Wall clock time and date at job start Tue Mar 31 2020 22:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00333 * 2 1 4 4 C 1.52999 * 109.47578 * 184.94773 * 3 2 1 5 5 C 1.50701 * 115.54634 * 297.63580 * 4 3 2 6 6 O 1.21283 * 119.99614 * 95.53308 * 5 4 3 7 7 N 1.34776 * 120.00136 * 275.52543 * 5 4 3 8 8 C 1.46498 * 120.00006 * 185.16119 * 7 5 4 9 9 C 1.53009 * 109.47033 * 270.00596 * 8 7 5 10 10 C 1.53001 * 109.46776 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.46824 * 179.97438 * 10 9 8 12 12 C 1.36935 * 119.99776 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00336 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31616 * 120.00135 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47195 * 89.99891 * 16 14 12 18 18 H 1.48504 * 109.47277 * 210.00246 * 16 14 12 19 19 H 1.48502 * 109.46946 * 330.00272 * 16 14 12 20 20 C 1.46496 * 120.00110 * 5.16746 * 7 5 4 21 21 C 1.52998 * 109.47325 * 262.82424 * 20 7 5 22 22 C 1.54269 * 110.02897 * 288.81082 * 21 20 7 23 23 C 1.54958 * 104.16144 * 217.13165 * 22 21 20 24 24 C 1.54896 * 102.77341 * 37.88955 * 23 22 21 25 25 C 1.53869 * 110.03527 * 171.59127 * 21 20 7 26 26 C 1.52999 * 117.51706 * 83.33509 * 4 3 2 27 27 C 1.53001 * 60.00072 * 107.48475 * 26 4 3 28 28 H 1.08992 * 109.47161 * 184.93626 * 1 2 3 29 29 H 1.09006 * 109.47032 * 304.93743 * 1 2 3 30 30 H 1.09001 * 109.47225 * 64.93338 * 1 2 3 31 31 H 1.08999 * 109.46912 * 64.94546 * 3 2 1 32 32 H 1.09003 * 109.47207 * 304.94961 * 3 2 1 33 33 H 1.08997 * 109.47135 * 150.00530 * 8 7 5 34 34 H 1.08997 * 109.47066 * 30.00223 * 8 7 5 35 35 H 1.08997 * 109.46890 * 299.99735 * 9 8 7 36 36 H 1.08997 * 109.47213 * 59.99982 * 9 8 7 37 37 H 1.08997 * 109.46869 * 299.99349 * 10 9 8 38 38 H 1.08997 * 109.47590 * 59.99814 * 10 9 8 39 39 H 0.96995 * 120.00052 * 0.02562 * 11 10 9 40 40 H 0.97000 * 120.00198 * 180.02562 * 15 14 12 41 41 H 1.09007 * 109.46977 * 22.82097 * 20 7 5 42 42 H 1.08998 * 109.47390 * 142.81662 * 20 7 5 43 43 H 1.09005 * 110.01791 * 50.19696 * 21 20 7 44 44 H 1.08996 * 110.48841 * 335.78432 * 22 21 20 45 45 H 1.09003 * 110.48227 * 98.42461 * 22 21 20 46 46 H 1.08999 * 110.72390 * 279.57780 * 23 22 21 47 47 H 1.08998 * 110.92239 * 156.29193 * 23 22 21 48 48 H 1.09005 * 110.48476 * 203.40652 * 24 23 22 49 49 H 1.08997 * 110.59650 * 80.81913 * 24 23 22 50 50 H 1.08996 * 110.03531 * 238.56201 * 25 21 20 51 51 H 1.08999 * 110.03402 * 0.02562 * 25 21 20 52 52 H 1.09001 * 117.49798 * 214.96951 * 26 4 3 53 53 H 1.08996 * 117.49704 * 359.97438 * 26 4 3 54 54 H 1.09002 * 117.49822 * 252.51093 * 27 26 4 55 55 H 1.08999 * 117.52172 * 107.47654 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5306 1.1868 -0.1244 5 6 4.2208 0.4658 1.0047 6 8 4.4754 -0.7157 0.9038 7 7 4.5551 1.1339 2.1264 8 6 5.3255 0.4630 3.1765 9 6 4.3669 -0.2036 4.1654 10 6 5.1715 -0.9037 5.2624 11 7 4.2537 -1.5414 6.2096 12 6 4.7489 -2.2330 7.2828 13 1 5.8160 -2.3079 7.4311 14 6 3.8792 -2.8367 8.1806 15 7 2.5787 -2.7450 8.0001 16 14 4.5546 -3.7795 9.6449 17 1 4.7101 -2.8573 10.7984 18 1 3.6151 -4.8711 10.0070 19 1 5.8757 -4.3597 9.2935 20 6 4.1480 2.5309 2.2958 21 6 5.3038 3.4509 1.8973 22 6 6.4281 3.3734 2.9508 23 6 6.9655 4.8241 3.0391 24 6 5.6781 5.6750 2.9056 25 6 4.8273 4.9136 1.8681 26 6 4.1142 1.0224 -1.5291 27 6 4.2783 2.3480 -0.7829 28 1 -0.3633 -1.0238 0.0884 29 1 -0.3633 0.5886 0.8425 30 1 -0.3634 0.4354 -0.9309 31 1 1.7605 1.8143 0.9310 32 1 1.6203 1.8768 -0.8423 33 1 5.9381 1.1955 3.7019 34 1 5.9688 -0.2939 2.7278 35 1 3.7236 0.5533 4.6141 36 1 3.7542 -0.9361 3.6400 37 1 5.8151 -1.6605 4.8140 38 1 5.7839 -0.1709 5.7878 39 1 3.2953 -1.4744 6.0762 40 1 1.9710 -3.1666 8.6276 41 1 3.2848 2.7371 1.6629 42 1 3.8848 2.7089 3.3384 43 1 5.6888 3.1639 0.9187 44 1 6.0276 3.0558 3.9135 45 1 7.2140 2.6940 2.6207 46 1 7.6525 5.0315 2.2186 47 1 7.4485 5.0025 3.9998 48 1 5.9175 6.6747 2.5428 49 1 5.1552 5.7316 3.8602 50 1 4.9818 5.3369 0.8756 51 1 3.7728 4.9683 2.1382 52 1 4.9974 0.3928 -1.6366 53 1 3.4150 0.9983 -2.3649 54 1 3.6870 3.1963 -1.1278 55 1 5.2692 2.5906 -0.3992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177362403.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:02 Heat of formation + Delta-G solvation = -74.559496 kcal Electronic energy + Delta-G solvation = -31164.933338 eV Core-core repulsion = 27201.882510 eV Total energy + Delta-G solvation = -3963.050828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68676 -39.30112 -38.85319 -37.60453 -37.08804 -36.21815 -34.07171 -31.88519 -30.48032 -29.52947 -29.28297 -27.47420 -26.54881 -25.75250 -25.07803 -23.55825 -23.11553 -22.30875 -21.42716 -20.66206 -19.54530 -19.16079 -18.31197 -17.66009 -17.10119 -16.88120 -16.76044 -16.58569 -16.13551 -16.07215 -15.81992 -15.57131 -15.27843 -15.09764 -14.98665 -14.48988 -14.31797 -14.04842 -13.63768 -13.52842 -13.42345 -13.22362 -13.11658 -12.82164 -12.78351 -12.59708 -12.45468 -12.34289 -12.14857 -12.10198 -11.89638 -11.86498 -11.83408 -11.71538 -11.67150 -11.52842 -11.40260 -11.27005 -10.99101 -10.97582 -10.76045 -10.51354 -9.65044 -9.06257 -7.98405 -5.29105 1.44514 1.47827 1.56335 1.58554 1.93289 2.40545 2.53907 3.05101 3.34665 3.42492 3.66555 3.70630 3.76372 3.83555 3.86972 3.93159 4.00269 4.05943 4.20010 4.25664 4.33956 4.41500 4.43897 4.47431 4.50411 4.52480 4.58716 4.61403 4.67064 4.68260 4.73942 4.76102 4.82007 4.83536 4.85911 4.91917 4.94805 4.97322 5.04047 5.11585 5.18321 5.20236 5.24413 5.26072 5.36041 5.41896 5.44826 5.51274 5.58692 5.68408 6.21177 6.23040 6.43482 7.20492 7.28451 8.02530 8.27271 9.25572 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.003120 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.314327 B = 8971.279615 C =11049.379006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.102 3.898 4 C -0.176 4.176 5 C 0.545 3.455 6 O -0.582 6.582 7 N -0.600 5.600 8 C 0.126 3.874 9 C -0.119 4.119 10 C 0.157 3.843 11 N -0.748 5.748 12 C -0.252 4.252 13 H 0.077 0.923 14 C -0.077 4.077 15 N -0.971 5.971 16 Si 0.980 3.020 17 H -0.281 1.281 18 H -0.294 1.294 19 H -0.269 1.269 20 C 0.110 3.890 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.148 4.148 27 C -0.124 4.124 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.011 0.989 38 H 0.034 0.966 39 H 0.371 0.629 40 H 0.252 0.748 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.081 0.919 53 H 0.120 0.880 54 H 0.142 0.858 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 23.882 -22.003 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C 0.026 3.974 4 C -0.179 4.179 5 C 0.333 3.667 6 O -0.461 6.461 7 N -0.330 5.330 8 C 0.002 3.998 9 C -0.158 4.158 10 C 0.030 3.970 11 N -0.391 5.391 12 C -0.383 4.383 13 H 0.095 0.905 14 C -0.269 4.269 15 N -0.622 5.622 16 Si 0.808 3.192 17 H -0.208 1.208 18 H -0.220 1.220 19 H -0.194 1.194 20 C -0.012 4.012 21 C -0.128 4.128 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.149 4.149 26 C -0.185 4.185 27 C -0.160 4.160 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.203 0.797 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.092 0.908 52 H 0.100 0.900 53 H 0.138 0.862 54 H 0.160 0.840 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.491 23.034 -21.948 31.913 hybrid contribution -0.460 -1.166 1.204 1.738 sum 2.032 21.867 -20.744 30.210 Atomic orbital electron populations 1.22893 0.79454 1.03272 1.01297 1.88005 1.21412 1.28979 1.95600 1.22100 0.88286 0.84786 1.02227 1.21267 0.94834 1.07389 0.94403 1.20154 0.77419 0.85978 0.83110 1.90688 1.55785 1.17851 1.81807 1.47986 1.54574 1.13471 1.16977 1.21383 0.93063 0.97310 0.88002 1.21835 0.98849 0.99096 0.96051 1.20677 0.92486 0.94264 0.89573 1.42596 1.05191 1.63357 1.27951 1.19688 0.92496 1.24748 1.01379 0.90480 1.25670 0.95622 1.02937 1.02681 1.69840 1.02167 1.50657 1.39535 0.85053 0.77314 0.77767 0.79093 1.20793 1.22028 1.19426 1.22094 0.98043 0.78179 1.02898 1.22426 0.94879 0.95594 0.99862 1.22591 0.97814 0.97448 0.98746 1.22500 0.97735 0.94286 1.01625 1.22367 0.95713 0.98894 0.99317 1.22125 1.00088 0.92445 1.00278 1.23053 1.02630 1.00389 0.92471 1.23593 1.01751 0.91713 0.98926 0.90110 0.93300 0.91659 0.92089 0.88872 0.87498 0.92017 0.91681 0.94927 0.97055 0.94777 0.79726 0.93883 0.88419 0.90466 0.89426 0.92209 0.92493 0.91097 0.92092 0.90832 0.92187 0.89848 0.90785 0.90019 0.86181 0.84009 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.42 -11.26 10.59 -148.98 -1.58 -12.84 16 3 C 0.10 1.88 5.53 71.98 0.40 2.27 16 4 C -0.18 -3.55 1.02 -52.93 -0.05 -3.61 16 5 C 0.54 16.38 6.70 87.66 0.59 16.96 16 6 O -0.58 -24.32 16.68 -3.04 -0.05 -24.37 16 7 N -0.60 -15.24 2.47 -821.81 -2.03 -17.26 16 8 C 0.13 3.75 5.16 86.38 0.45 4.20 16 9 C -0.12 -4.51 5.65 30.60 0.17 -4.34 16 10 C 0.16 6.99 6.26 86.38 0.54 7.53 16 11 N -0.75 -41.88 5.60 -343.45 -1.92 -43.80 16 12 C -0.25 -15.02 9.99 84.03 0.84 -14.18 16 13 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 14 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 15 N -0.97 -62.38 13.06 21.65 0.28 -62.10 16 16 Si 0.98 47.97 29.55 68.60 2.03 49.99 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 18 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 C 0.11 1.84 4.17 86.38 0.36 2.20 16 21 C -0.11 -1.34 2.66 -10.07 -0.03 -1.37 16 22 C -0.13 -1.96 4.77 31.69 0.15 -1.80 16 23 C -0.12 -1.54 6.91 31.91 0.22 -1.32 16 24 C -0.13 -1.28 6.83 31.67 0.22 -1.06 16 25 C -0.11 -0.93 6.45 31.32 0.20 -0.73 16 26 C -0.15 -2.53 9.91 30.59 0.30 -2.23 16 27 C -0.12 -1.33 8.26 30.60 0.25 -1.08 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.02 6.80 -2.39 -0.02 1.00 16 32 H 0.09 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.11 2.63 5.23 -2.39 -0.01 2.62 16 34 H 0.06 2.09 7.50 -2.39 -0.02 2.07 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.37 22.14 7.67 -92.71 -0.71 21.43 16 40 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.10 1.30 4.95 -2.38 -0.01 1.29 16 42 H 0.08 1.38 7.89 -2.39 -0.02 1.36 16 43 H 0.09 1.03 4.77 -2.38 -0.01 1.02 16 44 H 0.06 1.06 6.53 -2.39 -0.02 1.05 16 45 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 52 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 53 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 54 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 55 H 0.11 1.21 5.16 -2.39 -0.01 1.19 16 Total: -1.00 -82.07 424.66 3.21 -78.87 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.15 Total: 32.50 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.32 Total: -0.99 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -3.67 Total: -123.17 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.63 Total: -37.21 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 49.99 kcal Total: -82.07 3.21 -78.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177362403.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.309 kcal (2) G-P(sol) polarization free energy of solvation -82.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds