Wall clock time and date at job start Tue Mar 31 2020 22:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47212 * 2 1 4 4 C 1.34227 * 117.00368 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99590 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00643 * 180.02562 * 4 3 2 7 7 N 1.46906 * 109.51649 * 316.06626 * 6 4 3 8 8 C 1.46901 * 111.00177 * 295.48204 * 7 6 4 9 9 C 1.53001 * 109.46589 * 120.97810 * 8 7 6 10 10 C 1.53000 * 109.46905 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47166 * 300.00311 * 10 9 8 12 12 C 1.50701 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99713 * 275.27845 * 12 11 10 14 14 C 1.37871 * 120.00170 * 95.28671 * 12 11 10 15 15 N 1.31516 * 120.00543 * 182.52949 * 14 12 11 16 16 Si 1.86802 * 119.99805 * 2.52254 * 14 12 11 17 17 H 1.48503 * 109.46879 * 85.25680 * 16 14 12 18 18 H 1.48502 * 109.47343 * 205.25588 * 16 14 12 19 19 H 1.48499 * 109.47248 * 325.25476 * 16 14 12 20 20 C 1.53004 * 109.46944 * 60.00017 * 11 10 9 21 21 C 1.52992 * 109.47405 * 240.97796 * 8 7 6 22 22 C 1.53124 * 109.57675 * 76.22124 * 6 4 3 23 23 C 1.53033 * 109.27859 * 177.59523 * 22 6 4 24 24 N 1.46848 * 109.52373 * 300.82290 * 23 22 6 25 25 C 1.46901 * 111.00241 * 185.84054 * 24 23 22 26 26 C 1.46846 * 111.19898 * 61.74093 * 24 23 22 27 27 C 1.53035 * 109.52588 * 298.25887 * 26 24 23 28 28 H 1.09000 * 109.46811 * 60.00114 * 1 2 3 29 29 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46676 * 300.00202 * 1 2 3 31 31 H 1.09004 * 109.47005 * 239.99689 * 2 1 3 32 32 H 1.09002 * 109.47242 * 120.00183 * 2 1 3 33 33 H 1.00904 * 110.99295 * 171.53440 * 7 6 4 34 34 H 1.09004 * 109.46873 * 0.98333 * 8 7 6 35 35 H 1.08999 * 109.47567 * 300.00257 * 9 8 7 36 36 H 1.09004 * 109.47086 * 60.00654 * 9 8 7 37 37 H 1.08996 * 109.47151 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.46843 * 60.00347 * 10 9 8 39 39 H 1.08998 * 109.46852 * 299.99605 * 11 10 9 40 40 H 0.96991 * 120.00538 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46589 * 179.97438 * 20 11 10 42 42 H 1.08997 * 109.47311 * 60.00477 * 20 11 10 43 43 H 1.08994 * 109.47713 * 300.00642 * 21 8 7 44 44 H 1.09009 * 109.46869 * 60.00436 * 21 8 7 45 45 H 1.08995 * 109.49910 * 297.53862 * 22 6 4 46 46 H 1.09003 * 109.49681 * 57.65276 * 22 6 4 47 47 H 1.09000 * 109.46361 * 180.80809 * 23 22 6 48 48 H 1.08998 * 109.46387 * 60.83694 * 23 22 6 49 49 H 1.08998 * 109.46973 * 295.78918 * 25 24 23 50 50 H 1.09000 * 109.47088 * 55.78969 * 25 24 23 51 51 H 1.09000 * 109.47135 * 175.78731 * 25 24 23 52 52 H 1.09005 * 109.46274 * 178.24402 * 26 24 23 53 53 H 1.09005 * 109.45587 * 58.27280 * 26 24 23 54 54 H 1.08994 * 109.50419 * 299.23873 * 27 26 24 55 55 H 1.08996 * 109.53713 * 179.13680 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 7 3.1866 3.7726 -0.9599 8 6 3.3729 3.2846 -2.3328 9 6 2.0123 2.9334 -2.9382 10 6 2.2063 2.4245 -4.3680 11 6 2.8739 3.5132 -5.2107 12 6 3.0655 3.0117 -6.6188 13 1 3.9361 2.4234 -6.8686 14 6 2.1296 3.3040 -7.5881 15 7 2.2711 2.8248 -8.8046 16 14 0.6604 4.3804 -7.1733 17 1 1.0378 5.8095 -7.3162 18 1 -0.4584 4.0690 -8.0988 19 1 0.2337 4.1184 -5.7752 20 6 4.2345 3.8643 -4.6052 21 6 4.0401 4.3737 -3.1751 22 6 3.8001 3.5420 1.4016 23 6 4.4407 4.9318 1.4093 24 7 5.8534 4.8231 1.0235 25 6 6.5358 6.1175 1.1535 26 6 5.9928 4.2890 -0.3373 27 6 5.3985 2.8800 -0.3971 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.4600 4.7406 -0.8800 34 1 4.0050 2.3966 -2.3201 35 1 1.5369 2.1575 -2.3381 36 1 1.3802 3.8214 -2.9509 37 1 1.2371 2.1739 -4.7991 38 1 2.8383 1.5365 -4.3549 39 1 2.2419 4.4012 -5.2237 40 1 1.6126 3.0302 -9.4864 41 1 4.7102 4.6396 -5.2058 42 1 4.8664 2.9763 -4.5922 43 1 3.4081 5.2616 -3.1878 44 1 5.0094 4.6238 -2.7438 45 1 2.7477 3.6248 1.6727 46 1 4.3121 2.9012 2.1196 47 1 4.3692 5.3592 2.4094 48 1 3.9194 5.5758 0.7011 49 1 6.1006 6.8296 0.4523 50 1 6.4169 6.4904 2.1708 51 1 7.5961 5.9930 0.9338 52 1 7.0485 4.2496 -0.6056 53 1 5.4641 4.9362 -1.0372 54 1 5.9356 2.2290 0.2926 55 1 5.4880 2.4894 -1.4107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330271.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:39 Heat of formation + Delta-G solvation = -114.521691 kcal Electronic energy + Delta-G solvation = -32682.824250 eV Core-core repulsion = 28718.040531 eV Total energy + Delta-G solvation = -3964.783719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.31242 -40.44596 -39.20266 -37.69389 -36.42708 -34.65942 -32.95731 -32.51000 -31.99264 -31.48668 -29.90807 -28.01254 -25.96449 -25.21099 -24.45208 -23.70293 -23.33285 -22.25104 -22.04783 -20.63977 -19.95436 -18.97094 -18.67975 -17.92693 -17.67028 -16.89470 -16.67609 -16.30891 -16.14044 -15.77557 -15.31628 -15.14931 -15.08443 -14.81057 -14.69404 -14.49501 -14.35213 -14.26422 -13.84889 -13.61879 -13.49758 -13.46034 -13.06998 -12.95730 -12.87715 -12.82590 -12.64661 -12.50038 -12.48515 -12.38246 -12.32353 -12.12241 -11.93297 -11.80263 -11.74909 -11.68632 -11.50489 -11.24245 -11.13845 -10.93427 -10.74840 -10.60251 -9.55164 -9.22782 -8.27474 -6.30793 1.06810 1.34796 1.37370 1.48873 1.66130 2.36660 2.84475 2.94360 3.08640 3.42671 3.61112 3.71231 3.80359 3.96259 3.99419 4.05632 4.08380 4.17830 4.19622 4.25939 4.32569 4.33575 4.43337 4.51602 4.53752 4.61957 4.65472 4.69734 4.73544 4.76075 4.81560 4.85278 4.88421 4.89176 4.93025 4.94503 4.99584 5.08045 5.09639 5.12314 5.15560 5.19009 5.25185 5.36793 5.42802 5.46156 5.61272 5.71491 5.82050 5.86743 6.05029 6.10503 6.30597 6.35685 6.72270 6.77088 7.35235 8.90103 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.004076 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.606933 B = 6868.510776 C = 8521.847106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.337 6.337 4 C 0.478 3.522 5 O -0.542 6.542 6 C 0.130 3.870 7 N -0.655 5.655 8 C 0.094 3.906 9 C -0.093 4.093 10 C -0.105 4.105 11 C 0.015 3.985 12 C -0.515 4.515 13 H 0.024 0.976 14 C 0.008 3.992 15 N -0.956 5.956 16 Si 0.943 3.057 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.242 1.242 20 C -0.095 4.095 21 C -0.126 4.126 22 C -0.098 4.098 23 C 0.057 3.943 24 N -0.553 5.553 25 C 0.024 3.976 26 C 0.058 3.942 27 C -0.132 4.132 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.358 0.642 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.047 0.953 49 H 0.031 0.969 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.086 0.914 53 H 0.045 0.955 54 H 0.076 0.924 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 5.573 26.985 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.252 6.252 4 C 0.321 3.679 5 O -0.431 6.431 6 C 0.037 3.963 7 N -0.291 5.291 8 C -0.015 4.015 9 C -0.131 4.131 10 C -0.144 4.144 11 C -0.004 4.004 12 C -0.553 4.553 13 H 0.043 0.957 14 C -0.188 4.188 15 N -0.596 5.596 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.218 1.218 19 H -0.165 1.165 20 C -0.134 4.134 21 C -0.164 4.164 22 C -0.136 4.136 23 C -0.070 4.070 24 N -0.278 5.278 25 C -0.123 4.123 26 C -0.070 4.070 27 C -0.172 4.172 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.105 0.895 53 H 0.062 0.938 54 H 0.095 0.905 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.935 4.611 27.253 27.656 hybrid contribution 0.178 0.235 -1.770 1.794 sum 1.112 4.846 25.483 25.963 Atomic orbital electron populations 1.21783 0.90479 1.04124 1.03652 1.23250 0.97200 0.79949 1.01950 1.86612 1.23531 1.32509 1.82587 1.23937 0.80942 0.92301 0.70700 1.90647 1.61396 1.43912 1.47149 1.20898 0.91307 0.87088 0.96962 1.60633 1.58895 1.06576 1.02969 1.21487 0.95989 0.96955 0.87094 1.21476 0.96674 1.00912 0.94088 1.21673 0.99104 0.98733 0.94905 1.19123 0.94287 0.94446 0.92510 1.21378 1.06887 1.32601 0.94438 0.95747 1.25985 1.01006 0.97266 0.94541 1.70072 1.37876 1.47523 1.04169 0.85796 0.78660 0.79499 0.79363 1.18970 1.21811 1.16517 1.21387 0.97578 0.99492 0.94920 1.22108 1.00829 0.98333 0.95139 1.21653 1.02994 0.97296 0.91632 1.22151 0.87027 0.95266 1.02603 1.61942 1.14105 1.27476 1.24308 1.22406 0.99219 0.88310 1.02377 1.22144 1.01678 0.93646 0.89560 1.22135 0.94146 0.98739 1.02181 0.92149 0.88438 0.90539 0.92810 0.90857 0.81819 0.93589 0.92333 0.91771 0.94454 0.94893 0.94828 0.92720 0.92957 0.94383 0.90607 0.90475 0.88499 0.90345 0.87907 0.93485 0.95075 0.89951 0.91075 0.89543 0.93752 0.90534 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.29 71.98 0.74 -1.68 16 2 C 0.05 1.14 6.19 71.98 0.45 1.58 16 3 O -0.34 -8.91 9.21 -51.39 -0.47 -9.39 16 4 C 0.48 13.41 5.67 71.23 0.40 13.81 16 5 O -0.54 -18.11 15.71 21.94 0.34 -17.76 16 6 C 0.13 2.92 0.62 2.86 0.00 2.92 16 7 N -0.66 -14.86 5.77 -451.57 -2.61 -17.46 16 8 C 0.09 2.71 1.50 44.91 0.07 2.78 16 9 C -0.09 -3.12 5.53 30.59 0.17 -2.95 16 10 C -0.11 -4.44 5.19 30.60 0.16 -4.28 16 11 C 0.02 0.69 1.73 -11.54 -0.02 0.67 16 12 C -0.52 -29.69 8.86 25.60 0.23 -29.46 16 13 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 14 C 0.01 0.48 5.47 84.65 0.46 0.94 16 15 N -0.96 -60.77 13.96 21.45 0.30 -60.47 16 16 Si 0.94 44.44 26.90 68.60 1.85 46.29 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.24 -10.50 6.87 99.48 0.68 -9.82 16 20 C -0.10 -3.66 5.19 30.61 0.16 -3.51 16 21 C -0.13 -3.57 4.86 30.61 0.15 -3.42 16 22 C -0.10 -1.64 5.06 30.65 0.16 -1.48 16 23 C 0.06 0.76 5.23 86.32 0.45 1.21 16 24 N -0.55 -8.46 4.91 -922.59 -4.53 -12.99 16 25 C 0.02 0.28 9.59 127.69 1.22 1.50 16 26 C 0.06 1.03 5.02 86.33 0.43 1.46 16 27 C -0.13 -3.03 4.04 30.65 0.12 -2.91 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.37 8.13 -2.38 -0.02 1.35 16 32 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.36 6.84 4.78 -89.69 -0.43 6.41 16 34 H 0.05 1.51 5.37 -2.39 -0.01 1.50 16 35 H 0.06 1.92 7.26 -2.39 -0.02 1.91 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.03 1.51 5.38 -2.39 -0.01 1.50 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 1.82 5.84 -2.38 -0.01 1.80 16 45 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.10 1.01 8.09 -2.39 -0.02 0.99 16 48 H 0.05 0.60 6.54 -2.39 -0.02 0.58 16 49 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.09 1.49 8.12 -2.38 -0.02 1.47 16 53 H 0.04 0.78 4.69 -2.38 -0.01 0.76 16 54 H 0.08 1.92 7.85 -2.39 -0.02 1.90 16 55 H 0.06 1.68 6.12 -2.39 -0.01 1.67 16 Total: -1.00 -70.62 404.14 0.64 -69.98 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.41 Total: 24.61 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 5.35 Total: -22.79 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -6.84 Total: -90.92 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.13 Total: -27.15 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.85 Total: 46.29 kcal Total: -70.62 0.64 -69.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330271.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.546 kcal (2) G-P(sol) polarization free energy of solvation -70.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds