Wall clock time and date at job start Tue Mar 31 2020 22:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99565 * 2 1 4 4 H 1.08999 * 109.47537 * 330.00316 * 3 2 1 5 5 C 1.50703 * 109.46674 * 90.00687 * 3 2 1 6 6 O 1.21279 * 120.00469 * 14.30791 * 5 3 2 7 7 N 1.34771 * 119.99601 * 194.31004 * 5 3 2 8 8 C 1.46503 * 120.00420 * 3.84927 * 7 5 3 9 9 C 1.52998 * 109.47399 * 263.23926 * 8 7 5 10 10 C 1.52998 * 109.47337 * 174.88311 * 9 8 7 11 11 N 1.46497 * 109.47386 * 180.02562 * 10 9 8 12 12 C 1.36937 * 120.00296 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99495 * 359.97438 * 12 11 10 14 14 C 1.38809 * 119.99964 * 179.97438 * 12 11 10 15 15 N 1.31607 * 120.00370 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99548 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47176 * 90.00513 * 16 14 12 18 18 H 1.48501 * 109.46954 * 210.00097 * 16 14 12 19 19 H 1.48494 * 109.47343 * 330.00321 * 16 14 12 20 20 C 1.46508 * 119.99963 * 184.12713 * 7 5 3 21 21 C 1.53003 * 109.47007 * 269.72459 * 20 7 5 22 22 C 1.54268 * 110.03244 * 292.90922 * 21 20 7 23 23 C 1.54963 * 104.15778 * 217.13617 * 22 21 20 24 24 C 1.54891 * 102.77662 * 37.88738 * 23 22 21 25 25 C 1.53874 * 110.02975 * 175.68933 * 21 20 7 26 26 C 1.52999 * 109.46790 * 210.00124 * 3 2 1 27 27 C 1.52999 * 117.49593 * 122.39023 * 26 3 2 28 28 C 1.53001 * 117.49964 * 53.73138 * 26 3 2 29 29 H 1.08999 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46932 * 299.99462 * 1 2 3 31 31 H 1.09001 * 109.47798 * 59.99558 * 1 2 3 32 32 H 1.09002 * 109.46636 * 23.23657 * 8 7 5 33 33 H 1.08997 * 109.47165 * 143.23358 * 8 7 5 34 34 H 1.08998 * 109.47132 * 294.88050 * 9 8 7 35 35 H 1.09000 * 109.46919 * 54.88161 * 9 8 7 36 36 H 1.09011 * 109.46844 * 300.00215 * 10 9 8 37 37 H 1.09006 * 109.47243 * 59.99617 * 10 9 8 38 38 H 0.97002 * 119.99835 * 359.97438 * 11 10 9 39 39 H 0.97001 * 120.00596 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46654 * 29.72389 * 20 7 5 41 41 H 1.08998 * 109.46978 * 149.72634 * 20 7 5 42 42 H 1.08996 * 110.01573 * 54.29479 * 21 20 7 43 43 H 1.08999 * 110.48487 * 335.77805 * 22 21 20 44 44 H 1.08998 * 110.48776 * 98.42282 * 22 21 20 45 45 H 1.08998 * 110.72427 * 279.57164 * 23 22 21 46 46 H 1.09001 * 110.92254 * 156.29061 * 23 22 21 47 47 H 1.09005 * 110.48477 * 203.40454 * 24 23 22 48 48 H 1.08999 * 110.59969 * 80.82120 * 24 23 22 49 49 H 1.09003 * 110.02820 * 238.56747 * 25 21 20 50 50 H 1.08996 * 110.03312 * 359.95446 * 25 21 20 51 51 H 1.08999 * 115.55286 * 268.05831 * 26 3 2 52 52 H 1.08999 * 117.50310 * 359.97438 * 27 26 3 53 53 H 1.09004 * 117.50199 * 145.02378 * 27 26 3 54 54 H 1.09001 * 117.50278 * 214.97837 * 28 26 3 55 55 H 1.09001 * 117.49468 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2145 1.7643 1.4209 6 8 2.1438 0.9668 2.3318 7 7 2.4760 3.0609 1.6793 8 6 2.4781 4.0393 0.5888 9 6 3.9131 4.2638 0.1078 10 6 3.9034 5.1865 -1.1126 11 7 5.2773 5.4010 -1.5735 12 6 5.5183 6.1981 -2.6607 13 1 4.6954 6.6682 -3.1785 14 6 6.8202 6.4017 -3.0970 15 7 7.8230 5.8283 -2.4663 16 14 7.1487 7.4884 -4.5805 17 1 7.3433 8.8910 -4.1332 18 1 8.3721 7.0172 -5.2781 19 1 5.9922 7.4210 -5.5094 20 6 2.7640 3.4911 3.0498 21 6 1.4597 3.8869 3.7449 22 6 0.8753 5.1551 3.0893 23 6 0.2770 5.9534 4.2751 24 6 1.3057 5.7083 5.4068 25 6 1.7330 4.2381 5.2179 26 6 3.3588 1.2634 -0.7213 27 6 3.5450 2.1885 -1.9256 28 6 3.3856 0.6806 -2.1357 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8727 3.6646 -0.2366 33 1 2.0628 4.9818 0.9454 34 1 4.4961 4.7231 0.9059 35 1 4.3591 3.3070 -0.1637 36 1 3.3202 4.7271 -1.9108 37 1 3.4573 6.1433 -0.8412 38 1 6.0164 4.9784 -1.1087 39 1 8.7327 5.9703 -2.7715 40 1 3.2333 2.6730 3.5963 41 1 3.4382 4.3473 3.0277 42 1 0.7411 3.0697 3.6830 43 1 1.6626 5.7298 2.6015 44 1 0.0960 4.8906 2.3746 45 1 -0.7014 5.5597 4.5505 46 1 0.2113 7.0149 4.0361 47 1 0.8400 5.8479 6.3825 48 1 2.1632 6.3721 5.2960 49 1 1.1463 3.5919 5.8708 50 1 2.7947 4.1259 5.4377 51 1 4.2262 1.0832 -0.0863 52 1 2.7066 2.8268 -2.2043 53 1 4.5350 2.6165 -2.0832 54 1 4.2707 0.1173 -2.4314 55 1 2.4424 0.3269 -2.5522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177304517.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:50 Heat of formation + Delta-G solvation = -70.366268 kcal Electronic energy + Delta-G solvation = -31646.054973 eV Core-core repulsion = 27683.185977 eV Total energy + Delta-G solvation = -3962.868996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70157 -39.55886 -38.54711 -37.98808 -36.85921 -36.18934 -33.85311 -31.96716 -30.93719 -29.66463 -29.37036 -27.22626 -27.01270 -25.37850 -24.51373 -23.23066 -22.60322 -22.14910 -21.50080 -20.72289 -20.16671 -19.03236 -18.67801 -17.97265 -17.07108 -16.94520 -16.66967 -16.54531 -16.17675 -15.85302 -15.56483 -15.45359 -15.36705 -15.08018 -14.88716 -14.53156 -14.24460 -14.14597 -13.90924 -13.54032 -13.46015 -13.08007 -12.80147 -12.72044 -12.59767 -12.48048 -12.39639 -12.29028 -12.08750 -11.97577 -11.97192 -11.87080 -11.83579 -11.79659 -11.66980 -11.58609 -11.44061 -11.31489 -11.25512 -11.07389 -10.78976 -10.26533 -9.68460 -8.89898 -7.88627 -5.15654 1.44437 1.51663 1.52008 1.60328 1.84218 2.46317 2.61364 3.14090 3.39653 3.46384 3.63638 3.68460 3.72303 3.77856 3.79095 3.95481 4.00422 4.04513 4.18051 4.27701 4.36574 4.39053 4.41815 4.49611 4.50546 4.55776 4.57395 4.63830 4.67140 4.69516 4.76685 4.79844 4.81984 4.85575 4.87950 4.94071 4.98875 5.04501 5.08812 5.09414 5.14991 5.26062 5.30608 5.32594 5.36901 5.44895 5.48143 5.48696 5.58489 5.62195 5.98416 6.32262 6.34398 7.08894 7.40621 8.19096 8.39711 9.35044 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.003574 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.257712 B = 7831.593472 C =10240.683619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.378 6.378 3 C 0.113 3.887 4 H 0.108 0.892 5 C 0.493 3.507 6 O -0.570 6.570 7 N -0.594 5.594 8 C 0.112 3.888 9 C -0.140 4.140 10 C 0.156 3.844 11 N -0.743 5.743 12 C -0.234 4.234 13 H 0.078 0.922 14 C -0.076 4.076 15 N -0.971 5.971 16 Si 0.966 3.034 17 H -0.291 1.291 18 H -0.301 1.301 19 H -0.267 1.267 20 C 0.120 3.880 21 C -0.098 4.098 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.153 4.153 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.021 0.979 38 H 0.371 0.629 39 H 0.248 0.752 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.089 0.911 52 H 0.112 0.888 53 H 0.088 0.912 54 H 0.095 0.905 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 -4.960 9.964 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.295 6.295 3 C 0.052 3.948 4 H 0.125 0.875 5 C 0.281 3.719 6 O -0.449 6.449 7 N -0.326 5.326 8 C -0.010 4.010 9 C -0.178 4.178 10 C 0.030 3.970 11 N -0.385 5.385 12 C -0.366 4.366 13 H 0.096 0.904 14 C -0.268 4.268 15 N -0.622 5.622 16 Si 0.796 3.204 17 H -0.218 1.218 18 H -0.228 1.228 19 H -0.192 1.192 20 C -0.003 4.003 21 C -0.118 4.118 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.156 4.156 26 C -0.179 4.179 27 C -0.187 4.187 28 C -0.190 4.190 29 H 0.120 0.880 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.131 0.869 53 H 0.106 0.894 54 H 0.113 0.887 55 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.366 -5.457 10.298 22.602 hybrid contribution 1.027 0.451 -0.333 1.170 sum -18.339 -5.006 9.965 21.464 Atomic orbital electron populations 1.23057 0.79398 1.04331 1.00567 1.88000 1.21427 1.25752 1.94365 1.21573 0.95567 0.86577 0.91045 0.87472 1.21627 0.76067 0.82017 0.92177 1.90657 1.52083 1.54141 1.48028 1.48008 1.68552 1.07126 1.08924 1.21813 0.96606 0.93321 0.89275 1.22186 0.97435 1.00687 0.97516 1.20765 0.86145 0.96029 0.94069 1.42541 1.03569 1.58034 1.34367 1.19618 0.92117 1.20167 1.04668 0.90365 1.25465 0.95787 1.03000 1.02532 1.69805 0.98418 1.49940 1.44067 0.85244 0.77099 0.78318 0.79760 1.21799 1.22774 1.19187 1.21685 0.97155 1.00069 0.81353 1.22044 0.96255 0.98002 0.95452 1.22520 1.00078 0.95112 0.97813 1.22506 0.98438 1.00263 0.94849 1.22354 0.99062 0.95488 0.99068 1.22131 1.01558 0.97233 0.94704 1.21922 0.95480 1.09088 0.91416 1.23204 1.03935 0.93062 0.98479 1.22981 1.04052 0.96219 0.95744 0.87987 0.94773 0.91557 0.88741 0.88124 0.92942 0.91047 0.94436 0.96138 0.79768 0.94315 0.92030 0.89331 0.92753 0.91004 0.91640 0.91513 0.90802 0.90983 0.91423 0.91852 0.91627 0.89289 0.86942 0.89389 0.88668 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.63 16 2 O -0.38 -9.83 9.72 -130.34 -1.27 -11.09 16 3 C 0.11 2.73 1.96 29.85 0.06 2.78 16 4 H 0.11 1.99 5.86 -2.39 -0.01 1.98 16 5 C 0.49 13.83 6.88 87.66 0.60 14.44 16 6 O -0.57 -20.41 16.18 15.61 0.25 -20.16 16 7 N -0.59 -13.91 2.39 -821.79 -1.97 -15.88 16 8 C 0.11 2.31 4.66 86.38 0.40 2.72 16 9 C -0.14 -3.84 4.67 30.59 0.14 -3.70 16 10 C 0.16 5.28 5.66 86.38 0.49 5.77 16 11 N -0.74 -34.75 5.60 -343.44 -1.92 -36.68 16 12 C -0.23 -12.28 9.99 84.03 0.84 -11.44 16 13 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 14 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 15 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 16 Si 0.97 44.83 29.55 68.60 2.03 46.85 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 C 0.12 2.70 4.53 86.38 0.39 3.09 16 21 C -0.10 -1.90 3.15 -10.07 -0.03 -1.93 16 22 C -0.12 -1.91 5.12 31.70 0.16 -1.75 16 23 C -0.12 -1.75 6.91 31.91 0.22 -1.53 16 24 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 25 C -0.12 -2.02 6.46 31.32 0.20 -1.81 16 26 C -0.16 -4.08 3.71 -10.79 -0.04 -4.12 16 27 C -0.15 -3.75 6.14 30.62 0.19 -3.56 16 28 C -0.15 -3.53 10.04 30.62 0.31 -3.22 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.09 1.65 5.16 -2.39 -0.01 1.63 16 33 H 0.10 1.77 5.58 -2.39 -0.01 1.76 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.13 4.45 -2.39 -0.01 2.12 16 36 H 0.04 1.19 6.32 -2.38 -0.02 1.17 16 37 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.37 19.03 7.67 -92.71 -0.71 18.32 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.06 1.63 7.47 -2.39 -0.02 1.62 16 41 H 0.09 1.85 7.95 -2.39 -0.02 1.83 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.18 6.32 -2.39 -0.02 1.16 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 1.12 7.67 -2.39 -0.02 1.11 16 51 H 0.09 2.65 7.98 -2.39 -0.02 2.63 16 52 H 0.11 2.43 6.70 -2.39 -0.02 2.41 16 53 H 0.09 2.80 7.57 -2.39 -0.02 2.79 16 54 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 55 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.48 417.61 3.41 -65.08 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.16 Total: 37.72 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.84 Total: -7.93 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.61 Total: -110.47 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.01 Total: -31.25 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.48 3.41 -65.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177304517.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.291 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds