Wall clock time and date at job start Tue Mar 31 2020 22:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00614 * 2 1 4 4 C 1.53778 * 113.61939 * 149.99770 * 3 2 1 5 5 C 1.53774 * 87.08222 * 89.19907 * 4 3 2 6 6 C 1.50701 * 113.61596 * 139.98173 * 5 4 3 7 7 O 1.21284 * 119.99807 * 5.20720 * 6 5 4 8 8 N 1.34769 * 120.00417 * 185.20848 * 6 5 4 9 9 C 1.46500 * 120.00387 * 182.50570 * 8 6 5 10 10 C 1.53000 * 109.47105 * 269.99975 * 9 8 6 11 11 C 1.53000 * 109.47139 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47134 * 180.02562 * 11 10 9 13 13 C 1.36941 * 119.99742 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99633 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00036 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99837 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47026 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46761 * 119.99741 * 17 15 13 20 20 H 1.48493 * 109.47108 * 239.99441 * 17 15 13 21 21 C 1.46502 * 120.00019 * 2.50770 * 8 6 5 22 22 C 1.52997 * 109.47109 * 261.09558 * 21 8 6 23 23 C 1.54965 * 110.92577 * 74.52647 * 22 21 8 24 24 C 1.54260 * 104.16278 * 156.29838 * 23 22 21 25 25 C 1.53870 * 106.64132 * 336.44270 * 24 23 22 26 26 C 1.54263 * 106.59844 * 359.97438 * 25 24 23 27 27 C 1.53784 * 87.16996 * 25.39260 * 5 4 3 28 28 H 1.08998 * 109.47075 * 60.00128 * 1 2 3 29 29 H 1.08999 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46965 * 300.00493 * 1 2 3 31 31 H 1.09005 * 112.84499 * 18.79874 * 3 2 1 32 32 H 1.09006 * 113.61143 * 334.65140 * 4 3 2 33 33 H 1.08998 * 113.61758 * 203.75362 * 4 3 2 34 34 H 1.08999 * 113.61893 * 270.80634 * 5 4 3 35 35 H 1.08999 * 109.47141 * 29.99682 * 9 8 6 36 36 H 1.09001 * 109.47165 * 149.99753 * 9 8 6 37 37 H 1.08994 * 109.47268 * 300.00079 * 10 9 8 38 38 H 1.09001 * 109.46852 * 60.00160 * 10 9 8 39 39 H 1.09007 * 109.47152 * 300.00102 * 11 10 9 40 40 H 1.08993 * 109.47291 * 59.99833 * 11 10 9 41 41 H 0.96998 * 119.99917 * 0.02562 * 12 11 10 42 42 H 0.97007 * 120.00036 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47851 * 141.09390 * 21 8 6 44 44 H 1.09005 * 109.47160 * 21.09375 * 21 8 6 45 45 H 1.08999 * 110.67428 * 311.22014 * 22 21 8 46 46 H 1.08998 * 110.47506 * 37.63686 * 23 22 21 47 47 H 1.09003 * 110.52960 * 274.97529 * 23 22 21 48 48 H 1.08999 * 110.03341 * 217.13693 * 24 23 22 49 49 H 1.09005 * 110.03875 * 95.75620 * 24 23 22 50 50 H 1.09005 * 110.03560 * 119.25984 * 25 24 23 51 51 H 1.08996 * 110.03362 * 240.64441 * 25 24 23 52 52 H 1.09001 * 110.48959 * 142.28244 * 26 25 24 53 53 H 1.08997 * 110.48727 * 264.80028 * 26 25 24 54 54 H 1.08997 * 113.61359 * 89.16148 * 27 5 4 55 55 H 1.09003 * 113.60984 * 220.05675 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0063 1.0350 -0.6569 6 6 5.2713 1.8026 -0.9426 7 8 5.7472 2.5252 -0.0927 8 7 5.8739 1.6862 -2.1425 9 6 7.1328 2.3891 -2.4013 10 6 6.8340 3.7767 -2.9725 11 6 8.1489 4.5112 -3.2422 12 7 7.8627 5.8401 -3.7885 13 6 8.8919 6.6848 -4.1088 14 1 9.9144 6.3712 -3.9590 15 6 8.6208 7.9441 -4.6259 16 7 7.3746 8.3261 -4.8089 17 14 10.0247 9.0962 -5.0634 18 1 11.3198 8.4335 -4.7659 19 1 9.9592 9.4294 -6.5091 20 1 9.9108 10.3416 -4.2628 21 6 5.2698 0.8566 -3.1880 22 6 5.9561 -0.5106 -3.2144 23 6 5.5053 -1.3794 -2.0129 24 6 5.7533 -2.8282 -2.4808 25 6 5.7387 -2.8032 -4.0192 26 6 5.4815 -1.3397 -4.4336 27 6 2.7536 1.6494 -1.3035 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.3138 2.0788 0.3237 32 1 3.5175 0.5947 1.4557 33 1 3.6305 2.3666 1.0698 34 1 4.1106 -0.0349 -0.8372 35 1 7.6898 2.4918 -1.4700 36 1 7.7255 1.8210 -3.1183 37 1 6.2771 3.6741 -3.9037 38 1 6.2415 4.3449 -2.2554 39 1 8.7055 4.6138 -2.3106 40 1 8.7418 3.9432 -3.9590 41 1 6.9443 6.1218 -3.9227 42 1 7.1851 9.2060 -5.1706 43 1 5.3934 1.3438 -4.1552 44 1 4.2078 0.7261 -2.9800 45 1 7.0401 -0.3969 -3.2228 46 1 4.4471 -1.2217 -1.8042 47 1 6.1065 -1.1548 -1.1319 48 1 4.9626 -3.4807 -2.1105 49 1 6.7223 -3.1758 -2.1222 50 1 6.7009 -3.1376 -4.4073 51 1 4.9415 -3.4441 -4.3955 52 1 6.0654 -1.0854 -5.3182 53 1 4.4198 -1.1765 -4.6186 54 1 2.8382 2.7202 -1.4883 55 1 2.3943 1.0962 -2.1712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177345255.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:34 Heat of formation + Delta-G solvation = -82.726405 kcal Electronic energy + Delta-G solvation = -30681.277268 eV Core-core repulsion = 26717.872296 eV Total energy + Delta-G solvation = -3963.404972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80075 -39.79297 -38.98951 -37.50601 -36.53069 -36.26467 -34.08751 -31.91277 -30.51678 -29.55883 -28.34598 -27.28292 -26.81996 -26.35401 -25.50533 -24.29159 -22.57577 -21.37760 -21.22250 -20.89479 -19.66209 -19.13692 -18.64083 -17.44417 -17.08481 -16.74633 -16.60861 -16.50718 -16.22946 -15.99062 -15.88312 -15.44505 -15.28494 -15.15861 -14.67381 -14.63718 -14.40528 -14.03143 -13.59574 -13.54413 -13.50488 -13.23401 -12.98226 -12.91941 -12.83634 -12.69852 -12.42713 -12.35625 -12.24532 -12.05343 -11.98318 -11.92113 -11.84064 -11.82534 -11.70482 -11.59254 -11.50271 -11.28110 -11.09280 -10.97764 -10.69461 -10.41650 -9.64645 -9.04710 -7.98074 -5.28159 1.45405 1.47299 1.57512 1.60469 1.99775 2.54363 2.69747 3.35353 3.40511 3.49498 3.61359 3.71903 3.73653 3.78961 3.87087 3.87532 4.03240 4.16535 4.20492 4.30582 4.34384 4.47190 4.51825 4.57007 4.59079 4.61129 4.61539 4.64948 4.71409 4.73044 4.74756 4.79429 4.81647 4.87706 4.89644 4.90367 4.95072 4.97418 5.04767 5.06890 5.16322 5.19735 5.28360 5.29241 5.31100 5.38525 5.46327 5.51387 5.54199 5.62246 6.24133 6.27280 6.43661 7.19930 7.29615 8.04292 8.28379 9.26010 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.002568 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.144579 B =10900.627903 C =12573.215932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.383 6.383 3 C 0.073 3.927 4 C -0.124 4.124 5 C -0.134 4.134 6 C 0.516 3.484 7 O -0.586 6.586 8 N -0.602 5.602 9 C 0.128 3.872 10 C -0.118 4.118 11 C 0.156 3.844 12 N -0.749 5.749 13 C -0.248 4.248 14 H 0.077 0.923 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.978 3.022 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.293 1.293 21 C 0.109 3.891 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.138 4.138 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.012 0.988 40 H 0.032 0.968 41 H 0.372 0.628 42 H 0.252 0.748 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.069 0.931 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.072 0.928 52 H 0.069 0.931 53 H 0.078 0.922 54 H 0.085 0.915 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.363 -27.828 5.324 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.014 3.986 4 C -0.162 4.162 5 C -0.155 4.155 6 C 0.306 3.694 7 O -0.466 6.466 8 N -0.332 5.332 9 C 0.004 3.996 10 C -0.157 4.157 11 C 0.029 3.971 12 N -0.391 5.391 13 C -0.380 4.380 14 H 0.095 0.905 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.220 1.220 21 C -0.013 4.013 22 C -0.127 4.127 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.152 4.152 27 C -0.176 4.176 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.204 0.796 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.090 0.910 52 H 0.088 0.912 53 H 0.097 0.903 54 H 0.103 0.897 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.807 -27.611 5.749 31.401 hybrid contribution 0.440 1.466 -0.160 1.539 sum -13.367 -26.145 5.589 29.891 Atomic orbital electron populations 1.23020 0.79327 1.03979 1.00921 1.87840 1.21436 1.26320 1.94580 1.22975 0.94224 0.85762 0.95605 1.23085 0.94159 1.03022 0.95920 1.23095 0.90684 1.02109 0.99592 1.21154 0.85911 0.81208 0.81116 1.90684 1.66904 1.41521 1.47459 1.48002 1.23904 1.47644 1.13660 1.21244 0.85809 0.91373 1.01150 1.21824 0.97323 0.96126 1.00452 1.20689 0.95552 0.85416 0.95473 1.42606 1.05796 1.13812 1.76901 1.19708 0.88945 0.95546 1.33764 0.90541 1.25654 0.98944 0.99585 1.02851 1.69839 1.18979 1.20626 1.52737 0.85006 0.78774 0.78446 0.77125 1.18950 1.21570 1.22003 1.21943 0.98445 0.90037 0.90883 1.22547 1.00318 0.93597 0.96219 1.22599 1.01120 0.95116 0.97154 1.22116 1.01663 0.96321 0.95999 1.22108 1.01951 0.96725 0.95240 1.22346 1.02007 0.94197 0.96687 1.23443 0.93663 1.01472 0.99045 0.93034 0.88217 0.93248 0.89117 0.90034 0.89446 0.84213 0.91717 0.88167 0.91441 0.94369 0.96988 0.94958 0.79622 0.93900 0.89715 0.88234 0.91026 0.90347 0.93285 0.91203 0.92407 0.92021 0.90965 0.91229 0.90317 0.89677 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 113.37 1.23 1.46 16 2 O -0.38 -5.99 10.63 -148.98 -1.58 -7.58 16 3 C 0.07 1.16 4.38 31.18 0.14 1.30 16 4 C -0.12 -2.52 7.20 31.12 0.22 -2.29 16 5 C -0.13 -2.68 2.64 -11.01 -0.03 -2.70 16 6 C 0.52 14.25 7.06 87.66 0.62 14.87 16 7 O -0.59 -21.82 15.55 -3.04 -0.05 -21.87 16 8 N -0.60 -14.52 2.45 -821.82 -2.01 -16.54 16 9 C 0.13 3.60 5.39 86.38 0.47 4.06 16 10 C -0.12 -4.17 5.65 30.59 0.17 -4.00 16 11 C 0.16 6.66 6.26 86.38 0.54 7.20 16 12 N -0.75 -40.71 5.60 -343.45 -1.92 -42.63 16 13 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 14 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 15 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 16 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 17 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 21 C 0.11 1.83 4.87 86.38 0.42 2.25 16 22 C -0.11 -1.57 3.06 -9.47 -0.03 -1.60 16 23 C -0.12 -1.76 4.94 31.69 0.16 -1.60 16 24 C -0.12 -1.52 6.80 31.31 0.21 -1.31 16 25 C -0.12 -1.36 6.80 31.32 0.21 -1.15 16 26 C -0.11 -1.32 6.27 31.67 0.20 -1.12 16 27 C -0.14 -2.30 6.51 31.18 0.20 -2.09 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 1.24 7.87 -2.38 -0.02 1.22 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.09 2.11 7.50 -2.39 -0.02 2.09 16 34 H 0.14 2.38 4.23 -2.39 -0.01 2.37 16 35 H 0.06 2.08 7.46 -2.39 -0.02 2.06 16 36 H 0.10 2.32 7.78 -2.39 -0.02 2.30 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.37 21.48 7.67 -92.71 -0.71 20.77 16 42 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 43 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 44 H 0.10 1.39 4.82 -2.38 -0.01 1.38 16 45 H 0.07 1.21 7.85 -2.39 -0.02 1.19 16 46 H 0.08 1.03 5.61 -2.39 -0.01 1.02 16 47 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 49 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 53 H 0.08 0.77 8.05 -2.39 -0.02 0.75 16 54 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 55 H 0.10 1.29 7.41 -2.39 -0.02 1.27 16 Total: -1.00 -74.44 424.95 2.92 -71.52 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.14 Total: 33.39 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 6.04 Total: -4.61 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -3.66 Total: -120.30 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.63 Total: -29.44 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -74.44 2.92 -71.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177345255.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.210 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds