Wall clock time and date at job start Tue Mar 31 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00208 * 2 1 4 4 H 1.09005 * 109.46875 * 30.00007 * 3 2 1 5 5 C 1.53003 * 109.47079 * 270.00402 * 3 2 1 6 6 C 1.53005 * 109.46813 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47191 * 59.99764 * 6 5 3 8 8 C 1.53005 * 109.47085 * 299.99754 * 7 6 5 9 9 H 1.08991 * 109.47178 * 300.00183 * 8 7 6 10 10 C 1.52996 * 109.46776 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47415 * 65.00062 * 10 8 7 12 12 O 1.21284 * 119.99721 * 359.97438 * 11 10 8 13 13 N 1.34774 * 120.00080 * 179.97438 * 11 10 8 14 14 C 1.46502 * 119.99949 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47043 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46866 * 185.10590 * 15 14 13 17 17 C 1.53005 * 115.55073 * 295.45748 * 16 15 14 18 18 N 1.46500 * 109.47061 * 297.24397 * 17 16 15 19 19 C 1.36935 * 119.99704 * 176.65418 * 18 17 16 20 20 H 1.07996 * 120.00242 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99733 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00161 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99851 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47367 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46974 * 119.99819 * 23 21 19 26 26 H 1.48499 * 109.47087 * 239.99542 * 23 21 19 27 27 C 1.52994 * 117.49942 * 149.79242 * 16 15 14 28 28 C 1.52996 * 117.50174 * 81.12938 * 16 15 14 29 29 C 1.53001 * 109.47171 * 150.00015 * 3 2 1 30 30 H 1.08998 * 109.47112 * 59.99638 * 1 2 3 31 31 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46614 * 300.00092 * 1 2 3 33 33 H 1.09001 * 109.47221 * 59.99687 * 5 3 2 34 34 H 1.08998 * 109.46924 * 299.99155 * 5 3 2 35 35 H 1.08998 * 109.46798 * 299.99370 * 6 5 3 36 36 H 1.08995 * 109.46914 * 179.97438 * 6 5 3 37 37 H 1.09001 * 109.46907 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.46919 * 59.99701 * 7 6 5 39 39 H 1.09005 * 109.46978 * 304.99895 * 10 8 7 40 40 H 1.09003 * 109.46911 * 185.00241 * 10 8 7 41 41 H 0.96996 * 119.99939 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.47295 * 300.00131 * 14 13 11 43 43 H 1.09005 * 109.47172 * 60.00328 * 14 13 11 44 44 H 1.09004 * 109.47176 * 305.10061 * 15 14 13 45 45 H 1.08996 * 109.47235 * 65.10501 * 15 14 13 46 46 H 1.09004 * 109.46822 * 57.24332 * 17 16 15 47 47 H 1.08991 * 109.47201 * 177.24175 * 17 16 15 48 48 H 0.96993 * 120.00318 * 356.66484 * 18 17 16 49 49 H 0.97004 * 120.00131 * 180.02562 * 22 21 19 50 50 H 1.09000 * 117.50187 * 359.97438 * 27 16 15 51 51 H 1.09007 * 117.50523 * 145.01732 * 27 16 15 52 52 H 1.08998 * 117.50234 * 214.97418 * 28 16 15 53 53 H 1.09004 * 117.49876 * 359.97438 * 28 16 15 54 54 H 1.08991 * 109.47262 * 60.00199 * 29 3 2 55 55 H 1.08998 * 109.46762 * 300.00039 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 2.8394 3.1694 -1.4425 7 6 4.1880 3.1278 -0.7210 8 6 3.9806 2.6618 0.7215 9 1 3.3150 3.3554 1.2352 10 6 5.3291 2.6208 1.4430 11 6 5.8837 4.0178 1.5512 12 8 5.2618 4.9541 1.0955 13 7 7.0708 4.2268 2.1542 14 6 7.6102 5.5849 2.2588 15 6 8.9587 5.5438 2.9805 16 6 9.4618 6.9715 3.2028 17 6 9.7800 7.7643 1.9335 18 7 10.8703 7.1075 1.2080 19 6 11.2833 7.6011 -0.0006 20 1 10.8057 8.4747 -0.4189 21 6 12.3160 6.9784 -0.6882 22 7 12.8978 5.9134 -0.1787 23 14 12.8800 7.6522 -2.3368 24 1 12.0713 8.8477 -2.6858 25 1 14.3131 8.0321 -2.2521 26 1 12.7046 6.6126 -3.3826 27 6 10.3325 7.2300 4.4340 28 6 8.8913 7.7442 4.3938 29 6 3.3590 1.2632 0.7212 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.2568 1.8015 -1.9563 34 1 2.8830 1.0776 -1.9563 35 1 2.1738 3.8630 -0.9288 36 1 2.9876 3.5012 -2.4701 37 1 4.6308 4.1238 -0.7206 38 1 4.8536 2.4341 -1.2348 39 1 6.0234 1.9968 0.8803 40 1 5.1944 2.2050 2.4416 41 1 7.5683 3.4780 2.5183 42 1 7.7455 6.0000 1.2602 43 1 6.9158 6.2094 2.8209 44 1 8.8407 5.0462 3.9431 45 1 9.6790 4.9952 2.3737 46 1 8.8945 7.8054 1.2992 47 1 10.0811 8.7765 2.2032 48 1 11.2994 6.3230 1.5838 49 1 13.6197 5.4785 -0.6591 50 1 10.5467 6.3831 5.0858 51 1 11.1319 7.9651 4.3399 52 1 8.7431 8.8173 4.2732 53 1 8.1572 7.2355 5.0187 54 1 4.0242 0.5694 0.2075 55 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165441128.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:46 Heat of formation + Delta-G solvation = -100.762290 kcal Electronic energy + Delta-G solvation = -29591.908517 eV Core-core repulsion = 25627.721450 eV Total energy + Delta-G solvation = -3964.187066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.12893 -40.00937 -39.44898 -37.50638 -36.02497 -35.70432 -33.49486 -32.79154 -31.31909 -30.98071 -28.21850 -27.63175 -27.29281 -24.65218 -24.52601 -23.37127 -23.09280 -22.50462 -21.34660 -20.78753 -19.92047 -19.01805 -17.89380 -17.50459 -16.96649 -16.81546 -16.63412 -16.50615 -16.20753 -16.02524 -15.67825 -15.61351 -15.23774 -14.99796 -14.68138 -14.60582 -14.27087 -14.21340 -13.86609 -13.82297 -13.30653 -13.13395 -13.06148 -12.93409 -12.83120 -12.72258 -12.53392 -12.38763 -12.28471 -12.14178 -11.97079 -11.95036 -11.93232 -11.83555 -11.53302 -11.37995 -11.29722 -11.11385 -10.91912 -10.68677 -10.51481 -10.37667 -10.00533 -8.97746 -7.95961 -5.23079 1.44929 1.45335 1.55359 1.72665 2.23993 2.53165 2.81861 2.92151 3.36980 3.64870 3.74078 3.79528 3.82818 3.89599 4.00686 4.08668 4.09826 4.10005 4.21257 4.26378 4.30767 4.45483 4.48821 4.49945 4.51902 4.53389 4.55452 4.65075 4.65909 4.71154 4.75021 4.83414 4.84136 4.88015 4.95554 4.99328 5.04308 5.06203 5.08877 5.19456 5.22881 5.24607 5.28287 5.32201 5.34179 5.37176 5.42829 5.48022 5.52850 5.57467 6.26834 6.29876 6.64015 7.33942 7.35138 8.10211 8.36178 9.27383 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.002154 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.738947 B =12997.390819 C =14653.206346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.089 3.911 4 H 0.064 0.936 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.125 4.125 8 C -0.060 4.060 9 H 0.068 0.932 10 C -0.130 4.130 11 C 0.504 3.496 12 O -0.581 6.581 13 N -0.721 5.721 14 C 0.135 3.865 15 C -0.073 4.073 16 C -0.142 4.142 17 C 0.187 3.813 18 N -0.734 5.734 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.073 4.073 22 N -0.964 5.964 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.293 1.293 27 C -0.164 4.164 28 C -0.149 4.149 29 C -0.104 4.104 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.414 0.586 42 H 0.032 0.968 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.377 0.623 49 H 0.251 0.749 50 H 0.109 0.891 51 H 0.079 0.921 52 H 0.094 0.906 53 H 0.117 0.883 54 H 0.073 0.927 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.244 -11.968 8.368 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.031 3.969 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.149 4.149 7 C -0.162 4.162 8 C -0.079 4.079 9 H 0.086 0.914 10 C -0.169 4.169 11 C 0.292 3.708 12 O -0.461 6.461 13 N -0.374 5.374 14 C 0.011 3.989 15 C -0.111 4.111 16 C -0.143 4.143 17 C 0.061 3.939 18 N -0.377 5.377 19 C -0.376 4.376 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.615 5.615 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.220 1.220 27 C -0.201 4.201 28 C -0.187 4.187 29 C -0.142 4.142 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.251 0.749 42 H 0.050 0.950 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.128 0.872 51 H 0.098 0.902 52 H 0.113 0.887 53 H 0.135 0.865 54 H 0.092 0.908 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.585 -11.329 7.906 27.333 hybrid contribution 0.962 0.313 -1.073 1.475 sum -22.623 -11.016 6.833 26.074 Atomic orbital electron populations 1.22945 0.79993 1.03656 1.00573 1.87870 1.21008 1.28445 1.95197 1.22156 0.95141 0.84068 0.95514 0.91805 1.21990 1.01285 0.96743 0.97228 1.21414 0.96449 0.96495 1.00564 1.21724 0.97537 1.01532 0.95421 1.20757 0.95210 0.96335 0.95626 0.91397 1.21767 0.98025 0.92271 1.04861 1.21346 0.80550 0.92498 0.76367 1.90662 1.60322 1.46376 1.48751 1.46013 1.21539 1.10115 1.59691 1.21051 0.94675 0.83723 0.99454 1.21067 0.94605 0.94366 1.01067 1.21428 1.06296 0.96468 0.90091 1.20243 0.89610 0.93516 0.90579 1.42415 1.39904 1.34294 1.21070 1.19619 1.12729 1.08621 0.96610 0.91345 1.25485 0.99810 0.98756 1.02470 1.69803 1.27964 1.23238 1.40519 0.85141 0.77606 0.77558 0.79881 1.19517 1.21800 1.21978 1.23000 0.94135 1.03613 0.99395 1.23084 0.96396 1.00248 0.98929 1.21579 0.95003 0.96140 1.01440 0.93634 0.88560 0.93289 0.91465 0.91626 0.92165 0.91808 0.92627 0.92201 0.87227 0.85753 0.74944 0.94953 0.91602 0.88624 0.92576 0.96720 0.96995 0.79072 0.93998 0.87231 0.90237 0.88738 0.86499 0.90842 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.09 10.35 -148.98 -1.54 -8.63 16 3 C 0.09 1.42 2.61 30.60 0.08 1.50 16 4 H 0.06 0.96 7.79 -2.38 -0.02 0.94 16 5 C -0.13 -2.23 5.54 30.60 0.17 -2.06 16 6 C -0.11 -2.12 5.92 30.60 0.18 -1.93 16 7 C -0.12 -2.72 4.95 30.60 0.15 -2.57 16 8 C -0.06 -1.08 1.84 -10.78 -0.02 -1.10 16 9 H 0.07 1.39 7.95 -2.39 -0.02 1.37 16 10 C -0.13 -2.10 5.18 29.85 0.15 -1.95 16 11 C 0.50 12.70 7.55 87.66 0.66 13.36 16 12 O -0.58 -19.73 13.96 -3.04 -0.04 -19.77 16 13 N -0.72 -16.89 5.56 -463.06 -2.57 -19.47 16 14 C 0.14 3.93 5.39 86.38 0.47 4.40 16 15 C -0.07 -2.03 5.10 30.59 0.16 -1.87 16 16 C -0.14 -4.40 1.57 -52.18 -0.08 -4.48 16 17 C 0.19 7.76 5.89 86.38 0.51 8.26 16 18 N -0.73 -37.77 5.44 -343.45 -1.87 -39.64 16 19 C -0.24 -13.98 9.99 84.03 0.84 -13.15 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.96 -59.06 13.06 21.65 0.28 -58.78 16 23 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 C -0.16 -4.48 9.94 30.62 0.30 -4.18 16 28 C -0.15 -3.56 9.95 30.62 0.30 -3.25 16 29 C -0.10 -1.56 4.86 30.61 0.15 -1.41 16 30 H 0.04 0.47 7.87 -2.39 -0.02 0.45 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 33 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.60 5.95 -2.39 -0.01 1.58 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.41 7.01 8.47 -92.71 -0.79 6.22 16 42 H 0.03 1.22 7.27 -2.39 -0.02 1.20 16 43 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.10 1.98 8.10 -2.38 -0.02 1.96 16 45 H 0.06 1.88 7.53 -2.39 -0.02 1.86 16 46 H 0.01 0.65 7.17 -2.38 -0.02 0.63 16 47 H 0.01 0.51 8.11 -2.39 -0.02 0.49 16 48 H 0.38 20.29 7.11 -92.71 -0.66 19.63 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 50 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 51 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 52 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 54 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 55 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.64 431.24 1.41 -71.23 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.59 Total: 38.57 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.72 Total: -12.70 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -4.16 Total: -117.88 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.58 Total: -28.41 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -72.64 1.41 -71.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165441128.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.536 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds