Wall clock time and date at job start Tue Mar 31 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47135 * 2 1 4 4 C 1.34227 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99936 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47404 * 173.78909 * 6 4 3 8 8 C 1.46852 * 110.99665 * 293.64393 * 7 6 4 9 9 C 1.53035 * 109.51457 * 174.16363 * 8 7 6 10 10 C 1.53103 * 109.28992 * 59.18268 * 9 8 7 11 11 N 1.46901 * 109.57566 * 182.40580 * 10 9 8 12 12 C 1.46902 * 110.99856 * 274.70822 * 11 10 9 13 13 C 1.52995 * 109.47183 * 275.00457 * 12 11 10 14 14 C 1.53002 * 109.47039 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47300 * 59.99966 * 14 13 12 16 16 C 1.50694 * 109.47157 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00130 * 119.99819 * 16 15 14 18 18 C 1.37878 * 120.00189 * 300.00016 * 16 15 14 19 19 N 1.31514 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00310 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47073 * 89.99302 * 20 18 16 22 22 H 1.48491 * 109.47132 * 209.99806 * 20 18 16 23 23 H 1.48500 * 109.46996 * 329.99968 * 20 18 16 24 24 C 1.53001 * 109.46644 * 299.99839 * 15 14 13 25 25 C 1.52995 * 109.47261 * 60.00332 * 24 15 14 26 26 C 1.53120 * 109.15344 * 302.33951 * 10 9 8 27 27 C 1.46841 * 111.00233 * 169.43347 * 7 6 4 28 28 H 1.09003 * 109.47207 * 300.00218 * 1 2 3 29 29 H 1.08992 * 109.47179 * 60.00085 * 1 2 3 30 30 H 1.08999 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47313 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.46659 * 119.99639 * 2 1 3 33 33 H 1.09004 * 109.47410 * 53.78845 * 6 4 3 34 34 H 1.09004 * 109.47694 * 293.78968 * 6 4 3 35 35 H 1.09003 * 109.46214 * 294.17676 * 8 7 6 36 36 H 1.09006 * 109.46235 * 54.15348 * 8 7 6 37 37 H 1.08998 * 109.50265 * 179.11486 * 9 8 7 38 38 H 1.09004 * 109.50432 * 299.23263 * 9 8 7 39 39 H 1.09002 * 109.52263 * 62.24321 * 10 9 8 40 40 H 1.00902 * 110.99947 * 150.75559 * 11 10 9 41 41 H 1.08999 * 109.47007 * 35.00215 * 12 11 10 42 42 H 1.09008 * 109.47157 * 299.99853 * 13 12 11 43 43 H 1.09001 * 109.47345 * 59.99725 * 13 12 11 44 44 H 1.08999 * 109.46946 * 299.99632 * 14 13 12 45 45 H 1.09006 * 109.46929 * 179.97438 * 14 13 12 46 46 H 1.08997 * 109.46912 * 59.99742 * 15 14 13 47 47 H 0.97006 * 120.00112 * 180.02562 * 19 18 16 48 48 H 1.08999 * 109.47308 * 300.00154 * 24 15 14 49 49 H 1.09001 * 109.46505 * 179.97438 * 24 15 14 50 50 H 1.08998 * 109.47675 * 179.97438 * 25 24 15 51 51 H 1.09001 * 109.47841 * 59.99733 * 25 24 15 52 52 H 1.08996 * 109.50213 * 297.70960 * 26 10 9 53 53 H 1.09000 * 109.53430 * 177.61543 * 26 10 9 54 54 H 1.08995 * 109.46206 * 305.84996 * 27 7 6 55 55 H 1.09004 * 109.46361 * 65.83726 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3801 2.8638 0.1506 8 6 5.7470 2.3414 1.4731 9 6 7.2627 2.1419 1.5415 10 6 7.9610 3.4809 1.2895 11 7 9.4170 3.2858 1.2966 12 6 9.9494 3.3460 2.6645 13 6 10.2089 4.8044 3.0470 14 6 10.7640 4.8670 4.4714 15 6 12.0742 4.0801 4.5432 16 6 12.6213 4.1423 5.9459 17 1 12.7691 3.2324 6.5088 18 6 12.9332 5.3607 6.5109 19 7 12.7537 6.4686 5.8254 20 14 13.6120 5.4378 8.2495 21 1 15.0943 5.3584 8.2061 22 1 13.2031 6.7163 8.8843 23 1 13.0785 4.2996 9.0401 24 6 11.8146 2.6216 4.1606 25 6 11.2596 2.5590 2.7363 26 6 7.5245 4.0265 -0.0730 27 6 6.0011 4.1716 -0.0947 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.4982 3.5057 0.8286 34 1 3.6770 3.4311 -0.9408 35 1 5.4388 3.0502 2.2418 36 1 5.2472 1.3868 1.6380 37 1 7.5365 1.7691 2.5285 38 1 7.5698 1.4227 0.7821 39 1 7.6844 4.1887 2.0710 40 1 9.8749 3.9588 0.7004 41 1 9.2263 2.9123 3.3552 42 1 10.9320 5.2382 2.3562 43 1 9.2756 5.3652 2.9955 44 1 10.0413 4.4332 5.1624 45 1 10.9493 5.9061 4.7438 46 1 12.7969 4.5140 3.8521 47 1 12.9734 7.3258 6.2227 48 1 11.0919 2.1878 4.8516 49 1 12.7481 2.0611 4.2113 50 1 11.0750 1.5200 2.4635 51 1 11.9822 2.9928 2.0451 52 1 7.8357 3.3371 -0.8577 53 1 7.9852 5.0001 -0.2403 54 1 5.6859 4.5464 -1.0685 55 1 5.6921 4.8717 0.6814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334239.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:13 Heat of formation + Delta-G solvation = -122.306347 kcal Electronic energy + Delta-G solvation = -30092.459641 eV Core-core repulsion = 26127.338354 eV Total energy + Delta-G solvation = -3965.121287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62888 -40.39611 -39.26565 -37.64903 -36.42251 -34.59479 -32.94862 -32.39811 -31.84570 -31.30807 -29.92688 -28.04323 -26.10819 -24.45819 -24.14379 -23.39239 -23.14900 -21.94498 -21.81241 -20.80328 -20.33454 -18.72334 -18.39134 -17.74496 -17.42504 -17.03642 -16.66701 -16.23779 -16.17724 -16.00620 -15.25160 -15.08464 -14.99257 -14.89470 -14.59186 -14.39285 -14.13758 -14.03301 -13.77920 -13.59334 -13.46186 -13.33366 -13.09477 -12.90532 -12.87036 -12.76515 -12.59760 -12.49490 -12.36297 -12.20141 -12.11861 -12.09430 -11.82281 -11.72408 -11.62247 -11.50994 -11.33542 -11.18851 -11.14106 -10.76574 -10.56117 -10.37266 -9.38427 -9.21245 -8.07181 -6.21167 1.19730 1.39510 1.40252 1.50324 1.56746 2.43054 2.86676 3.16341 3.19794 3.69882 3.81569 3.90945 3.98254 4.00164 4.08624 4.10785 4.16757 4.23784 4.31148 4.33146 4.35976 4.44895 4.47602 4.55532 4.59018 4.64796 4.68569 4.73284 4.82217 4.83207 4.88539 4.90531 4.92524 4.95777 4.98137 5.10018 5.13080 5.15648 5.24686 5.26963 5.35021 5.38399 5.45711 5.47189 5.47589 5.61659 5.69013 5.90576 6.02358 6.04622 6.20844 6.22909 6.42748 6.58565 6.79570 6.91444 7.46553 8.96181 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.001869 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.154945 B =14981.190512 C =15315.411604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.524 6.524 6 C 0.065 3.935 7 N -0.539 5.539 8 C 0.059 3.941 9 C -0.094 4.094 10 C 0.088 3.912 11 N -0.679 5.679 12 C 0.105 3.895 13 C -0.129 4.129 14 C -0.097 4.097 15 C 0.046 3.954 16 C -0.536 4.536 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.270 1.270 24 C -0.102 4.102 25 C -0.092 4.092 26 C -0.112 4.112 27 C 0.065 3.935 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.344 0.656 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.056 0.944 46 H -0.007 1.007 47 H 0.259 0.741 48 H 0.044 0.956 49 H 0.045 0.955 50 H 0.066 0.934 51 H 0.052 0.948 52 H 0.074 0.926 53 H 0.081 0.919 54 H 0.104 0.896 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.765 -6.316 -15.673 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.412 6.412 6 C -0.064 4.064 7 N -0.265 5.265 8 C -0.069 4.069 9 C -0.133 4.133 10 C -0.022 4.022 11 N -0.309 5.309 12 C -0.005 4.005 13 C -0.168 4.168 14 C -0.136 4.136 15 C 0.028 3.972 16 C -0.574 4.574 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.062 4.062 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.163 0.837 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.163 0.837 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.011 0.989 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.093 0.907 53 H 0.099 0.901 54 H 0.122 0.878 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.426 -7.468 -16.029 30.155 hybrid contribution 0.492 1.419 2.066 2.555 sum -23.934 -6.048 -13.963 28.361 Atomic orbital electron populations 1.21817 0.90428 1.04274 1.03774 1.23224 0.97004 0.79332 1.02290 1.86488 1.24103 1.33551 1.83945 1.24102 0.80529 0.93341 0.71853 1.90679 1.60922 1.44105 1.45461 1.21702 0.88163 0.89542 1.06954 1.61539 1.06917 1.27380 1.30664 1.22093 0.96425 0.99706 0.88651 1.21434 0.93154 0.97547 1.01159 1.21558 0.87603 0.95686 0.97377 1.60641 1.04011 1.56654 1.09571 1.21384 0.96005 0.93687 0.89424 1.22130 0.99304 0.97455 0.97915 1.21332 0.96576 1.01869 0.93817 1.18620 0.92904 0.91633 0.94088 1.21653 1.42307 0.92418 1.01011 0.93308 1.25724 0.96001 0.95580 1.01317 1.70018 1.49286 0.97895 1.38364 0.85674 0.78709 0.77432 0.80553 1.20184 1.20835 1.19481 1.21501 0.99043 0.97660 0.95804 1.21383 0.95872 0.99809 0.95965 1.21719 0.95321 1.01647 0.96308 1.22116 0.93825 0.87664 1.02626 0.91324 0.91017 0.88491 0.91479 0.91852 0.88822 0.83667 0.94505 0.91296 0.92858 0.91827 0.94863 0.83690 0.91883 0.93227 0.93064 0.95885 0.92527 0.98916 0.93160 0.93754 0.93662 0.91490 0.92925 0.90734 0.90064 0.87782 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 71.98 0.74 -0.36 16 2 C 0.06 0.75 6.19 71.98 0.45 1.19 16 3 O -0.36 -6.00 10.22 -51.39 -0.53 -6.53 16 4 C 0.46 8.74 7.49 71.23 0.53 9.27 16 5 O -0.52 -13.87 14.46 21.97 0.32 -13.56 16 6 C 0.06 0.86 5.56 85.56 0.48 1.34 16 7 N -0.54 -9.81 4.35 -900.91 -3.92 -13.73 16 8 C 0.06 1.30 5.12 86.32 0.44 1.74 16 9 C -0.09 -2.36 5.58 30.64 0.17 -2.19 16 10 C 0.09 2.08 2.36 44.99 0.11 2.18 16 11 N -0.68 -18.42 6.06 -469.08 -2.84 -21.26 16 12 C 0.10 3.46 2.28 44.91 0.10 3.56 16 13 C -0.13 -4.83 5.16 30.59 0.16 -4.67 16 14 C -0.10 -4.64 4.98 30.60 0.15 -4.49 16 15 C 0.05 2.35 2.10 -11.54 -0.02 2.32 16 16 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 17 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 18 C 0.01 0.68 5.30 84.65 0.45 1.13 16 19 N -0.92 -53.53 11.32 21.45 0.24 -53.28 16 20 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 C -0.10 -4.33 5.14 30.59 0.16 -4.17 16 25 C -0.09 -3.26 5.53 30.59 0.17 -3.09 16 26 C -0.11 -2.03 5.36 30.65 0.16 -1.87 16 27 C 0.06 0.94 5.46 86.33 0.47 1.42 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.09 0.94 8.12 -2.38 -0.02 0.92 16 34 H 0.15 1.12 7.98 -2.38 -0.02 1.10 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 1.71 6.06 -2.38 -0.01 1.69 16 37 H 0.05 1.44 7.49 -2.39 -0.02 1.43 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.03 0.86 7.12 -2.39 -0.02 0.84 16 40 H 0.34 8.74 8.10 -89.69 -0.73 8.01 16 41 H 0.06 2.18 7.16 -2.39 -0.02 2.17 16 42 H 0.05 1.89 8.13 -2.38 -0.02 1.87 16 43 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 44 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 3.08 6.07 -2.38 -0.01 3.06 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 48 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 53 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 54 H 0.10 1.04 8.01 -2.39 -0.02 1.02 16 55 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -67.11 417.70 0.35 -66.76 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.11 Total: 21.96 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.93 Total: -26.76 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -6.52 Total: -88.27 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.21 Total: -20.08 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.11 0.35 -66.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334239.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.551 kcal (2) G-P(sol) polarization free energy of solvation -67.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds