Wall clock time and date at job start Tue Mar 31 2020 22:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99974 * 2 1 4 4 C 1.53000 * 109.46718 * 209.99994 * 3 2 1 5 5 C 1.52997 * 109.46906 * 299.99492 * 4 3 2 6 6 C 1.53002 * 109.47574 * 300.00185 * 5 4 3 7 7 C 1.52997 * 109.47574 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47299 * 175.00128 * 7 6 5 9 9 O 1.21279 * 120.00174 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00133 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00305 * 185.15369 * 10 8 7 12 12 C 1.53003 * 109.47099 * 184.86547 * 11 10 8 13 13 C 1.53002 * 109.46674 * 184.63326 * 12 11 10 14 14 C 1.52999 * 115.54814 * 294.50324 * 13 12 11 15 15 N 1.46491 * 109.47679 * 279.67613 * 14 13 12 16 16 C 1.36942 * 120.00595 * 175.05106 * 15 14 13 17 17 H 1.07991 * 119.99355 * 4.46250 * 16 15 14 18 18 C 1.38806 * 120.00300 * 184.73753 * 16 15 14 19 19 N 1.31613 * 120.00081 * 173.69222 * 18 16 15 20 20 Si 1.86805 * 120.00041 * 353.68759 * 18 16 15 21 21 H 1.48496 * 109.47162 * 93.89443 * 20 18 16 22 22 H 1.48501 * 109.47100 * 213.89508 * 20 18 16 23 23 H 1.48495 * 109.47075 * 333.89427 * 20 18 16 24 24 C 1.52996 * 117.52229 * 80.21155 * 13 12 11 25 25 C 1.52996 * 117.49700 * 148.84199 * 13 12 11 26 26 C 1.53003 * 109.46674 * 60.00162 * 6 5 4 27 27 C 1.53001 * 109.47151 * 89.99539 * 3 2 1 28 28 H 1.09004 * 109.47337 * 300.00623 * 1 2 3 29 29 H 1.09002 * 109.47149 * 60.00006 * 1 2 3 30 30 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46540 * 329.99630 * 3 2 1 32 32 H 1.09003 * 109.46781 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47598 * 59.99910 * 4 3 2 34 34 H 1.09007 * 109.47053 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47056 * 60.00590 * 5 4 3 36 36 H 1.09001 * 109.46935 * 300.00705 * 6 5 4 37 37 H 1.08999 * 109.46952 * 55.00124 * 7 6 5 38 38 H 1.09001 * 109.46851 * 295.00721 * 7 6 5 39 39 H 0.97007 * 119.99892 * 5.16128 * 10 8 7 40 40 H 1.08997 * 109.46509 * 64.86396 * 11 10 8 41 41 H 1.09000 * 109.47045 * 304.86533 * 11 10 8 42 42 H 1.08996 * 109.47306 * 64.63028 * 12 11 10 43 43 H 1.09002 * 109.47153 * 304.63028 * 12 11 10 44 44 H 1.09002 * 109.46805 * 159.67706 * 14 13 12 45 45 H 1.08998 * 109.46901 * 39.67893 * 14 13 12 46 46 H 0.97006 * 119.99538 * 355.05312 * 15 14 13 47 47 H 0.97002 * 120.00486 * 180.02562 * 19 18 16 48 48 H 1.08997 * 117.49890 * 214.96827 * 24 13 12 49 49 H 1.09005 * 117.49832 * 359.97438 * 24 13 12 50 50 H 1.09008 * 117.50078 * 359.96944 * 25 13 12 51 51 H 1.09000 * 117.50115 * 144.99663 * 25 13 12 52 52 H 1.08994 * 109.47389 * 60.00044 * 26 6 5 53 53 H 1.09003 * 109.47070 * 180.02562 * 26 6 5 54 54 H 1.08994 * 109.46966 * 179.97438 * 27 3 2 55 55 H 1.08994 * 109.47269 * 300.00188 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 4.2927 0.2893 0.0001 6 6 4.5001 0.7552 1.4426 7 6 5.4334 -0.2190 2.1641 8 6 5.7357 0.3041 3.5446 9 8 5.2521 1.3527 3.9151 10 7 6.5429 -0.3939 4.3679 11 6 6.7471 0.0551 5.7475 12 6 7.7918 -0.8348 6.4240 13 6 7.9210 -0.4403 7.8966 14 6 8.4769 0.9610 8.1579 15 7 9.9367 0.9377 8.0373 16 6 10.6502 2.1029 8.1297 17 1 10.1448 3.0283 8.3631 18 6 12.0219 2.0955 7.9178 19 7 12.6887 3.2297 7.8835 20 14 12.9218 0.4756 7.6815 21 1 13.0299 0.1764 6.2310 22 1 14.2820 0.5746 8.2692 23 1 12.1689 -0.6119 8.3565 24 6 6.8650 -0.9737 8.8667 25 6 8.2853 -1.5420 8.8937 26 6 3.1514 0.7975 2.1638 27 6 2.2176 1.7715 1.4425 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.3450 1.9993 -0.5139 32 1 3.8021 2.2591 -0.7217 33 1 3.2112 0.9313 -1.7489 34 1 5.2537 0.2595 -0.5135 35 1 3.8493 -0.7065 0.0001 36 1 4.9434 1.7511 1.4425 37 1 6.3617 -0.3172 1.6014 38 1 4.9512 -1.1935 2.2423 39 1 6.9887 -1.1934 4.0470 40 1 5.8060 -0.0097 6.2936 41 1 7.0958 1.0878 5.7456 42 1 8.7539 -0.7073 5.9278 43 1 7.4818 -1.8774 6.3530 44 1 8.2005 1.2799 9.1629 45 1 8.0632 1.6577 7.4289 46 1 10.3979 0.0968 7.8920 47 1 13.6473 3.2246 7.7351 48 1 6.5662 -0.3263 9.6911 49 1 6.0776 -1.6056 8.4559 50 1 8.4323 -2.5481 8.5007 51 1 8.9208 -1.2686 9.7360 52 1 2.7080 -0.1982 2.1638 53 1 3.2991 1.1299 3.1913 54 1 2.6613 2.7670 1.4425 55 1 1.2568 1.8016 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168556566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:24 Heat of formation + Delta-G solvation = -96.296055 kcal Electronic energy + Delta-G solvation = -29681.702939 eV Core-core repulsion = 25717.709543 eV Total energy + Delta-G solvation = -3963.993396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.13603 -40.07826 -39.52298 -37.20651 -36.14384 -35.69171 -33.21779 -33.04753 -31.65920 -31.21107 -28.35649 -27.87281 -27.09885 -24.53092 -24.31963 -23.60716 -22.99920 -22.46154 -21.32202 -20.52573 -20.37951 -19.20294 -17.87349 -17.25084 -17.01492 -16.91548 -16.72267 -16.55699 -16.26212 -16.18676 -15.75494 -15.33795 -15.01770 -14.93805 -14.92347 -14.65072 -14.31499 -14.07879 -13.88058 -13.64629 -13.55725 -13.25514 -13.11497 -12.93042 -12.89875 -12.85314 -12.53096 -12.30101 -12.28285 -12.19898 -12.11115 -11.97304 -11.95180 -11.79001 -11.48474 -11.31447 -11.13763 -10.97189 -10.91591 -10.75829 -10.59082 -10.26902 -10.00862 -9.29357 -8.04479 -5.37447 1.35878 1.40364 1.48687 1.72545 2.25685 2.47489 2.83147 2.92922 3.25419 3.70872 3.73989 3.77794 3.80016 3.82725 3.90008 3.98235 4.04627 4.13416 4.22006 4.23579 4.41414 4.43546 4.46056 4.50575 4.51790 4.60811 4.62880 4.64277 4.67617 4.73200 4.83059 4.84122 4.87439 4.89472 4.93427 4.97246 5.07344 5.08502 5.14553 5.17419 5.20169 5.26685 5.30842 5.32354 5.34285 5.36498 5.47640 5.58865 5.64575 5.73762 6.19663 6.34720 6.64020 7.06921 7.35885 7.82853 8.05789 9.17286 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002000 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.125930 B =13995.482078 C =14808.590293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.089 3.911 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.070 4.070 7 C -0.129 4.129 8 C 0.503 3.497 9 O -0.582 6.582 10 N -0.722 5.722 11 C 0.129 3.871 12 C -0.076 4.076 13 C -0.146 4.146 14 C 0.188 3.812 15 N -0.749 5.749 16 C -0.238 4.238 17 H 0.048 0.952 18 C -0.066 4.066 19 N -0.984 5.984 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.247 1.247 24 C -0.149 4.149 25 C -0.164 4.164 26 C -0.107 4.107 27 C -0.139 4.139 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.415 0.585 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.016 0.984 45 H 0.020 0.980 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.116 0.884 51 H 0.079 0.921 52 H 0.061 0.939 53 H 0.051 0.949 54 H 0.065 0.935 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.390 -15.882 -17.741 34.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.141 4.141 6 C -0.089 4.089 7 C -0.168 4.168 8 C 0.291 3.709 9 O -0.462 6.462 10 N -0.375 5.375 11 C 0.005 3.995 12 C -0.114 4.114 13 C -0.147 4.147 14 C 0.062 3.938 15 N -0.394 5.394 16 C -0.369 4.369 17 H 0.066 0.934 18 C -0.257 4.257 19 N -0.634 5.634 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.172 1.172 24 C -0.186 4.186 25 C -0.202 4.202 26 C -0.145 4.145 27 C -0.177 4.177 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.252 0.748 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.109 0.891 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.098 0.902 52 H 0.080 0.920 53 H 0.069 0.931 54 H 0.084 0.916 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.628 -15.086 -17.441 33.739 hybrid contribution 1.013 0.146 0.298 1.066 sum -23.615 -14.941 -17.143 32.784 Atomic orbital electron populations 1.22907 0.80530 1.03436 1.00280 1.87888 1.20362 1.28162 1.95074 1.22162 0.95309 0.84516 0.94845 1.21651 0.93692 1.00676 0.99372 1.21446 0.99642 0.99625 0.93365 1.20877 0.94737 0.98191 0.95044 1.21781 1.02723 1.01453 0.90877 1.21423 0.77528 0.83677 0.88248 1.90671 1.53155 1.24617 1.77772 1.45991 1.48624 1.30549 1.12306 1.21131 0.98848 0.97764 0.81774 1.21139 0.98418 0.99949 0.91848 1.21472 1.05954 0.94335 0.92896 1.20252 0.82502 0.93974 0.97106 1.42592 1.02757 1.05167 1.88926 1.19012 0.90930 0.87872 1.39112 0.93380 1.25580 0.97404 1.00594 1.02155 1.69919 1.08005 1.27086 1.58424 0.85324 0.77675 0.80149 0.78292 1.20241 1.22164 1.17155 1.23090 0.92233 1.02859 1.00442 1.23024 0.98640 0.97865 1.00632 1.21472 0.94686 0.99446 0.98886 1.21983 0.99686 0.99379 0.96623 0.94201 0.93229 0.88817 0.91412 0.90445 0.90440 0.90763 0.91062 0.92664 0.86755 0.86616 0.74782 0.91671 0.94614 0.91950 0.88040 0.96656 0.96190 0.79831 0.93302 0.89094 0.86265 0.86560 0.90211 0.92045 0.93075 0.91647 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -6.38 9.00 -148.98 -1.34 -7.72 16 3 C 0.09 1.32 2.92 30.59 0.09 1.41 16 4 C -0.12 -1.56 5.66 30.59 0.17 -1.39 16 5 C -0.10 -1.43 5.06 30.59 0.15 -1.28 16 6 C -0.07 -1.27 1.84 -10.79 -0.02 -1.29 16 7 C -0.13 -2.03 5.18 29.84 0.15 -1.88 16 8 C 0.50 12.25 7.54 87.65 0.66 12.91 16 9 O -0.58 -19.81 13.95 -3.03 -0.04 -19.85 16 10 N -0.72 -15.23 5.55 -463.07 -2.57 -17.80 16 11 C 0.13 3.39 5.47 86.38 0.47 3.86 16 12 C -0.08 -1.79 5.22 30.60 0.16 -1.63 16 13 C -0.15 -4.11 1.53 -52.18 -0.08 -4.19 16 14 C 0.19 7.51 6.12 86.38 0.53 8.04 16 15 N -0.75 -35.95 5.37 -343.48 -1.84 -37.80 16 16 C -0.24 -14.16 10.46 84.03 0.88 -13.28 16 17 H 0.05 3.17 8.06 -2.92 -0.02 3.15 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 19 N -0.98 -64.68 13.97 21.65 0.30 -64.38 16 20 Si 0.96 45.85 27.75 68.60 1.90 47.75 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 24 C -0.15 -3.29 9.90 30.59 0.30 -2.99 16 25 C -0.16 -4.03 9.82 30.59 0.30 -3.73 16 26 C -0.11 -2.22 4.80 30.60 0.15 -2.08 16 27 C -0.14 -2.51 5.63 30.60 0.17 -2.34 16 28 H 0.04 0.43 7.87 -2.38 -0.02 0.41 16 29 H 0.05 0.43 8.09 -2.39 -0.02 0.41 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 1.02 7.68 -2.39 -0.02 1.00 16 36 H 0.05 1.26 7.96 -2.39 -0.02 1.24 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.42 5.73 8.48 -92.70 -0.79 4.95 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.24 6.91 -2.39 -0.02 1.23 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 1.66 8.09 -2.39 -0.02 1.64 16 44 H 0.02 0.64 7.95 -2.39 -0.02 0.62 16 45 H 0.02 0.87 6.72 -2.39 -0.02 0.85 16 46 H 0.37 16.56 5.49 -92.70 -0.51 16.05 16 47 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 48 H 0.09 2.10 8.08 -2.39 -0.02 2.08 16 49 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 50 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 51 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.06 1.24 7.68 -2.39 -0.02 1.22 16 53 H 0.05 1.37 5.95 -2.39 -0.01 1.36 16 54 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 55 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 Total: -1.00 -78.40 426.45 1.70 -76.70 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.50 Total: 34.97 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 5.79 Total: -11.87 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.11 Total: -119.98 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.38 Total: -27.57 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -78.40 1.70 -76.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168556566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.599 kcal (2) G-P(sol) polarization free energy of solvation -78.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds