Wall clock time and date at job start Tue Mar 31 2020 22:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00101 * 2 1 4 4 H 1.09000 * 109.47386 * 330.00215 * 3 2 1 5 5 C 1.53004 * 109.46839 * 89.99980 * 3 2 1 6 6 C 1.53006 * 109.47123 * 60.00000 * 5 3 2 7 7 C 1.52996 * 109.46976 * 59.99942 * 6 5 3 8 8 C 1.53004 * 109.47242 * 299.99985 * 7 6 5 9 9 H 1.08998 * 109.47243 * 299.99795 * 8 7 6 10 10 C 1.53004 * 109.47137 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47208 * 64.99916 * 10 8 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 8 14 14 C 1.46921 * 120.63392 * 359.43977 * 13 11 10 15 15 C 1.52760 * 109.00994 * 233.58899 * 14 13 11 16 16 C 1.53036 * 109.38235 * 305.58739 * 15 14 13 17 17 C 1.53001 * 109.45699 * 181.26235 * 16 15 14 18 18 N 1.46494 * 109.47318 * 64.93522 * 17 16 15 19 19 C 1.36935 * 120.00238 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99937 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00352 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99714 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47033 * 90.00347 * 23 21 19 25 25 H 1.48502 * 109.47005 * 210.00104 * 23 21 19 26 26 H 1.48494 * 109.47274 * 329.99980 * 23 21 19 27 27 C 1.53035 * 109.53955 * 61.24292 * 16 15 14 28 28 C 1.46924 * 120.62813 * 179.72946 * 13 11 10 29 29 C 1.52998 * 109.47234 * 60.00272 * 8 7 6 30 30 H 1.08995 * 109.47125 * 300.00096 * 1 2 3 31 31 H 1.09001 * 109.46973 * 59.99837 * 1 2 3 32 32 H 1.08994 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47118 * 300.00544 * 5 3 2 34 34 H 1.08997 * 109.47262 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.46851 * 300.00006 * 6 5 3 36 36 H 1.08991 * 109.47327 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47036 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47278 * 60.00325 * 7 6 5 39 39 H 1.09009 * 109.46730 * 304.99822 * 10 8 7 40 40 H 1.08998 * 109.46846 * 185.00367 * 10 8 7 41 41 H 1.09004 * 109.58490 * 353.42409 * 14 13 11 42 42 H 1.09002 * 109.58518 * 113.84767 * 14 13 11 43 43 H 1.09005 * 109.56000 * 185.55371 * 15 14 13 44 44 H 1.08994 * 109.38732 * 65.51586 * 15 14 13 45 45 H 1.09002 * 109.46377 * 301.22063 * 16 15 14 46 46 H 1.09001 * 109.46937 * 184.93240 * 17 16 15 47 47 H 1.08999 * 109.47247 * 304.92999 * 17 16 15 48 48 H 0.97003 * 120.00348 * 359.97438 * 18 17 16 49 49 H 0.96997 * 120.00521 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.50277 * 178.68099 * 27 16 15 51 51 H 1.08998 * 109.52797 * 58.59747 * 27 16 15 52 52 H 1.09006 * 109.58353 * 246.15683 * 28 13 11 53 53 H 1.09008 * 109.58903 * 6.57099 * 28 13 11 54 54 H 1.09005 * 109.47209 * 59.99320 * 29 8 7 55 55 H 1.08991 * 109.47437 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.1514 0.7972 2.1638 7 6 4.5001 0.7550 1.4426 8 6 4.2927 0.2892 0.0000 9 1 3.8494 -0.7066 -0.0001 10 6 5.6415 0.2464 -0.7210 11 6 6.5178 -0.8021 -0.0856 12 8 6.1044 -1.4509 0.8520 13 7 7.7631 -1.0145 -0.5553 14 6 8.2758 -0.2404 -1.6940 15 6 8.7798 -1.2057 -2.7653 16 6 9.7997 -2.1642 -2.1461 17 6 10.3290 -3.1115 -3.2247 18 7 11.0741 -2.3441 -4.2258 19 6 11.6447 -2.9839 -5.2936 20 1 11.5458 -4.0544 -5.3975 21 6 12.3503 -2.2568 -6.2424 22 7 12.8983 -2.8717 -7.2690 23 14 12.5208 -0.4052 -6.0629 24 1 13.7426 -0.0944 -5.2783 25 1 12.6254 0.2150 -7.4082 26 1 11.3300 0.1358 -5.3598 27 6 9.1294 -2.9781 -1.0370 28 6 8.6313 -2.0290 0.0575 29 6 3.3589 1.2632 -0.7212 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.2568 1.8013 1.9564 34 1 2.6614 2.7668 1.4426 35 1 2.7081 -0.1985 2.1637 36 1 3.2989 1.1288 3.1916 37 1 5.1652 0.0607 1.9561 38 1 4.9435 1.7507 1.4427 39 1 6.1256 1.2200 -0.6441 40 1 5.4843 0.0008 -1.7713 41 1 7.4769 0.3760 -2.1061 42 1 9.0972 0.3953 -1.3633 43 1 9.2517 -0.6429 -3.5707 44 1 7.9400 -1.7754 -3.1630 45 1 10.6277 -1.5924 -1.7272 46 1 10.9883 -3.8497 -2.7682 47 1 9.4924 -3.6192 -3.7048 48 1 11.1633 -1.3827 -4.1323 49 1 13.3917 -2.3636 -7.9318 50 1 9.8500 -3.6769 -0.6123 51 1 8.2860 -3.5315 -1.4500 52 1 9.4822 -1.5421 0.5340 53 1 8.0669 -2.5924 0.8007 54 1 3.8023 2.2590 -0.7211 55 1 3.2115 0.9317 -1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205440512.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:18 Heat of formation + Delta-G solvation = -116.241058 kcal Electronic energy + Delta-G solvation = -30446.036298 eV Core-core repulsion = 26481.178022 eV Total energy + Delta-G solvation = -3964.858276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44579 -40.23055 -38.96900 -37.11294 -36.59287 -34.51936 -33.52421 -32.65171 -31.97960 -31.11982 -28.97538 -27.74485 -27.28094 -25.18658 -24.30140 -23.46114 -23.32880 -22.38489 -21.39803 -20.52968 -19.91752 -19.53986 -18.08400 -17.09410 -16.95383 -16.65234 -16.54911 -16.51990 -16.13019 -15.93631 -15.64452 -15.49600 -15.08044 -14.92159 -14.71957 -14.48927 -14.29196 -14.07880 -13.94647 -13.71899 -13.43456 -13.28979 -13.27257 -13.11637 -12.88927 -12.79052 -12.67364 -12.54719 -12.16419 -12.15093 -12.13524 -11.87745 -11.86975 -11.66071 -11.53792 -11.41121 -11.37627 -11.18675 -11.09830 -10.94526 -10.46686 -10.32698 -9.59057 -9.28456 -8.01406 -5.35494 1.38557 1.44578 1.51905 1.69684 2.07374 2.50592 2.96402 3.29572 3.53853 3.57295 3.71354 3.81545 3.84449 3.89224 3.97424 4.10779 4.17983 4.21256 4.30109 4.35912 4.39935 4.44523 4.48474 4.55137 4.56847 4.58389 4.62770 4.69569 4.73021 4.76585 4.81363 4.84743 4.86082 4.87030 4.89533 4.95258 5.00510 5.05129 5.07866 5.10585 5.14316 5.26460 5.31674 5.35344 5.40334 5.49606 5.52077 5.63354 5.66940 5.76319 6.22119 6.39484 6.48149 7.09401 7.25289 7.84617 8.06297 9.20280 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002117 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.987608 B =13223.575429 C =13768.702169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.083 3.917 4 H 0.076 0.924 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.061 4.061 9 H 0.050 0.950 10 C -0.134 4.134 11 C 0.509 3.491 12 O -0.579 6.579 13 N -0.612 5.612 14 C 0.110 3.890 15 C -0.127 4.127 16 C -0.087 4.087 17 C 0.159 3.841 18 N -0.753 5.753 19 C -0.238 4.238 20 H 0.049 0.951 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.960 3.040 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.241 1.241 27 C -0.117 4.117 28 C 0.115 3.885 29 C -0.109 4.109 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.020 0.980 47 H 0.015 0.985 48 H 0.369 0.631 49 H 0.258 0.742 50 H 0.084 0.916 51 H 0.056 0.944 52 H 0.080 0.920 53 H 0.078 0.922 54 H 0.098 0.902 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.779 15.587 19.622 34.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.026 3.974 4 H 0.094 0.906 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.080 4.080 9 H 0.068 0.932 10 C -0.173 4.173 11 C 0.300 3.700 12 O -0.459 6.459 13 N -0.345 5.345 14 C -0.012 4.012 15 C -0.165 4.165 16 C -0.106 4.106 17 C 0.033 3.967 18 N -0.400 5.400 19 C -0.369 4.369 20 H 0.067 0.933 21 C -0.260 4.260 22 N -0.637 5.637 23 Si 0.786 3.214 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.165 1.165 27 C -0.155 4.155 28 C -0.008 4.008 29 C -0.146 4.146 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.039 0.961 47 H 0.034 0.966 48 H 0.203 0.797 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.075 0.925 52 H 0.098 0.902 53 H 0.097 0.903 54 H 0.117 0.883 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.845 14.895 19.999 34.502 hybrid contribution 0.394 0.235 -0.518 0.692 sum -23.451 15.130 19.481 34.035 Atomic orbital electron populations 1.22884 0.80517 1.03109 1.00550 1.87955 1.20472 1.28944 1.95142 1.22268 0.95003 0.84347 0.95773 0.90626 1.22021 0.99868 0.99682 0.95823 1.21337 0.95507 0.99256 0.98673 1.21624 0.97231 1.00963 0.95335 1.20706 0.93136 0.99376 0.94753 0.93161 1.21862 0.95285 0.98811 1.01353 1.21271 0.81522 0.84292 0.82945 1.90643 1.73613 1.51144 1.30538 1.48296 1.14161 1.38519 1.33491 1.21842 1.00917 0.93266 0.85171 1.21835 0.98618 0.97979 0.98075 1.21246 0.98013 0.96548 0.94770 1.20796 0.93228 0.93748 0.88917 1.42652 1.64682 1.06176 1.26441 1.19025 1.25196 0.92652 0.99989 0.93250 1.25622 1.00281 1.03423 0.96695 1.69905 1.41674 1.37035 1.15083 0.85339 0.79205 0.79899 0.76930 1.20444 1.22392 1.16466 1.21802 1.00355 0.97854 0.95534 1.21541 0.93959 0.89977 0.95273 1.21730 0.93385 1.00616 0.98900 0.93500 0.93100 0.89712 0.91800 0.89501 0.93809 0.92120 0.92869 0.91236 0.86310 0.87541 0.87154 0.89644 0.90941 0.92288 0.90194 0.96146 0.96649 0.79744 0.93352 0.89777 0.92545 0.90177 0.90335 0.88323 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -7.39 9.00 -148.98 -1.34 -8.73 16 3 C 0.08 1.10 2.92 30.60 0.09 1.19 16 4 H 0.08 0.73 7.79 -2.39 -0.02 0.71 16 5 C -0.14 -1.69 5.63 30.60 0.17 -1.51 16 6 C -0.11 -1.89 5.78 30.60 0.18 -1.71 16 7 C -0.11 -2.08 4.95 30.59 0.15 -1.92 16 8 C -0.06 -1.07 1.69 -10.79 -0.02 -1.09 16 9 H 0.05 1.27 7.49 -2.39 -0.02 1.25 16 10 C -0.13 -2.06 3.52 29.85 0.11 -1.95 16 11 C 0.51 11.64 7.42 87.66 0.65 12.29 16 12 O -0.58 -17.70 13.38 -3.04 -0.04 -17.74 16 13 N -0.61 -12.71 2.98 -819.72 -2.44 -15.16 16 14 C 0.11 1.87 6.31 86.22 0.54 2.42 16 15 C -0.13 -3.01 5.23 30.53 0.16 -2.85 16 16 C -0.09 -2.32 2.19 -10.77 -0.02 -2.34 16 17 C 0.16 5.92 5.65 86.38 0.49 6.41 16 18 N -0.75 -34.26 5.12 -343.46 -1.76 -36.02 16 19 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 20 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.99 -63.42 13.97 21.65 0.30 -63.12 16 23 Si 0.96 44.02 27.73 68.60 1.90 45.92 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.24 -9.47 6.52 99.48 0.65 -8.82 16 27 C -0.12 -2.73 5.36 30.67 0.16 -2.56 16 28 C 0.12 2.49 6.43 86.36 0.56 3.05 16 29 C -0.11 -1.36 4.95 30.59 0.15 -1.21 16 30 H 0.05 0.47 7.87 -2.39 -0.02 0.45 16 31 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.73 7.87 -2.39 -0.02 0.72 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.04 0.96 7.68 -2.39 -0.02 0.94 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.30 5.95 -2.39 -0.01 1.28 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 1.19 7.95 -2.38 -0.02 1.17 16 40 H 0.11 1.39 7.68 -2.39 -0.02 1.37 16 41 H 0.11 1.32 5.94 -2.38 -0.01 1.30 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.89 7.15 -2.38 -0.02 1.87 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.37 15.45 4.71 -92.71 -0.44 15.01 16 49 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 53 H 0.08 1.93 7.01 -2.38 -0.02 1.91 16 54 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 55 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.46 411.25 2.91 -72.55 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.35 Total: 28.87 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.94 Total: -6.58 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.90 Total: -114.30 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.38 Total: -26.47 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Total: -75.46 2.91 -72.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205440512.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.688 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds