Wall clock time and date at job start Tue Mar 31 2020 22:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00131 * 2 1 4 4 C 1.52996 * 109.47489 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47760 * 185.32579 * 4 3 2 6 6 C 1.50700 * 110.53558 * 296.37266 * 5 4 3 7 7 O 1.21276 * 120.00057 * 244.60392 * 6 5 4 8 8 N 1.34779 * 119.99909 * 64.60984 * 6 5 4 9 9 C 1.46503 * 119.99797 * 183.40745 * 8 6 5 10 10 C 1.52999 * 109.46849 * 175.08156 * 9 8 6 11 11 C 1.53000 * 109.47191 * 183.65727 * 10 9 8 12 12 C 1.52994 * 115.55227 * 65.51072 * 11 10 9 13 13 N 1.46497 * 109.47186 * 64.80837 * 12 11 10 14 14 C 1.36942 * 120.00365 * 185.12879 * 13 12 11 15 15 H 1.08004 * 119.99628 * 4.94519 * 14 13 12 16 16 C 1.38811 * 119.99913 * 184.95223 * 14 13 12 17 17 N 1.31622 * 119.99645 * 184.29819 * 16 14 13 18 18 Si 1.86796 * 120.00302 * 4.29857 * 16 14 13 19 19 H 1.48499 * 109.47304 * 93.30910 * 18 16 14 20 20 H 1.48501 * 109.46978 * 213.30904 * 18 16 14 21 21 H 1.48500 * 109.47143 * 333.30893 * 18 16 14 22 22 C 1.52999 * 117.49806 * 279.84332 * 11 10 9 23 23 C 1.52998 * 117.49918 * 211.18380 * 11 10 9 24 24 C 1.54263 * 110.49045 * 173.75896 * 5 4 3 25 25 C 1.53866 * 106.60184 * 217.71081 * 24 5 4 26 26 C 1.54268 * 106.59775 * 0.02562 * 25 24 5 27 27 C 1.54890 * 104.19733 * 23.60998 * 26 25 24 28 28 H 1.08995 * 109.47554 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47037 * 300.00473 * 1 2 3 30 30 H 1.08997 * 109.47111 * 59.99800 * 1 2 3 31 31 H 1.08998 * 109.47542 * 59.99478 * 3 2 1 32 32 H 1.09003 * 109.47117 * 300.00096 * 3 2 1 33 33 H 1.08998 * 109.47357 * 65.32052 * 4 3 2 34 34 H 1.09004 * 109.46908 * 305.32577 * 4 3 2 35 35 H 0.97000 * 119.99948 * 3.40277 * 8 6 5 36 36 H 1.08999 * 109.46981 * 295.07849 * 9 8 6 37 37 H 1.09002 * 109.47266 * 55.08696 * 9 8 6 38 38 H 1.09006 * 109.47391 * 303.65592 * 10 9 8 39 39 H 1.09005 * 109.47240 * 63.65573 * 10 9 8 40 40 H 1.08998 * 109.47740 * 184.80950 * 12 11 10 41 41 H 1.09006 * 109.47255 * 304.81369 * 12 11 10 42 42 H 0.97001 * 120.00164 * 5.13334 * 13 12 11 43 43 H 0.96999 * 120.00369 * 180.02562 * 17 16 14 44 44 H 1.09002 * 117.50007 * 0.02562 * 22 11 10 45 45 H 1.08997 * 117.50621 * 145.01602 * 22 11 10 46 46 H 1.09002 * 117.49879 * 214.97347 * 23 11 10 47 47 H 1.09003 * 117.49938 * 359.97438 * 23 11 10 48 48 H 1.09005 * 110.02872 * 98.42177 * 24 5 4 49 49 H 1.08998 * 110.03143 * 337.00245 * 24 5 4 50 50 H 1.09000 * 110.03463 * 119.28705 * 25 24 5 51 51 H 1.09000 * 110.03785 * 240.71838 * 25 24 5 52 52 H 1.09003 * 110.48989 * 142.28704 * 26 25 24 53 53 H 1.09004 * 110.48620 * 264.93086 * 26 25 24 54 54 H 1.09001 * 110.75366 * 80.36838 * 27 26 25 55 55 H 1.08997 * 110.75573 * 203.74837 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5761 0.1345 6 6 3.8092 3.4278 -1.0590 7 8 4.6835 3.8070 -1.8091 8 7 2.5262 3.7682 -1.2928 9 6 2.1783 4.5329 -2.4930 10 6 0.6579 4.6797 -2.5812 11 6 0.2895 5.3986 -3.8806 12 6 0.6125 4.6396 -5.1691 13 7 -0.2000 3.4224 -5.2357 14 6 -0.0076 2.5254 -6.2523 15 1 0.7954 2.6743 -6.9591 16 6 -0.8446 1.4248 -6.3745 17 7 -0.6088 0.5182 -7.2991 18 14 -2.3055 1.2304 -5.2268 19 1 -3.5135 1.8188 -5.8590 20 1 -2.5383 -0.2122 -4.9619 21 1 -2.0261 1.9299 -3.9470 22 6 0.4213 6.9227 -3.9065 23 6 -0.9650 6.2744 -3.8721 24 6 5.6880 2.4705 0.2944 25 6 6.1013 3.5597 1.2995 26 6 4.8072 4.2890 1.7159 27 6 3.6850 3.2567 1.4436 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8642 0.7281 -0.9329 34 1 3.8504 0.5637 0.8394 35 1 1.8332 3.5069 -0.6663 36 1 2.6362 5.5206 -2.4399 37 1 2.5446 4.0095 -3.3762 38 1 0.1962 3.6923 -2.5688 39 1 0.2989 5.2594 -1.7308 40 1 0.3905 5.2720 -6.0287 41 1 1.6691 4.3720 -5.1781 42 1 -0.8744 3.2519 -4.5596 43 1 -1.1939 -0.2508 -7.3848 44 1 0.7709 7.4132 -2.9980 45 1 0.7377 7.3847 -4.8416 46 1 -1.5600 6.3102 -4.7847 47 1 -1.5281 6.3381 -2.9410 48 1 6.1763 2.6427 -0.6648 49 1 5.9562 1.4864 0.6788 50 1 6.5701 3.1044 2.1718 51 1 6.7902 4.2607 0.8282 52 1 4.8388 4.5479 2.7742 53 1 4.6600 5.1818 1.1080 54 1 3.6218 2.5318 2.2552 55 1 2.7279 3.7567 1.2953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168399608.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:21 Heat of formation + Delta-G solvation = -82.570021 kcal Electronic energy + Delta-G solvation = -31455.065511 eV Core-core repulsion = 27491.667321 eV Total energy + Delta-G solvation = -3963.398190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83159 -39.76130 -38.90382 -38.14195 -36.26517 -35.90068 -33.65843 -33.24808 -31.16840 -29.68795 -28.87740 -28.11485 -26.80058 -25.12720 -24.30861 -23.95416 -23.17389 -22.56164 -21.35783 -20.84481 -20.17395 -19.12805 -17.83350 -17.65206 -17.14886 -17.04167 -16.66075 -16.58093 -16.37683 -16.04130 -15.92702 -15.74492 -15.26696 -15.13735 -14.86947 -14.63862 -14.39359 -14.22625 -14.09832 -13.95268 -13.48214 -13.30296 -13.11108 -12.88349 -12.73038 -12.53525 -12.39611 -12.30756 -12.20623 -12.16620 -12.10963 -11.98883 -11.95034 -11.84039 -11.81059 -11.61822 -11.31911 -11.12862 -11.00537 -10.79295 -10.67442 -10.59590 -10.06838 -9.30057 -8.05195 -5.38661 1.31294 1.39305 1.45971 1.55785 2.10084 2.45857 2.72128 2.81868 3.25248 3.39495 3.54364 3.65646 3.69112 3.76133 3.88995 3.98730 3.99845 4.04645 4.11539 4.11766 4.30759 4.35844 4.37628 4.38823 4.46430 4.47188 4.52599 4.56971 4.59041 4.64245 4.77720 4.82886 4.84405 4.85683 4.88764 4.92148 4.96967 5.04363 5.06790 5.08121 5.09404 5.15426 5.21768 5.25687 5.28450 5.30118 5.33274 5.39655 5.50444 5.72663 6.16269 6.18789 6.46216 7.06172 7.18283 7.81509 8.04705 9.16889 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.003744 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.416292 B = 7476.247905 C = 8904.468468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.412 6.412 3 C 0.041 3.959 4 C -0.100 4.100 5 C -0.075 4.075 6 C 0.520 3.480 7 O -0.580 6.580 8 N -0.719 5.719 9 C 0.127 3.873 10 C -0.077 4.077 11 C -0.149 4.149 12 C 0.190 3.810 13 N -0.748 5.748 14 C -0.238 4.238 15 H 0.046 0.954 16 C -0.064 4.064 17 N -0.985 5.985 18 Si 0.961 3.039 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.245 1.245 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.108 4.108 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.410 0.590 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.369 0.631 43 H 0.258 0.742 44 H 0.119 0.881 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.053 0.947 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.051 0.949 52 H 0.092 0.908 53 H 0.048 0.952 54 H 0.107 0.893 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 9.604 27.457 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.331 6.331 3 C -0.035 4.035 4 C -0.137 4.137 5 C -0.078 4.078 6 C 0.307 3.693 7 O -0.459 6.459 8 N -0.374 5.374 9 C 0.003 3.997 10 C -0.115 4.115 11 C -0.150 4.150 12 C 0.064 3.936 13 N -0.394 5.394 14 C -0.369 4.369 15 H 0.064 0.936 16 C -0.256 4.256 17 N -0.635 5.635 18 Si 0.787 3.213 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.170 1.170 22 C -0.187 4.187 23 C -0.198 4.198 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.162 4.162 27 C -0.145 4.145 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.137 0.863 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.071 0.929 49 H 0.107 0.893 50 H 0.105 0.895 51 H 0.070 0.930 52 H 0.111 0.889 53 H 0.067 0.933 54 H 0.126 0.874 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.015 9.647 26.710 28.838 hybrid contribution -1.053 -0.635 -0.674 1.402 sum 3.962 9.012 26.036 27.835 Atomic orbital electron populations 1.22932 0.79745 1.03822 1.00827 1.87828 1.21151 1.28574 1.95583 1.23046 0.93917 0.85195 1.01349 1.21465 0.93420 0.94970 1.03874 1.21610 0.98434 0.93928 0.93808 1.20970 0.82045 0.79623 0.86625 1.90662 1.48841 1.56156 1.50268 1.46276 1.08810 1.56637 1.25647 1.21206 0.96042 0.95728 0.86725 1.21146 0.93298 1.00930 0.96084 1.21435 1.05521 0.93121 0.94877 1.20209 0.93251 0.86257 0.93905 1.42607 1.44497 1.22267 1.30064 1.19011 1.10795 1.02096 1.05016 0.93556 1.25581 1.02582 0.96749 1.00644 1.69914 1.41556 1.13588 1.38492 0.85322 0.79503 0.76716 0.79729 1.20542 1.22080 1.16952 1.23085 0.99418 0.91955 1.04197 1.23078 0.90625 1.02261 1.03818 1.22172 0.91753 1.00821 1.00255 1.22101 0.97923 0.97029 0.98710 1.22377 0.94128 0.97398 1.02270 1.22745 0.98831 0.98525 0.94434 0.88893 0.91334 0.94948 0.89653 0.93851 0.93203 0.87476 0.75062 0.91146 0.94565 0.92202 0.87969 0.96469 0.96663 0.79676 0.93300 0.86314 0.88904 0.89791 0.86565 0.92856 0.89250 0.89540 0.92990 0.88921 0.93328 0.87437 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.06 10.70 -148.98 -1.59 -11.65 16 3 C 0.04 0.82 4.53 71.98 0.33 1.14 16 4 C -0.10 -1.98 4.56 30.59 0.14 -1.85 16 5 C -0.07 -1.44 0.55 -51.84 -0.03 -1.47 16 6 C 0.52 14.22 6.25 87.66 0.55 14.77 16 7 O -0.58 -21.33 15.42 -3.02 -0.05 -21.38 16 8 N -0.72 -17.06 4.19 -463.06 -1.94 -19.00 16 9 C 0.13 3.49 5.58 86.38 0.48 3.97 16 10 C -0.08 -1.86 5.13 30.59 0.16 -1.70 16 11 C -0.15 -4.13 1.53 -52.18 -0.08 -4.21 16 12 C 0.19 7.53 5.92 86.38 0.51 8.04 16 13 N -0.75 -35.61 5.22 -343.46 -1.79 -37.40 16 14 C -0.24 -14.13 10.47 84.03 0.88 -13.25 16 15 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 16 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 17 N -0.99 -64.81 13.97 21.65 0.30 -64.50 16 18 Si 0.96 45.55 27.97 68.60 1.92 47.47 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.25 -10.07 6.20 99.48 0.62 -9.46 16 22 C -0.15 -3.17 9.94 30.62 0.30 -2.87 16 23 C -0.16 -3.71 9.94 30.62 0.30 -3.40 16 24 C -0.11 -2.20 5.79 31.31 0.18 -2.02 16 25 C -0.12 -1.86 6.80 31.32 0.21 -1.65 16 26 C -0.12 -1.64 6.61 31.67 0.21 -1.43 16 27 C -0.11 -1.30 4.59 31.90 0.15 -1.16 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.08 6.86 -2.39 -0.02 1.06 16 32 H 0.04 1.00 5.51 -2.39 -0.01 0.99 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.69 8.06 -2.38 -0.02 1.67 16 35 H 0.41 7.26 5.22 -92.71 -0.48 6.78 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.32 6.85 -2.39 -0.02 1.31 16 38 H 0.06 1.66 7.71 -2.38 -0.02 1.64 16 39 H 0.10 1.69 8.09 -2.38 -0.02 1.67 16 40 H 0.02 0.71 8.09 -2.39 -0.02 0.69 16 41 H 0.02 0.67 6.91 -2.38 -0.02 0.65 16 42 H 0.37 16.41 5.07 -92.71 -0.47 15.94 16 43 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.05 1.41 6.80 -2.38 -0.02 1.40 16 49 H 0.09 1.41 7.78 -2.39 -0.02 1.39 16 50 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 54 H 0.11 0.85 8.06 -2.39 -0.02 0.83 16 55 H 0.08 0.80 6.91 -2.39 -0.02 0.78 16 Total: -1.00 -79.87 422.72 2.68 -77.19 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.18 Total: 38.08 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 6.01 Total: -8.79 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -3.43 Total: -120.91 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.64 Total: -33.03 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.92 Total: 47.47 kcal Total: -79.87 2.68 -77.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168399608.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.382 kcal (2) G-P(sol) polarization free energy of solvation -79.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds