Wall clock time and date at job start Tue Mar 31 2020 22:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00002 * 2 1 4 4 C 1.53003 * 109.47105 * 184.99451 * 3 2 1 5 5 C 1.52997 * 109.47335 * 175.03637 * 4 3 2 6 6 C 1.50700 * 110.05676 * 306.29569 * 5 4 3 7 7 O 1.21279 * 120.00489 * 113.15873 * 6 5 4 8 8 N 1.34775 * 119.99494 * 293.15904 * 6 5 4 9 9 C 1.46924 * 120.63440 * 4.38849 * 8 6 5 10 10 C 1.52759 * 109.00665 * 233.58572 * 9 8 6 11 11 C 1.53045 * 109.38494 * 305.58307 * 10 9 8 12 12 C 1.52995 * 109.46238 * 181.26145 * 11 10 9 13 13 N 1.46503 * 109.47043 * 64.93400 * 12 11 10 14 14 C 1.36939 * 120.00123 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99789 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99794 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99505 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47203 * 59.99904 * 18 16 14 20 20 H 1.48500 * 109.47070 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46883 * 299.99576 * 18 16 14 22 22 C 1.53041 * 109.53624 * 61.24224 * 11 10 9 23 23 C 1.46926 * 120.62943 * 184.66597 * 8 6 5 24 24 C 1.53873 * 110.03450 * 184.87329 * 5 4 3 25 25 C 1.54264 * 106.64115 * 240.69047 * 24 5 4 26 26 C 1.54967 * 104.16295 * 336.44686 * 25 24 5 27 27 C 1.54267 * 110.02973 * 67.70681 * 5 4 3 28 28 H 1.09004 * 109.46936 * 184.99560 * 1 2 3 29 29 H 1.09000 * 109.47041 * 304.99623 * 1 2 3 30 30 H 1.08994 * 109.46620 * 64.99830 * 1 2 3 31 31 H 1.09004 * 109.46870 * 64.99565 * 3 2 1 32 32 H 1.08997 * 109.47031 * 304.99517 * 3 2 1 33 33 H 1.09006 * 109.47032 * 55.03731 * 4 3 2 34 34 H 1.09000 * 109.46913 * 295.03819 * 4 3 2 35 35 H 1.08999 * 109.58263 * 353.41422 * 9 8 6 36 36 H 1.09002 * 109.58985 * 113.84256 * 9 8 6 37 37 H 1.09002 * 109.56594 * 185.55335 * 10 9 8 38 38 H 1.08998 * 109.36638 * 65.49943 * 10 9 8 39 39 H 1.08996 * 109.45883 * 301.22232 * 11 10 9 40 40 H 1.08995 * 109.47163 * 184.93291 * 12 11 10 41 41 H 1.08998 * 109.47371 * 304.93863 * 12 11 10 42 42 H 0.97004 * 119.99929 * 359.97438 * 13 12 11 43 43 H 0.96996 * 119.99944 * 180.02562 * 17 16 14 44 44 H 1.08993 * 109.49905 * 178.68668 * 22 11 10 45 45 H 1.09004 * 109.49458 * 58.58133 * 22 11 10 46 46 H 1.09001 * 109.58974 * 246.15804 * 23 8 6 47 47 H 1.09005 * 109.58906 * 6.58465 * 23 8 6 48 48 H 1.08997 * 110.03155 * 0.02562 * 24 5 4 49 49 H 1.08997 * 110.02993 * 121.38595 * 24 5 4 50 50 H 1.08995 * 110.48418 * 95.09319 * 25 24 5 51 51 H 1.09002 * 110.48947 * 217.73707 * 25 24 5 52 52 H 1.08997 * 110.72318 * 279.57699 * 26 25 24 53 53 H 1.09004 * 110.92561 * 156.29157 * 26 25 24 54 54 H 1.09000 * 110.49176 * 261.57409 * 27 5 4 55 55 H 1.09001 * 110.48853 * 24.08523 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5305 1.1869 -0.1256 5 6 4.1425 2.5836 -0.2501 6 6 3.4863 3.3367 -1.3785 7 8 2.8029 4.3101 -1.1414 8 7 3.6590 2.9283 -2.6512 9 6 4.4038 1.6971 -2.9480 10 6 5.5126 2.0155 -3.9493 11 6 4.9065 2.6956 -5.1791 12 6 6.0111 2.9869 -6.1968 13 7 6.5695 1.7241 -6.6863 14 6 7.5792 1.7347 -7.6113 15 1 7.9636 2.6741 -7.9803 16 6 8.1079 0.5381 -8.0754 17 7 7.6391 -0.6067 -7.6262 18 14 9.4848 0.5527 -9.3378 19 1 10.6589 1.2719 -8.7814 20 1 9.8701 -0.8433 -9.6663 21 1 9.0203 1.2412 -10.5689 22 6 4.2392 4.0080 -4.7613 23 6 3.1111 3.7092 -3.7688 24 6 5.6571 2.4752 -0.4991 25 6 6.3508 3.1868 0.6807 26 6 5.2784 4.1702 1.2139 27 6 3.9677 3.3569 1.0733 28 1 -0.3633 -1.0238 0.0895 29 1 -0.3633 0.5894 0.8419 30 1 -0.3632 0.4343 -0.9313 31 1 1.7612 1.8141 0.9314 32 1 1.6196 1.8771 -0.8418 33 1 3.7774 0.6018 -1.0115 34 1 3.9307 0.6924 0.7595 35 1 4.8433 1.3059 -2.0304 36 1 3.7291 0.9564 -3.3773 37 1 6.0078 1.0926 -4.2512 38 1 6.2382 2.6832 -3.4849 39 1 4.1632 2.0373 -5.6287 40 1 5.5955 3.5488 -7.0332 41 1 6.7982 3.5720 -5.7213 42 1 6.2245 0.8803 -6.3546 43 1 8.0089 -1.4429 -7.9502 44 1 3.8281 4.5032 -5.6409 45 1 4.9768 4.6569 -4.2891 46 1 2.3289 3.1359 -4.2664 47 1 2.6980 4.6452 -3.3927 48 1 5.9560 1.4276 -0.5318 49 1 5.9174 2.9665 -1.4366 50 1 6.6254 2.4672 1.4520 51 1 7.2299 3.7306 0.3348 52 1 5.2420 5.0706 0.6007 53 1 5.4663 4.4227 2.2575 54 1 3.1087 4.0252 1.0141 55 1 3.8545 2.6647 1.9076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206961882.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:41 Heat of formation + Delta-G solvation = -103.640189 kcal Electronic energy + Delta-G solvation = -31768.420823 eV Core-core repulsion = 27804.108962 eV Total energy + Delta-G solvation = -3964.311861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21694 -39.52396 -38.74786 -38.10561 -36.59415 -34.60964 -33.58661 -32.31809 -31.96403 -29.67637 -29.03157 -28.16565 -26.82360 -25.66165 -24.45445 -23.82948 -23.53284 -22.20725 -21.60208 -21.03278 -19.63365 -19.04741 -17.83716 -17.55141 -17.22400 -16.95497 -16.69190 -16.27283 -16.06878 -15.78721 -15.57429 -15.45366 -15.36772 -15.32409 -14.86399 -14.58494 -14.21095 -14.10766 -13.95278 -13.82224 -13.52759 -13.28607 -13.03836 -12.93071 -12.72348 -12.61156 -12.46677 -12.26442 -12.23550 -12.22432 -11.98063 -11.94810 -11.90147 -11.73108 -11.70233 -11.65146 -11.43426 -11.33531 -11.26687 -10.90049 -10.71753 -10.54072 -9.67348 -8.96949 -7.93456 -5.21386 1.48168 1.50422 1.56322 1.56654 1.96988 2.57157 2.69526 3.30339 3.39725 3.50988 3.63333 3.74288 3.78102 3.86820 4.00652 4.02200 4.08634 4.15079 4.26611 4.33240 4.36163 4.37017 4.42740 4.45799 4.48892 4.52211 4.53562 4.57689 4.66808 4.70043 4.77150 4.79371 4.81193 4.84461 4.92504 4.94141 4.99307 5.01674 5.05827 5.06362 5.07837 5.15077 5.20167 5.23911 5.27758 5.37172 5.46149 5.48608 5.53986 5.59278 6.14036 6.29111 6.38769 7.11698 7.36022 8.12031 8.36542 9.29559 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002777 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.655617 B =10081.062986 C =10521.811161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.064 3.936 4 C -0.110 4.110 5 C -0.072 4.072 6 C 0.525 3.475 7 O -0.578 6.578 8 N -0.604 5.604 9 C 0.099 3.901 10 C -0.118 4.118 11 C -0.084 4.084 12 C 0.158 3.842 13 N -0.741 5.741 14 C -0.248 4.248 15 H 0.071 0.929 16 C -0.071 4.071 17 N -0.966 5.966 18 Si 0.970 3.030 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.280 1.280 22 C -0.114 4.114 23 C 0.114 3.886 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.107 4.107 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.061 0.939 50 H 0.087 0.913 51 H 0.067 0.933 52 H 0.047 0.953 53 H 0.084 0.916 54 H 0.065 0.935 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 5.428 20.906 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.013 4.013 4 C -0.147 4.147 5 C -0.075 4.075 6 C 0.315 3.685 7 O -0.458 6.458 8 N -0.335 5.335 9 C -0.022 4.022 10 C -0.156 4.156 11 C -0.103 4.103 12 C 0.032 3.968 13 N -0.384 5.384 14 C -0.380 4.380 15 H 0.089 0.911 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.799 3.201 19 H -0.205 1.205 20 H -0.220 1.220 21 H -0.206 1.206 22 C -0.153 4.153 23 C -0.008 4.008 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.145 4.145 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.112 0.888 49 H 0.080 0.920 50 H 0.105 0.895 51 H 0.086 0.914 52 H 0.066 0.934 53 H 0.103 0.897 54 H 0.084 0.916 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.239 5.855 20.891 24.434 hybrid contribution 0.371 -0.086 -1.209 1.267 sum -10.868 5.769 19.682 23.212 Atomic orbital electron populations 1.22910 0.79756 1.03926 1.00447 1.87822 1.21223 1.28164 1.95529 1.22542 0.94319 0.84329 1.00085 1.21874 0.93054 0.94397 1.05374 1.21385 0.96615 0.95335 0.94211 1.20898 0.79694 0.83906 0.84023 1.90624 1.41576 1.29564 1.84034 1.48134 1.54315 1.25482 1.05604 1.22164 0.93696 0.85578 1.00803 1.21752 0.97495 1.01253 0.95101 1.21182 0.96742 0.97261 0.95082 1.20792 0.93690 0.88073 0.94255 1.42535 1.42281 1.03797 1.49829 1.19563 1.10394 0.92576 1.15417 0.91120 1.25495 1.02851 0.95081 1.02958 1.69783 1.46449 0.96846 1.48540 0.85268 0.79455 0.76154 0.79216 1.20515 1.22016 1.20637 1.21803 0.97645 0.96614 0.99204 1.21599 0.95786 0.96735 0.86710 1.22478 0.90939 1.02765 0.99729 1.22388 0.97670 0.98323 0.97331 1.22485 0.94323 0.97561 1.01664 1.22426 0.98946 0.98664 0.94453 0.88045 0.93060 0.94275 0.92339 0.95198 0.89797 0.87866 0.86803 0.90883 0.91507 0.91907 0.91496 0.96572 0.96715 0.79108 0.93961 0.89559 0.91977 0.90712 0.89782 0.88820 0.92013 0.89480 0.91443 0.93412 0.89701 0.91597 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.64 10.70 -148.98 -1.59 -10.23 16 3 C 0.06 1.27 5.49 71.98 0.40 1.66 16 4 C -0.11 -1.90 4.05 30.59 0.12 -1.78 16 5 C -0.07 -1.37 0.37 -52.20 -0.02 -1.39 16 6 C 0.53 13.19 4.74 87.66 0.42 13.61 16 7 O -0.58 -18.01 14.81 -3.03 -0.04 -18.05 16 8 N -0.60 -14.52 2.86 -819.73 -2.35 -16.87 16 9 C 0.10 2.27 4.33 86.22 0.37 2.64 16 10 C -0.12 -3.32 5.14 30.53 0.16 -3.17 16 11 C -0.08 -2.53 2.19 -10.77 -0.02 -2.56 16 12 C 0.16 6.20 5.65 86.38 0.49 6.69 16 13 N -0.74 -36.91 5.32 -343.46 -1.83 -38.74 16 14 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 15 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 16 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 17 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 18 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C -0.11 -2.85 5.36 30.67 0.16 -2.68 16 23 C 0.11 2.73 6.42 86.36 0.55 3.28 16 24 C -0.12 -2.13 4.35 31.32 0.14 -1.99 16 25 C -0.12 -1.80 6.84 31.70 0.22 -1.59 16 26 C -0.12 -2.03 6.91 31.91 0.22 -1.81 16 27 C -0.11 -1.89 5.02 31.67 0.16 -1.73 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 1.07 7.66 -2.38 -0.02 1.05 16 32 H 0.03 0.70 6.88 -2.39 -0.02 0.68 16 33 H 0.08 1.51 5.40 -2.38 -0.01 1.49 16 34 H 0.10 1.45 8.01 -2.39 -0.02 1.43 16 35 H 0.11 2.22 2.71 -2.39 -0.01 2.21 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 2.22 7.15 -2.39 -0.02 2.20 16 38 H 0.06 1.78 7.15 -2.39 -0.02 1.77 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 42 H 0.38 19.61 6.84 -92.71 -0.63 18.98 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 2.13 7.03 -2.38 -0.02 2.11 16 48 H 0.09 1.38 7.02 -2.39 -0.02 1.36 16 49 H 0.06 1.30 5.63 -2.39 -0.01 1.28 16 50 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 52 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 54 H 0.07 1.45 6.75 -2.39 -0.02 1.43 16 55 H 0.09 1.26 7.76 -2.39 -0.02 1.24 16 Total: -1.00 -67.80 407.09 2.64 -65.16 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.23 Total: 34.31 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.92 Total: -5.66 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -3.89 Total: -113.33 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.64 Total: -28.28 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -67.80 2.64 -65.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206961882.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.479 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds