Wall clock time and date at job start Tue Mar 31 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.46884 * 2 1 4 4 C 1.34230 * 116.99588 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00350 * 0.02562 * 4 3 2 6 6 C 1.50709 * 119.99516 * 179.72308 * 4 3 2 7 7 C 1.52997 * 109.46824 * 60.28041 * 6 4 3 8 8 C 1.52999 * 109.47263 * 300.27755 * 6 4 3 9 9 C 1.53001 * 109.47122 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.46949 * 59.99749 * 9 8 6 11 11 N 1.46902 * 109.46892 * 179.97438 * 10 9 8 12 12 C 1.46959 * 110.99922 * 58.80293 * 11 10 9 13 13 C 1.53046 * 109.36484 * 176.80949 * 12 11 10 14 14 N 1.46948 * 109.36441 * 58.40109 * 13 12 11 15 15 C 1.46902 * 111.00221 * 176.81146 * 14 13 12 16 16 C 1.50699 * 109.47232 * 58.97731 * 15 14 13 17 17 H 1.08005 * 119.99951 * 5.01526 * 16 15 14 18 18 C 1.37874 * 120.00213 * 185.01047 * 16 15 14 19 19 N 1.31513 * 120.00297 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47154 * 90.00321 * 20 18 16 22 22 H 1.48506 * 109.47116 * 209.99902 * 20 18 16 23 23 H 1.48500 * 109.47483 * 329.99960 * 20 18 16 24 24 C 1.46952 * 110.88379 * 300.67626 * 14 13 12 25 25 C 1.46948 * 111.00221 * 295.00244 * 11 10 9 26 26 C 1.52999 * 109.47413 * 300.00073 * 10 9 8 27 27 C 1.52998 * 109.46825 * 180.27495 * 6 4 3 28 28 H 1.09000 * 109.47434 * 59.99744 * 1 2 3 29 29 H 1.08999 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47388 * 299.99874 * 1 2 3 31 31 H 1.08996 * 109.47189 * 240.00469 * 2 1 3 32 32 H 1.08996 * 109.47191 * 119.99830 * 2 1 3 33 33 H 1.08999 * 109.47780 * 59.99982 * 7 6 4 34 34 H 1.09005 * 109.47042 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47294 * 299.99436 * 7 6 4 36 36 H 1.08994 * 109.47161 * 299.99989 * 8 6 4 37 37 H 1.08995 * 109.47059 * 59.99948 * 8 6 4 38 38 H 1.09002 * 109.46901 * 300.00353 * 9 8 6 39 39 H 1.08995 * 109.47179 * 180.02562 * 9 8 6 40 40 H 1.09002 * 109.46826 * 60.00557 * 10 9 8 41 41 H 1.09000 * 109.48825 * 296.77980 * 12 11 10 42 42 H 1.09006 * 109.48754 * 56.84130 * 12 11 10 43 43 H 1.09005 * 109.48709 * 298.43139 * 13 12 11 44 44 H 1.09004 * 109.48977 * 178.37227 * 13 12 11 45 45 H 1.08996 * 109.47527 * 178.98299 * 15 14 13 46 46 H 1.09003 * 109.47438 * 298.97940 * 15 14 13 47 47 H 0.96998 * 120.00413 * 179.97438 * 19 18 16 48 48 H 1.08999 * 109.49350 * 299.35964 * 24 14 13 49 49 H 1.09000 * 109.49597 * 179.28392 * 24 14 13 50 50 H 1.09004 * 109.49277 * 303.15299 * 25 11 10 51 51 H 1.09005 * 109.49192 * 63.22181 * 25 11 10 52 52 H 1.08994 * 109.47161 * 300.00111 * 26 10 9 53 53 H 1.09001 * 109.47193 * 179.97438 * 26 10 9 54 54 H 1.08995 * 109.47717 * 300.00424 * 27 6 4 55 55 H 1.09002 * 109.46826 * 60.00653 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0057 7 6 3.4534 3.6882 1.2428 8 6 3.4448 3.6806 -1.2556 9 6 4.0301 5.0942 -1.2623 10 6 5.5579 5.0136 -1.2675 11 7 6.1198 6.3709 -1.2745 12 6 5.6689 7.1336 -0.1021 13 6 6.3373 8.5104 -0.1046 14 7 5.9985 9.2142 -1.3493 15 6 6.5605 10.5715 -1.3563 16 6 8.0586 10.4957 -1.2124 17 1 8.5526 9.5353 -1.2060 18 6 8.7988 11.6524 -1.0890 19 7 8.1973 12.8219 -1.0964 20 14 10.6559 11.5584 -0.9114 21 1 11.2843 11.5949 -2.2564 22 1 11.1356 12.7127 -0.1096 23 1 11.0244 10.2931 -0.2270 24 6 6.4495 8.4517 -2.5217 25 6 5.7811 7.0747 -2.5192 26 6 6.0338 4.2705 -0.0176 27 6 5.4485 2.8574 -0.0107 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7924 3.1589 2.1333 34 1 3.8703 4.6954 1.2386 35 1 2.3649 3.7453 1.2464 36 1 3.7777 3.1458 -2.1451 37 1 2.3564 3.7376 -1.2521 38 1 3.6976 5.6293 -0.3728 39 1 3.6907 5.6238 -2.1525 40 1 5.8904 4.4786 -2.1571 41 1 4.5864 7.2548 -0.1415 42 1 5.9423 6.5982 0.8072 43 1 7.4186 8.3898 -0.0377 44 1 5.9822 9.0886 0.7484 45 1 6.3101 11.0636 -2.2961 46 1 6.1441 11.1415 -0.5257 47 1 8.7180 13.6357 -1.0092 48 1 7.5320 8.3303 -2.4823 49 1 6.1760 8.9869 -3.4310 50 1 6.1363 6.4966 -3.3723 51 1 4.6998 7.1953 -2.5861 52 1 5.7012 4.8056 0.8718 53 1 7.1222 4.2127 -0.0216 54 1 5.7876 2.3280 0.8797 55 1 5.7814 2.3226 -0.9002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171955565.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:35 Heat of formation + Delta-G solvation = -110.451770 kcal Electronic energy + Delta-G solvation = -31147.810319 eV Core-core repulsion = 27183.203086 eV Total energy + Delta-G solvation = -3964.607234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12976 -40.80274 -39.10565 -37.68130 -36.42555 -34.50360 -32.82669 -32.05185 -31.78080 -31.53541 -29.26062 -27.62668 -26.60087 -25.00474 -24.56262 -23.84105 -23.48665 -23.02941 -21.68806 -20.45047 -19.45548 -18.50116 -18.33185 -17.83289 -17.55551 -17.23004 -16.54371 -16.05483 -15.81962 -15.68226 -15.55714 -15.37788 -15.04191 -14.91916 -14.81257 -14.32863 -14.19618 -13.80288 -13.77442 -13.60350 -13.45246 -13.24206 -13.08881 -12.90314 -12.89777 -12.82547 -12.60917 -12.55181 -12.45458 -12.32497 -12.26107 -12.11169 -12.02508 -11.89919 -11.77147 -11.58099 -11.52951 -11.35915 -11.16968 -11.06714 -10.93917 -10.59777 -9.13494 -8.93375 -8.14189 -6.33489 1.12277 1.36816 1.37297 1.48228 1.64450 2.37886 2.98318 3.10034 3.42778 3.48308 3.60793 3.63985 3.96881 4.00362 4.04613 4.07240 4.10495 4.20256 4.30956 4.32819 4.35449 4.42262 4.47416 4.51835 4.56001 4.58043 4.68428 4.75277 4.77431 4.83765 4.86369 4.91915 4.93147 4.95599 4.99716 5.09465 5.13203 5.13865 5.14287 5.17195 5.21108 5.27465 5.28395 5.31409 5.34888 5.44963 5.47524 5.52919 5.75253 6.06025 6.20337 6.20574 6.38289 6.57231 6.69203 6.87787 7.37662 8.87753 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.002148 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.362876 B =13034.370312 C =13345.222373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.473 3.527 5 O -0.538 6.538 6 C -0.046 4.046 7 C -0.143 4.143 8 C -0.093 4.093 9 C -0.145 4.145 10 C 0.087 3.913 11 N -0.543 5.543 12 C 0.067 3.933 13 C 0.065 3.935 14 N -0.540 5.540 15 C 0.199 3.801 16 C -0.552 4.552 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.957 3.043 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.064 3.936 25 C 0.070 3.930 26 C -0.106 4.106 27 C -0.090 4.090 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.002 0.998 46 H 0.007 0.993 47 H 0.265 0.735 48 H 0.019 0.981 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.047 0.953 52 H 0.076 0.924 53 H 0.069 0.931 54 H 0.070 0.930 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 -25.592 2.494 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.318 3.682 5 O -0.428 6.428 6 C -0.047 4.047 7 C -0.200 4.200 8 C -0.132 4.132 9 C -0.184 4.184 10 C -0.021 4.021 11 N -0.266 5.266 12 C -0.061 4.061 13 C -0.064 4.064 14 N -0.264 5.264 15 C 0.072 3.928 16 C -0.591 4.591 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.065 4.065 25 C -0.058 4.058 26 C -0.143 4.143 27 C -0.128 4.128 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.020 0.980 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.080 0.920 50 H 0.105 0.895 51 H 0.065 0.935 52 H 0.094 0.906 53 H 0.088 0.912 54 H 0.088 0.912 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.756 -25.709 2.502 29.748 hybrid contribution 1.294 0.384 -0.029 1.351 sum -13.462 -25.324 2.472 28.786 Atomic orbital electron populations 1.21817 0.90481 1.04294 1.03743 1.23275 0.97075 0.79451 1.02387 1.86525 1.23979 1.33396 1.83379 1.24116 0.80621 0.92727 0.70777 1.90641 1.61170 1.44184 1.46806 1.20617 0.96311 0.87775 0.99968 1.21974 1.02637 1.01066 0.94353 1.21449 1.01556 0.95156 0.95001 1.22200 0.96399 0.96602 1.03225 1.21775 0.92336 0.88544 0.99404 1.62308 1.59390 1.02601 1.02344 1.22167 0.97706 0.92154 0.94051 1.21950 0.97871 0.94158 0.92391 1.62625 1.57974 1.03204 1.02599 1.19394 0.92028 0.86122 0.95220 1.21951 0.94338 0.92522 1.50247 0.92765 1.25803 1.03217 0.95084 0.94746 1.70059 1.37427 0.98076 1.51033 0.85577 0.80191 0.77759 0.78280 1.20005 1.20572 1.19439 1.21966 0.97226 0.93783 0.93520 1.22082 0.98405 0.92817 0.92491 1.21582 1.00944 0.94030 0.97773 1.21368 0.91155 0.97173 1.03096 0.91279 0.88361 0.91247 0.91516 0.91474 0.91990 0.89746 0.90654 0.91476 0.89769 0.90553 0.91191 0.89992 0.93395 0.89049 0.96163 0.92214 0.97974 0.97495 0.92649 0.96289 0.91993 0.89541 0.93459 0.90557 0.91182 0.91158 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.70 6.19 71.98 0.45 1.14 16 3 O -0.36 -6.21 10.03 -51.42 -0.52 -6.72 16 4 C 0.47 9.44 6.55 71.24 0.47 9.90 16 5 O -0.54 -13.76 15.73 21.98 0.35 -13.41 16 6 C -0.05 -0.75 0.71 -52.93 -0.04 -0.78 16 7 C -0.14 -2.00 7.71 71.98 0.56 -1.45 16 8 C -0.09 -1.41 4.66 30.59 0.14 -1.27 16 9 C -0.15 -2.49 4.23 30.59 0.13 -2.36 16 10 C 0.09 1.76 2.23 44.91 0.10 1.86 16 11 N -0.54 -14.66 4.70 -870.46 -4.09 -18.75 16 12 C 0.07 1.89 4.81 86.31 0.42 2.31 16 13 C 0.07 2.53 5.24 86.31 0.45 2.98 16 14 N -0.54 -23.30 4.92 -900.30 -4.43 -27.73 16 15 C 0.20 10.62 5.14 85.56 0.44 11.06 16 16 C -0.55 -31.02 7.66 25.60 0.20 -30.82 16 17 H 0.05 3.06 5.82 -2.91 -0.02 3.04 16 18 C 0.01 0.61 5.46 84.65 0.46 1.07 16 19 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 20 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 C 0.06 2.47 5.32 86.31 0.46 2.93 16 25 C 0.07 2.01 5.25 86.31 0.45 2.46 16 26 C -0.11 -1.95 4.73 30.58 0.14 -1.80 16 27 C -0.09 -1.59 4.02 30.58 0.12 -1.47 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.15 4.81 -2.38 -0.01 1.13 16 35 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 38 H 0.08 1.32 4.74 -2.39 -0.01 1.31 16 39 H 0.07 1.26 6.59 -2.39 -0.02 1.25 16 40 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16 41 H 0.05 1.28 6.47 -2.39 -0.02 1.26 16 42 H 0.09 2.22 6.18 -2.38 -0.01 2.20 16 43 H 0.02 0.89 6.62 -2.38 -0.02 0.88 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16 48 H 0.02 0.83 6.78 -2.39 -0.02 0.81 16 49 H 0.06 2.40 8.12 -2.39 -0.02 2.38 16 50 H 0.09 2.17 8.12 -2.39 -0.02 2.15 16 51 H 0.05 1.29 6.60 -2.38 -0.02 1.27 16 52 H 0.08 1.34 4.65 -2.39 -0.01 1.33 16 53 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 54 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 55 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -66.68 403.58 0.17 -66.51 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.86 Total: 13.34 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.69 Total: -4.64 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -8.23 Total: -101.74 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.17 Total: -20.13 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.68 0.17 -66.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171955565.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.937 kcal (2) G-P(sol) polarization free energy of solvation -66.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds