Wall clock time and date at job start Tue Mar 31 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00170 * 2 1 4 4 C 1.52999 * 109.47280 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47300 * 54.72623 * 4 3 2 6 6 O 1.21280 * 119.99805 * 234.26804 * 5 4 3 7 7 N 1.34779 * 119.99786 * 54.25949 * 5 4 3 8 8 C 1.46918 * 120.63356 * 4.61047 * 7 5 4 9 9 C 1.53631 * 108.54406 * 126.36368 * 8 7 5 10 10 C 1.53043 * 109.23955 * 54.85788 * 9 8 7 11 11 C 1.53001 * 109.45618 * 178.49075 * 10 9 8 12 12 N 1.46497 * 109.47114 * 295.06669 * 11 10 9 13 13 C 1.36933 * 119.99975 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00083 * 359.97438 * 13 12 11 15 15 C 1.38818 * 120.00318 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00178 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99724 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46923 * 90.00021 * 17 15 13 19 19 H 1.48498 * 109.46771 * 210.00301 * 17 15 13 20 20 H 1.48508 * 109.46857 * 330.00175 * 17 15 13 21 21 C 1.53039 * 109.53592 * 298.50777 * 10 9 8 22 22 C 1.46924 * 120.62698 * 184.88254 * 7 5 4 23 23 C 1.52998 * 109.47012 * 294.72456 * 4 3 2 24 24 C 1.52996 * 109.47213 * 180.02562 * 23 4 3 25 25 C 1.53006 * 109.47318 * 59.99540 * 24 23 4 26 26 C 1.53001 * 109.47069 * 300.00595 * 25 24 23 27 27 C 1.52999 * 109.47335 * 59.99846 * 26 25 24 28 28 H 1.08995 * 109.47374 * 59.99847 * 1 2 3 29 29 H 1.08999 * 109.46734 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46756 * 299.99645 * 1 2 3 31 31 H 1.09003 * 109.46854 * 59.99968 * 3 2 1 32 32 H 1.09002 * 109.46731 * 300.00531 * 3 2 1 33 33 H 1.09000 * 109.58715 * 246.20013 * 8 7 5 34 34 H 1.08997 * 109.58871 * 6.62166 * 8 7 5 35 35 H 1.08995 * 109.63228 * 294.86298 * 9 8 7 36 36 H 1.09006 * 109.42696 * 174.72357 * 9 8 7 37 37 H 1.08993 * 109.45848 * 58.53074 * 10 9 8 38 38 H 1.08996 * 109.47235 * 55.06843 * 11 10 9 39 39 H 1.09003 * 109.46923 * 175.06585 * 11 10 9 40 40 H 0.97001 * 119.99848 * 0.02562 * 12 11 10 41 41 H 0.96995 * 119.99628 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.50250 * 301.41955 * 21 10 9 43 43 H 1.08999 * 109.49767 * 181.31791 * 21 10 9 44 44 H 1.09007 * 109.59187 * 353.38144 * 22 7 5 45 45 H 1.08997 * 109.58491 * 113.80149 * 22 7 5 46 46 H 1.09000 * 109.46801 * 299.99956 * 23 4 3 47 47 H 1.08992 * 109.47405 * 59.99882 * 23 4 3 48 48 H 1.08999 * 109.46862 * 300.00105 * 24 23 4 49 49 H 1.08999 * 109.47487 * 179.97438 * 24 23 4 50 50 H 1.09000 * 109.47011 * 179.97438 * 25 24 23 51 51 H 1.08999 * 109.46693 * 60.00462 * 25 24 23 52 52 H 1.09000 * 109.46763 * 299.99716 * 26 25 24 53 53 H 1.09001 * 109.46551 * 179.97438 * 26 25 24 54 54 H 1.08996 * 109.46832 * 179.97438 * 27 26 25 55 55 H 1.08999 * 109.47213 * 59.99652 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9710 0.3273 -1.1609 6 8 4.6774 -0.6397 -0.9688 7 7 3.5754 0.6350 -2.4120 8 6 2.8042 1.8578 -2.6739 9 6 3.5192 2.6608 -3.7711 10 6 3.7196 1.7695 -4.9990 11 6 4.3977 2.5756 -6.1087 12 7 3.5033 3.6490 -6.5488 13 6 3.8985 4.5058 -7.5412 14 1 4.8698 4.3905 -7.9991 15 6 3.0512 5.5234 -7.9580 16 7 3.4313 6.3472 -8.9115 17 14 1.3714 5.7234 -7.1655 18 1 1.4811 6.6314 -5.9956 19 1 0.4239 6.3001 -8.1528 20 1 0.8742 4.3975 -6.7181 21 6 4.6000 0.5747 -4.6259 22 6 3.9021 -0.2491 -3.5391 23 6 3.9967 0.5427 1.3093 24 6 5.5220 0.4224 1.3090 25 6 6.1433 1.8144 1.1765 26 6 5.6820 2.4563 -0.1334 27 6 4.1567 2.5766 -0.1330 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 1.8006 1.5926 -3.0064 34 1 2.7440 2.4538 -1.7633 35 1 4.4885 2.9989 -3.4048 36 1 2.9114 3.5238 -4.0432 37 1 2.7516 1.4119 -5.3499 38 1 5.3243 3.0070 -5.7300 39 1 4.6198 1.9196 -6.9504 40 1 2.6310 3.7529 -6.1373 41 1 2.8391 7.0579 -9.2029 42 1 5.5592 0.9323 -4.2515 43 1 4.7616 -0.0472 -5.5064 44 1 4.5665 -1.0438 -3.1997 45 1 2.9862 -0.6826 -3.9408 46 1 3.6817 1.1629 2.1485 47 1 3.5538 -0.4487 1.4038 48 1 5.8373 -0.1975 0.4697 49 1 5.8507 -0.0345 2.2424 50 1 7.2300 1.7287 1.1768 51 1 5.8280 2.4343 2.0158 52 1 5.9973 1.8363 -0.9726 53 1 6.1243 3.4481 -0.2275 54 1 3.8282 3.0343 -1.0660 55 1 3.8414 3.1965 0.7062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205431298.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:35 Heat of formation + Delta-G solvation = -88.073966 kcal Electronic energy + Delta-G solvation = -32476.568759 eV Core-core repulsion = 28512.931899 eV Total energy + Delta-G solvation = -3963.636859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32824 -39.59794 -38.64564 -37.84375 -36.71900 -34.70500 -33.52841 -32.47963 -32.01368 -31.39705 -28.55400 -28.02109 -26.15656 -25.68193 -24.52574 -23.88487 -23.46183 -22.48172 -21.73286 -21.07563 -19.93983 -19.43020 -17.77766 -17.42156 -16.85766 -16.77900 -16.59149 -16.47687 -16.15641 -15.98758 -15.52867 -15.35930 -15.03894 -14.91886 -14.85267 -14.70010 -14.46894 -14.20580 -13.92749 -13.73207 -13.59224 -13.25481 -13.18299 -12.95089 -12.89386 -12.80278 -12.76640 -12.68750 -12.24027 -12.19693 -12.15226 -11.95314 -11.87112 -11.72445 -11.64909 -11.42179 -11.39367 -11.07292 -10.96620 -10.90912 -10.53056 -10.21118 -9.56282 -9.28352 -8.01349 -5.35306 1.38332 1.43983 1.51447 1.71385 2.03660 2.50504 2.74319 3.29872 3.33447 3.55951 3.68459 3.71105 3.74813 3.85846 3.94723 4.08527 4.10422 4.13925 4.26021 4.30421 4.32821 4.34991 4.46573 4.50736 4.53353 4.54595 4.58920 4.59716 4.62101 4.63645 4.72473 4.83163 4.84854 4.87556 4.89842 4.91856 4.96894 5.05646 5.07995 5.12298 5.13693 5.22319 5.26154 5.28029 5.35524 5.42853 5.49009 5.58749 5.69494 5.76676 6.20283 6.22350 6.49146 7.09566 7.26866 7.84747 8.06279 9.20541 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003210 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.996038 B = 8719.440744 C = 9122.976347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.052 3.948 4 C -0.071 4.071 5 C 0.536 3.464 6 O -0.573 6.573 7 N -0.605 5.605 8 C 0.089 3.911 9 C -0.125 4.125 10 C -0.086 4.086 11 C 0.161 3.839 12 N -0.753 5.753 13 C -0.238 4.238 14 H 0.050 0.950 15 C -0.067 4.067 16 N -0.987 5.987 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.298 1.298 20 H -0.247 1.247 21 C -0.115 4.115 22 C 0.117 3.883 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.035 0.965 53 H 0.078 0.922 54 H 0.086 0.914 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 -11.525 25.846 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.025 4.025 4 C -0.074 4.074 5 C 0.326 3.674 6 O -0.453 6.453 7 N -0.337 5.337 8 C -0.033 4.033 9 C -0.163 4.163 10 C -0.105 4.105 11 C 0.035 3.965 12 N -0.399 5.399 13 C -0.369 4.369 14 H 0.068 0.932 15 C -0.258 4.258 16 N -0.637 5.637 17 Si 0.784 3.216 18 H -0.197 1.197 19 H -0.225 1.225 20 H -0.171 1.171 21 C -0.154 4.154 22 C -0.006 4.006 23 C -0.120 4.120 24 C -0.174 4.174 25 C -0.151 4.151 26 C -0.157 4.157 27 C -0.156 4.156 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.096 0.904 52 H 0.054 0.946 53 H 0.097 0.903 54 H 0.104 0.896 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.420 -12.145 25.787 28.845 hybrid contribution -0.733 0.483 -0.561 1.041 sum -5.153 -11.662 25.226 28.265 Atomic orbital electron populations 1.22879 0.79498 1.03434 1.01049 1.87913 1.21306 1.28139 1.95611 1.23126 0.90590 0.85527 1.03209 1.20902 0.95296 0.96809 0.94389 1.20665 0.78166 0.84616 0.83921 1.90548 1.39006 1.31186 1.84543 1.48076 1.54837 1.24051 1.06737 1.22649 0.94820 0.85394 1.00405 1.22006 1.01546 0.98130 0.94651 1.21226 0.99521 0.95206 0.94513 1.20776 0.92588 0.88571 0.94595 1.42653 1.18089 1.35129 1.44075 1.19030 1.00513 1.06505 1.10807 0.93188 1.25590 1.03006 0.97674 0.99521 1.69905 1.38891 1.21112 1.33838 0.85369 0.79378 0.78957 0.77883 1.19690 1.22522 1.17100 1.21791 0.98410 0.96456 0.98700 1.21525 1.00355 0.92712 0.85988 1.21253 0.95938 1.00308 0.94516 1.21820 0.95359 0.97870 1.02396 1.21516 0.99924 0.96087 0.97595 1.21507 0.95390 1.01122 0.97721 1.21945 0.95658 0.93186 1.04823 0.93298 0.89434 0.92518 0.89995 0.90480 0.90248 0.86048 0.91702 0.90748 0.90546 0.96365 0.96271 0.79796 0.93336 0.92301 0.89810 0.90367 0.90619 0.89576 0.93079 0.91586 0.91996 0.92379 0.90351 0.94577 0.90337 0.89571 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.86 9.72 -148.98 -1.45 -9.31 16 3 C 0.05 0.76 4.41 71.98 0.32 1.08 16 4 C -0.07 -1.28 0.34 -52.93 -0.02 -1.30 16 5 C 0.54 13.32 4.56 87.66 0.40 13.72 16 6 O -0.57 -18.32 12.89 -3.03 -0.04 -18.36 16 7 N -0.60 -13.59 2.96 -818.07 -2.42 -16.01 16 8 C 0.09 1.65 4.11 86.51 0.36 2.01 16 9 C -0.13 -2.96 5.15 30.82 0.16 -2.80 16 10 C -0.09 -2.30 2.19 -10.77 -0.02 -2.33 16 11 C 0.16 5.93 5.65 86.38 0.49 6.41 16 12 N -0.75 -33.99 5.12 -343.45 -1.76 -35.75 16 13 C -0.24 -13.50 10.47 84.04 0.88 -12.62 16 14 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 15 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 16 N -0.99 -63.09 13.97 21.65 0.30 -62.79 16 17 Si 0.96 43.63 27.74 68.60 1.90 45.53 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.25 -9.87 6.52 99.48 0.65 -9.22 16 21 C -0.11 -2.73 5.36 30.67 0.16 -2.56 16 22 C 0.12 2.69 6.44 86.36 0.56 3.25 16 23 C -0.08 -1.55 4.30 30.59 0.13 -1.42 16 24 C -0.14 -2.81 5.63 30.60 0.17 -2.64 16 25 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 26 C -0.12 -2.14 5.70 30.59 0.17 -1.96 16 27 C -0.12 -1.74 4.45 30.60 0.14 -1.61 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.97 4.62 -2.39 -0.01 0.96 16 33 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.12 1.78 2.38 -2.39 -0.01 1.77 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.88 7.15 -2.38 -0.02 1.86 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.37 15.35 4.70 -92.71 -0.44 14.91 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.02 7.00 -2.38 -0.02 2.01 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.19 7.83 -2.39 -0.02 1.17 16 48 H 0.07 1.82 5.31 -2.39 -0.01 1.81 16 49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.04 0.84 7.22 -2.39 -0.02 0.83 16 53 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.09 1.23 4.85 -2.39 -0.01 1.22 16 55 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -74.15 398.25 2.70 -71.45 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.37 Total: 31.56 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.79 Total: -6.33 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.88 Total: -114.54 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.49 Total: -27.67 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.90 Total: 45.53 kcal Total: -74.15 2.70 -71.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205431298.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.626 kcal (2) G-P(sol) polarization free energy of solvation -74.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds