Wall clock time and date at job start Tue Mar 31 2020 23:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99806 * 2 1 4 4 H 1.09001 * 109.47119 * 30.00276 * 3 2 1 5 5 C 1.50700 * 109.47061 * 270.00103 * 3 2 1 6 6 O 1.21278 * 120.00152 * 355.00645 * 5 3 2 7 7 N 1.34778 * 119.99817 * 175.00050 * 5 3 2 8 8 C 1.46502 * 119.99680 * 180.02562 * 7 5 3 9 9 C 1.53007 * 109.46991 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46955 * 175.02101 * 9 8 7 11 11 C 1.52995 * 115.54912 * 278.03138 * 10 9 8 12 12 N 1.46495 * 109.47265 * 303.89975 * 11 10 9 13 13 C 1.36936 * 119.99985 * 175.59354 * 12 11 10 14 14 H 1.07998 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.38818 * 119.99848 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00000 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47432 * 90.00265 * 17 15 13 19 19 H 1.48500 * 109.47049 * 210.00021 * 17 15 13 20 20 H 1.48496 * 109.47140 * 330.00001 * 17 15 13 21 21 C 1.52998 * 117.49455 * 132.32515 * 10 9 8 22 22 C 1.53000 * 60.00113 * 252.50933 * 21 10 9 23 23 C 1.53002 * 109.47316 * 150.00335 * 3 2 1 24 24 C 1.53006 * 109.46827 * 59.99769 * 23 3 2 25 25 C 1.53002 * 109.46827 * 180.02562 * 24 23 3 26 26 C 1.53010 * 109.46765 * 60.00172 * 25 24 23 27 27 C 1.52999 * 109.47109 * 299.99753 * 26 25 24 28 28 C 1.52995 * 109.46984 * 60.00239 * 27 26 25 29 29 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46916 * 299.99820 * 1 2 3 31 31 H 1.08993 * 109.47861 * 59.99879 * 1 2 3 32 32 H 0.96993 * 120.00496 * 359.97438 * 7 5 3 33 33 H 1.09001 * 109.47089 * 299.99640 * 8 7 5 34 34 H 1.09000 * 109.47218 * 59.99728 * 8 7 5 35 35 H 1.09001 * 109.46921 * 295.02137 * 9 8 7 36 36 H 1.08991 * 109.47058 * 55.02064 * 9 8 7 37 37 H 1.09001 * 109.47305 * 63.90601 * 11 10 9 38 38 H 1.09006 * 109.46931 * 183.90434 * 11 10 9 39 39 H 0.97003 * 119.99969 * 355.59285 * 12 11 10 40 40 H 0.97005 * 119.99853 * 179.97438 * 16 15 13 41 41 H 1.09002 * 117.50401 * 359.97438 * 21 10 9 42 42 H 1.09007 * 117.50013 * 145.01965 * 21 10 9 43 43 H 1.08998 * 117.50057 * 252.51072 * 22 21 10 44 44 H 1.08995 * 117.49790 * 107.48917 * 22 21 10 45 45 H 1.08992 * 109.47367 * 179.97438 * 23 3 2 46 46 H 1.08999 * 109.47190 * 299.99719 * 24 23 3 47 47 H 1.08997 * 109.47235 * 60.00308 * 24 23 3 48 48 H 1.08996 * 109.47563 * 300.00325 * 25 24 23 49 49 H 1.08995 * 109.46749 * 179.97438 * 25 24 23 50 50 H 1.09002 * 109.46976 * 179.97438 * 26 25 24 51 51 H 1.09003 * 109.47160 * 60.00098 * 26 25 24 52 52 H 1.08996 * 109.47235 * 299.99857 * 27 26 25 53 53 H 1.09003 * 109.46632 * 180.02562 * 27 26 25 54 54 H 1.09001 * 109.46953 * 179.97438 * 28 27 26 55 55 H 1.09003 * 109.47085 * 59.99778 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9789 1.0107 -2.3413 7 7 2.6587 3.0125 -1.6686 8 6 2.8567 3.4588 -3.0498 9 6 3.3628 4.9027 -3.0516 10 6 3.6876 5.3275 -4.4852 11 6 5.0558 4.8877 -5.0097 12 7 6.1038 5.3766 -4.1105 13 6 7.4102 5.0283 -4.3281 14 1 7.6679 4.3935 -5.1629 15 6 8.4033 5.4921 -3.4762 16 7 8.0892 6.2662 -2.4591 17 14 10.1854 5.0175 -3.7735 18 1 10.8238 6.0222 -4.6613 19 1 10.9084 4.9721 -2.4772 20 1 10.2407 3.6810 -4.4183 21 6 3.1488 6.6781 -4.9609 22 6 2.5311 5.3804 -5.4855 23 6 3.3589 1.2634 0.7212 24 6 4.2927 0.2893 -0.0002 25 6 5.6412 0.2467 0.7214 26 6 5.4333 -0.2196 2.1638 27 6 4.4995 0.7544 2.8850 28 6 3.1510 0.7970 2.1635 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 2.8466 3.6155 -0.9324 33 1 3.5901 2.8166 -3.5375 34 1 1.9107 3.4042 -3.5885 35 1 2.5930 5.5580 -2.6441 36 1 4.2616 4.9735 -2.4393 37 1 5.0948 3.7993 -5.0554 38 1 5.2119 5.2990 -6.0071 39 1 5.8724 5.9471 -3.3608 40 1 8.7832 6.5899 -1.8636 41 1 2.5627 7.2639 -4.2528 42 1 3.7693 7.2538 -5.6478 43 1 2.7451 5.1023 -6.5174 44 1 1.5389 5.1126 -5.1223 45 1 3.8024 2.2590 0.7208 46 1 3.8494 -0.7065 -0.0001 47 1 4.4404 0.6212 -1.0278 48 1 6.0847 1.2424 0.7218 49 1 6.3062 -0.4475 0.2078 50 1 6.3940 -0.2504 2.6777 51 1 4.9897 -1.2153 2.1634 52 1 4.9430 1.7501 2.8855 53 1 4.3517 0.4224 3.9127 54 1 2.4856 1.4906 2.6776 55 1 2.7075 -0.1987 2.1631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168702666.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:31 Heat of formation + Delta-G solvation = -96.529335 kcal Electronic energy + Delta-G solvation = -30929.927822 eV Core-core repulsion = 26965.924311 eV Total energy + Delta-G solvation = -3964.003512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46374 -39.78905 -39.13004 -38.00191 -36.07608 -35.73510 -33.19752 -32.79667 -31.65315 -31.03297 -28.28510 -27.80205 -26.89628 -24.64170 -24.49219 -23.60338 -23.09253 -22.70419 -21.41833 -20.59603 -19.95350 -19.05906 -18.30404 -17.80709 -17.22182 -16.87009 -16.58571 -16.39061 -15.98237 -15.69067 -15.54966 -15.46253 -15.14767 -14.94737 -14.93341 -14.70424 -14.42770 -14.19525 -14.05751 -13.92987 -13.19587 -13.16742 -13.04695 -13.01783 -12.80737 -12.79601 -12.56128 -12.32645 -12.28553 -12.12424 -12.00704 -11.98250 -11.94025 -11.85650 -11.58905 -11.35468 -11.12699 -11.10436 -10.93117 -10.92727 -10.58982 -10.23263 -10.11287 -8.97277 -7.95044 -5.22185 1.45917 1.46532 1.53819 1.55025 2.06757 2.53857 2.80309 2.89395 3.38146 3.56134 3.60312 3.76178 3.83103 3.83598 3.89157 3.98095 4.07671 4.08673 4.25214 4.29082 4.36316 4.39143 4.41277 4.47410 4.51486 4.55362 4.58315 4.63267 4.63730 4.65715 4.73058 4.82822 4.84557 4.93044 4.97017 4.99444 5.06744 5.14871 5.18226 5.24315 5.26047 5.28256 5.30442 5.32851 5.37148 5.37589 5.40509 5.43018 5.48728 5.61066 6.03032 6.27592 6.53788 7.20735 7.35119 8.10261 8.37214 9.28006 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008393 B = 0.003556 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.374162 B = 7871.412755 C =10472.241666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.084 3.916 4 H 0.119 0.881 5 C 0.487 3.513 6 O -0.576 6.576 7 N -0.716 5.716 8 C 0.136 3.864 9 C -0.077 4.077 10 C -0.141 4.141 11 C 0.189 3.811 12 N -0.734 5.734 13 C -0.248 4.248 14 H 0.067 0.933 15 C -0.066 4.066 16 N -0.962 5.962 17 Si 0.966 3.034 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.276 1.276 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.075 4.075 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.102 4.102 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.413 0.587 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.011 0.989 38 H 0.013 0.987 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.026 0.974 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.062 0.938 53 H 0.079 0.921 54 H 0.083 0.917 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 -7.799 11.306 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.022 3.978 4 H 0.137 0.863 5 C 0.274 3.726 6 O -0.455 6.455 7 N -0.369 5.369 8 C 0.012 3.988 9 C -0.115 4.115 10 C -0.142 4.142 11 C 0.062 3.938 12 N -0.377 5.377 13 C -0.380 4.380 14 H 0.085 0.915 15 C -0.259 4.259 16 N -0.612 5.612 17 Si 0.795 3.205 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.201 1.201 21 C -0.198 4.198 22 C -0.190 4.190 23 C -0.094 4.094 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.140 4.140 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.249 0.751 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.211 0.789 40 H 0.061 0.939 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.081 0.919 53 H 0.097 0.903 54 H 0.102 0.898 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.727 -8.618 10.553 22.358 hybrid contribution 1.341 0.439 -0.258 1.435 sum -16.385 -8.179 10.295 21.009 Atomic orbital electron populations 1.23015 0.79621 1.04063 1.00507 1.87975 1.21267 1.25481 1.94242 1.22228 0.98004 0.87229 0.90302 0.86309 1.21969 0.76171 0.81354 0.93151 1.90676 1.52306 1.54739 1.47786 1.46022 1.66963 1.14503 1.09457 1.21122 1.00050 0.94961 0.82632 1.21108 1.01353 0.94406 0.94610 1.21411 0.94243 1.03007 0.95562 1.20196 0.86182 0.95277 0.92095 1.42411 1.02461 1.59901 1.32908 1.19568 0.85323 1.24197 1.08915 0.91521 1.25416 1.01574 1.00936 0.97949 1.69787 1.32958 1.39962 1.18540 0.85260 0.80731 0.77892 0.76615 1.21352 1.21807 1.20084 1.23058 1.02955 0.90239 1.03552 1.23043 0.96785 1.00689 0.98515 1.21320 0.91319 1.00573 0.96182 1.21406 0.95785 0.99956 0.97197 1.21540 0.96337 1.01156 0.96884 1.21523 1.00061 0.99461 0.94317 1.21541 0.95035 0.99636 0.99335 1.21481 0.97798 1.02480 0.92198 0.88400 0.91240 0.95164 0.75091 0.94689 0.91142 0.88988 0.92133 0.97061 0.96936 0.78906 0.93938 0.87177 0.89898 0.88675 0.86857 0.88950 0.91992 0.95467 0.92731 0.92811 0.91579 0.91839 0.91940 0.90279 0.89805 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.81 113.37 1.23 1.62 16 2 O -0.37 -8.61 8.54 -129.99 -1.11 -9.72 16 3 C 0.08 1.73 2.26 29.85 0.07 1.80 16 4 H 0.12 1.60 7.79 -2.39 -0.02 1.58 16 5 C 0.49 13.66 5.87 87.66 0.51 14.18 16 6 O -0.58 -21.55 16.51 15.97 0.26 -21.29 16 7 N -0.72 -17.99 5.52 -463.04 -2.55 -20.54 16 8 C 0.14 3.94 5.49 86.38 0.47 4.42 16 9 C -0.08 -2.19 5.20 30.60 0.16 -2.03 16 10 C -0.14 -4.42 1.65 -52.18 -0.09 -4.50 16 11 C 0.19 7.86 6.15 86.38 0.53 8.39 16 12 N -0.73 -37.43 5.23 -343.46 -1.80 -39.23 16 13 C -0.25 -14.13 9.99 84.04 0.84 -13.29 16 14 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 15 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 16 N -0.96 -57.88 13.06 21.65 0.28 -57.59 16 17 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 C -0.16 -4.33 9.87 30.59 0.30 -4.02 16 22 C -0.15 -3.74 9.58 30.59 0.29 -3.44 16 23 C -0.08 -1.50 2.04 -10.79 -0.02 -1.52 16 24 C -0.11 -2.76 4.81 30.60 0.15 -2.62 16 25 C -0.12 -2.92 5.92 30.60 0.18 -2.74 16 26 C -0.12 -2.15 5.92 30.60 0.18 -1.97 16 27 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 28 C -0.10 -1.55 5.06 30.59 0.15 -1.40 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 0.74 8.09 -2.38 -0.02 0.73 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.41 8.06 8.26 -92.71 -0.77 7.29 16 33 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 34 H 0.07 1.93 7.72 -2.39 -0.02 1.91 16 35 H 0.09 2.06 7.93 -2.39 -0.02 2.04 16 36 H 0.06 2.10 6.94 -2.39 -0.02 2.09 16 37 H 0.01 0.50 7.96 -2.39 -0.02 0.48 16 38 H 0.01 0.54 8.10 -2.38 -0.02 0.52 16 39 H 0.38 20.03 6.80 -92.71 -0.63 19.40 16 40 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 41 H 0.11 2.49 8.07 -2.39 -0.02 2.47 16 42 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.11 2.28 7.90 -2.39 -0.02 2.26 16 45 H 0.09 1.75 7.92 -2.39 -0.02 1.73 16 46 H 0.06 1.71 7.68 -2.39 -0.02 1.69 16 47 H 0.03 0.88 7.22 -2.39 -0.02 0.86 16 48 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 55 H 0.07 1.13 7.68 -2.39 -0.02 1.12 16 Total: -1.00 -72.89 431.47 2.18 -70.70 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.54 Total: 41.15 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.61 Total: -12.09 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.07 Total: -117.37 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.85 Total: -31.01 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.89 2.18 -70.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168702666.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.826 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds