Wall clock time and date at job start Tue Mar 31 2020 22:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00430 * 2 1 4 4 C 1.53004 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.47011 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00467 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99708 * 180.02562 * 5 4 3 8 8 C 1.46925 * 120.63408 * 359.71382 * 7 5 4 9 9 C 1.52762 * 109.00754 * 233.58752 * 8 7 5 10 10 C 1.53037 * 109.38399 * 305.58478 * 9 8 7 11 11 C 1.53004 * 109.45853 * 181.26248 * 10 9 8 12 12 H 1.08997 * 109.48807 * 300.70004 * 11 10 9 13 13 C 1.52571 * 109.48715 * 180.65749 * 11 10 9 14 14 C 1.47095 * 114.32326 * 155.02243 * 13 11 10 15 15 C 1.54862 * 110.32580 * 62.80191 * 14 13 11 16 16 N 1.44583 * 109.60127 * 288.73574 * 15 14 13 17 17 C 1.36942 * 118.64024 * 270.72657 * 16 15 14 18 18 H 1.07992 * 119.99801 * 140.68530 * 17 16 15 19 19 C 1.38811 * 119.99626 * 320.68317 * 17 16 15 20 20 N 1.31618 * 119.99580 * 156.17591 * 19 17 16 21 21 Si 1.86798 * 120.00320 * 336.17620 * 19 17 16 22 22 H 1.48503 * 109.47062 * 95.19022 * 21 19 17 23 23 H 1.48495 * 109.47015 * 215.18950 * 21 19 17 24 24 H 1.48495 * 109.46990 * 335.18914 * 21 19 17 25 25 C 1.47602 * 122.71385 * 90.74090 * 16 15 14 26 26 C 1.50879 * 109.48939 * 60.77374 * 11 10 9 27 27 C 1.53043 * 109.53793 * 61.24511 * 10 9 8 28 28 C 1.46934 * 120.62843 * 179.97438 * 7 5 4 29 29 H 1.09010 * 109.46882 * 300.00456 * 1 2 3 30 30 H 1.09001 * 109.46975 * 59.99607 * 1 2 3 31 31 H 1.09000 * 109.47740 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47097 * 60.00196 * 3 2 1 33 33 H 1.09003 * 109.47073 * 300.00135 * 3 2 1 34 34 H 1.09003 * 109.46929 * 299.99883 * 4 3 2 35 35 H 1.08995 * 109.47102 * 59.99406 * 4 3 2 36 36 H 1.09002 * 109.58595 * 353.41762 * 8 7 5 37 37 H 1.09002 * 109.58856 * 113.84745 * 8 7 5 38 38 H 1.09000 * 109.55980 * 185.55162 * 9 8 7 39 39 H 1.09000 * 109.38846 * 65.51779 * 9 8 7 40 40 H 1.08994 * 109.44852 * 301.22609 * 10 9 8 41 41 H 1.09003 * 108.50760 * 276.27086 * 13 11 10 42 42 H 1.08994 * 108.51808 * 33.92071 * 13 11 10 43 43 H 1.08999 * 109.32565 * 183.05989 * 14 13 11 44 44 H 1.08998 * 109.32619 * 302.53536 * 14 13 11 45 45 H 1.08999 * 109.45083 * 48.76850 * 15 14 13 46 46 H 1.08996 * 109.45474 * 168.71885 * 15 14 13 47 47 H 0.97009 * 120.00169 * 179.97438 * 20 19 17 48 48 H 1.09002 * 108.94509 * 78.54193 * 25 16 15 49 49 H 1.09009 * 108.94512 * 197.25083 * 25 16 15 50 50 H 1.08996 * 109.36673 * 332.03771 * 26 11 10 51 51 H 1.08997 * 109.36799 * 91.65727 * 26 11 10 52 52 H 1.09002 * 109.49727 * 178.68382 * 27 10 9 53 53 H 1.08996 * 109.49622 * 58.58276 * 27 10 9 54 54 H 1.09002 * 109.58070 * 246.14947 * 28 7 5 55 55 H 1.08995 * 109.58697 * 6.43025 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1485 2.5611 0.0000 6 8 3.4358 3.5424 0.0004 7 7 5.4889 2.7019 -0.0009 8 6 6.3655 1.5228 0.0037 9 6 7.3507 1.6399 1.1653 10 6 8.0928 2.9748 1.0694 11 6 9.1025 3.0801 2.2141 12 1 8.5793 3.0114 3.1679 13 6 9.8312 4.4178 2.1286 14 6 10.3696 4.8976 3.4107 15 6 11.4374 3.9130 3.9479 16 7 10.7951 2.6974 4.3951 17 6 10.3687 2.6199 5.6941 18 1 9.4306 2.1380 5.9267 19 6 11.1423 3.1607 6.7119 20 7 10.5801 3.5169 7.8474 21 14 12.9812 3.3831 6.4699 22 1 13.2562 4.7686 6.0118 23 1 13.6827 3.1384 7.7557 24 1 13.4663 2.4189 5.4501 25 6 10.5802 1.5363 3.5094 26 6 10.1043 1.9571 2.1067 27 6 7.0895 4.1263 1.1669 28 6 6.1014 4.0375 -0.0009 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6888 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8575 0.6434 0.8891 35 1 3.8568 0.6436 -0.8908 36 1 5.7649 0.6214 0.1254 37 1 6.9165 1.4733 -0.9355 38 1 8.0682 0.8206 1.1193 39 1 6.8057 1.5935 2.1081 40 1 8.6179 3.0304 0.1159 41 1 10.6557 4.3181 1.4226 42 1 9.1375 5.1661 1.7453 43 1 10.8229 5.8784 3.2672 44 1 9.5585 4.9802 4.1342 45 1 12.1464 3.6779 3.1540 46 1 11.9667 4.3717 4.7830 47 1 11.1208 3.8946 8.5588 48 1 11.5157 0.9849 3.4155 49 1 9.8290 0.8847 3.9560 50 1 9.6396 1.1043 1.6119 51 1 10.9600 2.2909 1.5200 52 1 7.6212 5.0769 1.1219 53 1 6.5465 4.0568 2.1094 54 1 6.6304 4.1968 -0.9405 55 1 5.3262 4.7949 0.1149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186570301.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:08 Heat of formation + Delta-G solvation = -89.059964 kcal Electronic energy + Delta-G solvation = -31025.221677 eV Core-core repulsion = 27061.542061 eV Total energy + Delta-G solvation = -3963.679615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.46290 -40.23056 -38.84395 -38.20339 -36.02213 -34.07547 -33.63560 -33.23013 -31.86958 -31.71038 -28.37222 -27.50870 -26.75630 -25.65061 -24.73592 -24.26221 -23.44590 -21.67718 -21.27805 -20.49515 -19.84746 -18.60252 -18.46438 -17.50769 -17.36341 -17.19675 -16.56190 -16.42633 -16.16521 -15.81900 -15.65996 -15.35405 -15.15890 -14.95463 -14.87480 -14.62681 -14.40067 -14.28004 -14.12724 -13.71357 -13.67154 -13.53066 -13.18152 -12.87683 -12.80408 -12.72232 -12.44194 -12.40129 -12.29663 -12.18576 -12.08747 -11.98639 -11.76071 -11.62389 -11.47812 -11.34805 -11.16513 -10.99603 -10.82713 -10.71431 -10.69860 -10.52321 -9.64368 -8.63513 -8.19794 -5.54751 1.29758 1.39513 1.51211 1.53871 1.89155 2.42628 2.82590 3.06084 3.45592 3.58211 3.73877 3.82351 3.86715 3.99322 4.04363 4.08357 4.19371 4.26121 4.37903 4.38589 4.42268 4.48106 4.50267 4.51044 4.53331 4.59889 4.63418 4.75487 4.76732 4.78601 4.81307 4.84347 4.85195 4.87459 4.92650 4.98016 5.05153 5.08606 5.15694 5.18096 5.25197 5.32167 5.39429 5.45089 5.51143 5.59632 5.61643 5.70330 5.84692 6.00097 6.11628 6.19290 6.37513 7.09034 7.09653 7.74030 8.08918 9.00630 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.002392 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.383325 B =11700.694887 C =12261.081577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.078 3.922 4 C -0.132 4.132 5 C 0.514 3.486 6 O -0.591 6.591 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.070 4.070 11 C -0.065 4.065 12 H 0.037 0.963 13 C -0.102 4.102 14 C -0.133 4.133 15 C 0.141 3.859 16 N -0.610 5.610 17 C -0.253 4.253 18 H 0.033 0.967 19 C -0.022 4.022 20 N -0.950 5.950 21 Si 0.944 3.056 22 H -0.276 1.276 23 H -0.310 1.310 24 H -0.261 1.261 25 C 0.142 3.858 26 C -0.119 4.119 27 C -0.127 4.127 28 C 0.115 3.885 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.027 0.973 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.261 0.739 48 H 0.019 0.981 49 H 0.040 0.960 50 H 0.094 0.906 51 H 0.067 0.933 52 H 0.085 0.915 53 H 0.036 0.964 54 H 0.090 0.910 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 -5.758 -24.133 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.001 3.999 4 C -0.172 4.172 5 C 0.304 3.696 6 O -0.472 6.472 7 N -0.340 5.340 8 C -0.016 4.016 9 C -0.170 4.170 10 C -0.089 4.089 11 C -0.084 4.084 12 H 0.055 0.945 13 C -0.139 4.139 14 C -0.173 4.173 15 C 0.015 3.985 16 N -0.334 5.334 17 C -0.384 4.384 18 H 0.051 0.949 19 C -0.218 4.218 20 N -0.595 5.595 21 Si 0.773 3.227 22 H -0.203 1.203 23 H -0.239 1.239 24 H -0.185 1.185 25 C 0.018 3.982 26 C -0.157 4.157 27 C -0.165 4.165 28 C -0.008 4.008 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.037 0.963 49 H 0.059 0.941 50 H 0.112 0.888 51 H 0.085 0.915 52 H 0.103 0.897 53 H 0.055 0.945 54 H 0.108 0.892 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.762 -5.393 -24.033 26.879 hybrid contribution 0.500 0.759 1.368 1.642 sum -10.262 -4.634 -22.665 25.308 Atomic orbital electron populations 1.22944 0.79276 1.04089 1.00736 1.87768 1.21610 1.27842 1.95619 1.22098 0.92730 0.84191 1.00892 1.21485 0.94532 0.93928 1.07214 1.20855 0.82226 0.91544 0.75010 1.90679 1.61585 1.42424 1.52545 1.48258 1.05229 1.08574 1.71893 1.21972 0.92569 0.87245 0.99785 1.21994 0.98500 0.98460 0.98090 1.21126 0.94539 0.94156 0.99049 1.20458 0.95573 0.94776 0.97549 0.94481 1.20473 0.99869 0.97225 0.96312 1.21245 0.99359 0.98640 0.98078 1.21161 0.93962 0.86965 0.96387 1.43958 1.70211 1.11751 1.07517 1.18658 1.00625 1.35637 0.83450 0.94948 1.26102 1.01683 0.99138 0.94907 1.70034 1.36769 1.44889 1.07785 0.85845 0.82698 0.78211 0.75935 1.20346 1.23860 1.18508 1.21403 0.97573 0.88177 0.91017 1.21923 0.98795 0.99261 0.95761 1.22015 0.96868 1.00241 0.97345 1.21613 0.95955 0.84009 0.99189 0.93735 0.93171 0.87811 0.93835 0.92841 0.86840 0.85533 0.87671 0.88489 0.88257 0.93730 0.88840 0.91393 0.91538 0.91987 0.95411 0.92234 0.96010 0.93007 0.96260 0.94140 0.88783 0.91468 0.89706 0.94481 0.89216 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.55 10.70 -148.98 -1.59 -9.15 16 3 C 0.08 1.46 5.23 71.98 0.38 1.84 16 4 C -0.13 -2.09 4.42 29.85 0.13 -1.95 16 5 C 0.51 11.29 7.70 87.65 0.67 11.97 16 6 O -0.59 -17.88 15.39 -3.03 -0.05 -17.93 16 7 N -0.61 -11.19 2.98 -819.64 -2.44 -13.63 16 8 C 0.11 1.29 6.31 86.22 0.54 1.83 16 9 C -0.13 -2.21 5.12 30.53 0.16 -2.05 16 10 C -0.07 -1.34 1.71 -10.77 -0.02 -1.36 16 11 C -0.06 -1.74 1.40 -11.62 -0.02 -1.76 16 12 H 0.04 1.37 7.48 -2.39 -0.02 1.35 16 13 C -0.10 -2.79 4.57 28.62 0.13 -2.66 16 14 C -0.13 -4.84 5.74 29.39 0.17 -4.67 16 15 C 0.14 5.86 4.51 87.37 0.39 6.25 16 16 N -0.61 -27.95 1.82 -698.30 -1.27 -29.23 16 17 C -0.25 -14.40 9.68 84.03 0.81 -13.59 16 18 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 19 C -0.02 -1.31 5.23 84.86 0.44 -0.87 16 20 N -0.95 -60.38 13.97 21.65 0.30 -60.08 16 21 Si 0.94 46.94 25.23 68.60 1.73 48.67 16 22 H -0.28 -13.13 6.67 99.48 0.66 -12.47 16 23 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 25 C 0.14 5.21 6.25 86.50 0.54 5.75 16 26 C -0.12 -3.06 5.11 30.24 0.15 -2.90 16 27 C -0.13 -2.70 5.10 30.69 0.16 -2.55 16 28 C 0.11 2.22 6.44 86.38 0.56 2.78 16 29 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.11 1.59 7.68 -2.39 -0.02 1.57 16 35 H 0.13 1.37 7.95 -2.39 -0.02 1.35 16 36 H 0.11 0.91 5.94 -2.39 -0.01 0.89 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.36 5.98 -2.39 -0.01 1.35 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.61 7.36 -2.39 -0.02 1.59 16 42 H 0.07 1.62 5.41 -2.39 -0.01 1.61 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 2.14 8.07 -2.39 -0.02 2.13 16 46 H 0.02 1.03 3.39 -2.39 -0.01 1.02 16 47 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.04 1.56 7.89 -2.38 -0.02 1.54 16 50 H 0.09 1.83 5.51 -2.39 -0.01 1.81 16 51 H 0.07 1.57 7.32 -2.39 -0.02 1.55 16 52 H 0.08 1.73 5.91 -2.39 -0.01 1.72 16 53 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 55 H 0.07 1.66 7.00 -2.39 -0.02 1.64 16 Total: -1.00 -75.41 401.50 3.94 -71.46 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.81 Total: 12.25 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 6.45 Total: -2.37 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -3.41 Total: -102.94 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.64 Total: -27.08 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.73 Total: 48.67 kcal Total: -75.41 3.94 -71.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186570301.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.596 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds