918 -1.6843 47 1 10.3388 -2.9294 -1.9808 48 1 12.3046 -1.3677 -0.7393 49 1 14.4090 0.9461 -1.8989 50 1 9.7133 -4.7485 1.3547 51 1 10.6127 -5.4642 -0.0875 52 1 12.7287 -4.2661 0.6365 53 1 11.8304 -3.5498 2.0791 54 1 3.2112 0.9313 1.7489 55 1 3.8026 2.2589 0.7208 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165441127.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:42 Heat of formation + Delta-G solvation = -98.802734 kcal Electronic energy + Delta-G solvation = -29775.683015 eV Core-core repulsion = 25811.580922 eV Total energy + Delta-G solvation = -3964.102094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.12812 -40.05472 -39.45249 -37.14495 -36.02034 -35.68941 -33.41519 -32.78906 -31.32033 -31.05471 -28.22000 -27.63951 -27.26881 -24.65079 -24.53181 -23.45749 -23.08888 -22.49909 -21.31440 -20.50517 -19.92118 -19.01552 -17.92125 -17.23464 -16.96367 -16.78172 -16.62108 -16.56447 -16.27038 -16.07395 -15.71954 -15.61689 -15.16230 -15.00319 -14.57268 -14.48008 -14.28274 -14.14924 -13.90399 -13.43441 -13.34229 -13.14636 -13.06099 -12.94370 -12.77735 -12.69154 -12.63261 -12.41538 -12.28966 -12.20145 -12.13287 -11.93600 -11.88108 -11.81711 -11.43843 -11.23247 -11.16447 -11.13049 -10.89026 -10.62690 -10.45722 -10.32513 -10.00391 -8.97670 -7.95294 -5.22646 1.45024 1.47989 1.53953 1.74296 2.27605 2.53845 2.91435 2.97227 3.37223 3.71345 3.75318 3.82594 3.83737 3.89664 3.98647 4.02590 4.08803 4.21326 4.24114 4.30116 4.42158 4.46160 4.48939 4.49786 4.56288 4.58576 4.62173 4.66483 4.72220 4.77275 4.83739 4.84881 4.87816 4.88122 4.93034 4.99565 5.00331 5.08614 5.08837 5.20304 5.27203 5.30349 5.33533 5.34106 5.36257 5.39184 5.46105 5.47492 5.59299 5.65630 6.27121 6.40494 6.65271 7.34185 7.37143 8.10334 8.36750 9.27725 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002169 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.212061 B =12907.460692 C =14403.453541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.085 3.915 4 H 0.080 0.920 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.060 4.060 9 H 0.055 0.945 10 C -0.130 4.130 11 C 0.502 3.498 12 O -0.583 6.583 13 N -0.721 5.721 14 C 0.134 3.866 15 C -0.073 4.073 16 C -0.142 4.142 17 C 0.187 3.813 18 N -0.734 5.734 19 C -0.248 4.248 20 H 0.068 0.932 21 C -0.072 4.072 22 N -0.965 5.965 23 Si 0.971 3.029 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.150 4.150 28 C -0.162 4.162 29 C -0.107 4.107 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.414 0.586 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.016 0.984 47 H 0.010 0.990 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.116 0.884 51 H 0.093 0.907 52 H 0.078 0.922 53 H 0.110 0.890 54 H 0.079 0.921 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.606 2.420 12.406 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.028 3.972 4 H 0.098 0.902 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.079 4.079 9 H 0.073 0.927 10 C -0.170 4.170 11 C 0.290 3.710 12 O -0.463 6.463 13 N -0.374 5.374 14 C 0.010 3.990 15 C -0.111 4.111 16 C -0.142 4.142 17 C 0.060 3.940 18 N -0.377 5.377 19 C -0.380 4.380 20 H 0.086 0.914 21 C -0.265 4.265 22 N -0.615 5.615 23 Si 0.799 3.201 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.187 4.187 28 C -0.199 4.199 29 C -0.144 4.144 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.034 0.966 47 H 0.028 0.972 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.135 0.865 51 H 0.112 0.888 52 H 0.096 0.904 53 H 0.128 0.872 54 H 0.098 0.902 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.745 1.757 11.559 28.275 hybrid contribution 0.902 0.653 -0.941 1.458 sum -24.843 2.410 10.618 27.124 Atomic orbital electron populations 1.22898 0.80475 1.03155 1.00571 1.87958 1.20516 1.28821 1.95116 1.22250 0.95131 0.84456 0.95394 0.90220 1.22027 0.99699 0.99470 0.96244 1.21332 0.95458 0.99479 0.98506 1.21662 0.97254 1.00687 0.96143 1.20700 0.93403 0.99663 0.94170 0.92686 1.21826 0.94954 0.98295 1.01911 1.21460 0.82135 0.84373 0.83010 1.90672 1.74302 1.51088 1.30256 1.46015 1.14659 1.39990 1.36726 1.21051 0.90293 0.91439 0.96204 1.21070 0.92715 0.97386 0.99883 1.21425 1.03479 0.95005 0.94339 1.20244 0.91450 0.89449 0.92839 1.42401 1.53822 1.31442 1.10023 1.19559 1.20049 1.08444 0.89912 0.91373 1.25501 1.01776 0.98368 1.00824 1.69788 1.41618 1.19312 1.30792 0.85261 0.78081 0.77077 0.79640 1.20832 1.21747 1.20456 1.23088 0.99356 0.93192 1.03105 1.22973 0.93962 1.03513 0.99501 1.21724 0.93123 1.00411 0.99146 0.92809 0.93760 0.89618 0.89751 0.91678 0.92700 0.93549 0.91724 0.93621 0.86822 0.86085 0.74896 0.91824 0.94940 0.92448 0.88586 0.96558 0.97239 0.79056 0.93951 0.86543 0.88803 0.90365 0.87202 0.90204 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -7.59 9.00 -148.98 -1.34 -8.93 16 3 C 0.09 1.22 2.92 30.59 0.09 1.31 16 4 H 0.08 0.80 7.79 -2.39 -0.02 0.78 16 5 C -0.14 -2.08 5.63 30.60 0.17 -1.91 16 6 C -0.11 -2.36 5.78 30.60 0.18 -2.19 16 7 C -0.12 -2.81 4.94 30.59 0.15 -2.66 16 8 C -0.06 -1.21 1.69 -10.79 -0.02 -1.23 16 9 H 0.05 1.46 7.49 -2.39 -0.02 1.45 16 10 C -0.13 -2.24 5.18 29.85 0.15 -2.08 16 11 C 0.50 13.45 7.55 87.66 0.66 14.11 16 12 O -0.58 -21.31 13.97 -3.04 -0.04 -21.35 16 13 N -0.72 -17.53 5.56 -463.07 -2.57 -20.10 16 14 C 0.13 4.02 5.41 86.38 0.47 4.49 16 15 C -0.07 -2.05 5.12 30.59 0.16 -1.90 16 16 C -0.14 -4.51 1.56 -52.18 -0.08 -4.59 16 17 C 0.19 7.91 5.93 86.38 0.51 8.42 16 18 N -0.73 -38.25 5.52 -343.44 -1.89 -40.14 16 19 C -0.25 -14.33 9.99 84.04 0.84 -13.49 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 22 N -0.96 -59.27 13.06 21.65 0.28 -58.99 16 23 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 27 C -0.15 -3.73 9.94 30.62 0.30 -3.43 16 28 C -0.16 -4.59 9.94 30.62 0.30 -4.29 16 29 C -0.11 -1.43 4.95 30.59 0.15 -1.28 16 30 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.04 0.48 7.87 -2.39 -0.02 0.47 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.06 0.91 7.87 -2.39 -0.02 0.89 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 37 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 38 H 0.05 1.43 5.95 -2.39 -0.01 1.42 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.41 7.20 8.47 -92.71 -0.79 6.41 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.03 1.24 7.23 -2.39 -0.02 1.22 16 44 H 0.06 1.92 7.49 -2.39 -0.02 1.90 16 45 H 0.10 2.04 8.09 -2.38 -0.02 2.02 16 46 H 0.02 0.71 8.09 -2.39 -0.02 0.69 16 47 H 0.01 0.44 7.11 -2.38 -0.02 0.42 16 48 H 0.38 20.48 7.03 -92.71 -0.65 19.83 16 49 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 50 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 51 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 52 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 53 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 54 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 55 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -75.45 429.05 1.62 -73.84 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -0.58 Total: 39.32 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.74 Total: -12.94 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -4.18 Total: -119.23 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.38 Total: -30.28 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.45 1.62 -73.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165441127.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.965 kcal (2) G-P(sol) polarization free energy of solvation -75.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds