Wall clock time and date at job start Tue Mar 31 2020 22:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42895 * 114.00045 * 2 1 4 4 H 1.09010 * 109.47115 * 30.00531 * 3 2 1 5 5 C 1.50696 * 109.47280 * 270.00311 * 3 2 1 6 6 O 1.21284 * 120.00024 * 353.30205 * 5 3 2 7 7 N 1.34781 * 120.00034 * 173.30588 * 5 3 2 8 8 C 1.46925 * 120.63192 * 355.44858 * 7 5 3 9 9 C 1.53189 * 108.89515 * 233.67942 * 8 7 5 10 10 C 1.53046 * 109.30841 * 305.28834 * 9 8 7 11 11 C 1.53000 * 109.45898 * 181.37109 * 10 9 8 12 12 N 1.46503 * 109.46912 * 175.00242 * 11 10 9 13 13 C 1.36936 * 119.99708 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00239 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99841 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99866 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00037 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47430 * 90.00014 * 17 15 13 19 19 H 1.48496 * 109.47388 * 210.00292 * 17 15 13 20 20 H 1.48504 * 109.47174 * 330.00237 * 17 15 13 21 21 C 1.53044 * 109.53695 * 61.36951 * 10 9 8 22 22 C 1.47205 * 120.81195 * 175.58612 * 7 5 3 23 23 C 1.53000 * 109.47044 * 149.99779 * 3 2 1 24 24 C 1.53001 * 109.47029 * 57.77077 * 23 3 2 25 25 C 1.52995 * 109.47521 * 179.97438 * 24 23 3 26 26 C 1.53005 * 109.46942 * 59.99324 * 25 24 23 27 27 C 1.52996 * 109.47587 * 300.00312 * 26 25 24 28 28 C 1.52994 * 109.47593 * 297.76911 * 23 3 2 29 29 H 1.09006 * 109.46802 * 299.99684 * 1 2 3 30 30 H 1.08995 * 109.46973 * 59.99589 * 1 2 3 31 31 H 1.08996 * 109.46798 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.58715 * 113.81373 * 8 7 5 33 33 H 1.09009 * 109.58359 * 353.53655 * 8 7 5 34 34 H 1.08997 * 109.50210 * 65.24175 * 9 8 7 35 35 H 1.09001 * 109.50084 * 185.31198 * 9 8 7 36 36 H 1.08999 * 109.46409 * 301.34906 * 10 9 8 37 37 H 1.09001 * 109.46987 * 295.00441 * 11 10 9 38 38 H 1.08995 * 109.46928 * 55.00488 * 11 10 9 39 39 H 0.96995 * 119.99965 * 0.02562 * 12 11 10 40 40 H 0.96997 * 119.99751 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.49861 * 58.58088 * 21 10 9 42 42 H 1.08990 * 109.49844 * 178.68160 * 21 10 9 43 43 H 1.08994 * 109.53682 * 6.54147 * 22 7 5 44 44 H 1.08998 * 109.67507 * 246.22824 * 22 7 5 45 45 H 1.09003 * 109.47062 * 177.76833 * 23 3 2 46 46 H 1.09003 * 109.46999 * 299.99794 * 24 23 3 47 47 H 1.09004 * 109.47537 * 59.99448 * 24 23 3 48 48 H 1.09003 * 109.46899 * 299.99957 * 25 24 23 49 49 H 1.08997 * 109.47386 * 179.97438 * 25 24 23 50 50 H 1.08997 * 109.46868 * 179.97438 * 26 25 24 51 51 H 1.09003 * 109.46806 * 60.00576 * 26 25 24 52 52 H 1.08995 * 109.46969 * 299.99986 * 27 26 25 53 53 H 1.08994 * 109.47136 * 179.97438 * 27 26 25 54 54 H 1.09005 * 109.47406 * 300.00311 * 28 23 3 55 55 H 1.08995 * 109.47128 * 59.99604 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5140 5 6 2.2146 1.7644 -1.4208 6 8 2.0086 1.0008 -2.3403 7 7 2.6262 3.0234 -1.6697 8 6 2.7843 3.9897 -0.5742 9 6 1.9776 5.2496 -0.9038 10 6 2.4063 5.7811 -2.2734 11 6 1.6270 7.0589 -2.5910 12 7 2.1208 7.6331 -3.8451 13 6 1.5692 8.7873 -4.3336 14 1 0.7705 9.2745 -3.7943 15 6 2.0375 9.3317 -5.5216 16 7 3.0113 8.7381 -6.1787 17 14 1.2856 10.9066 -6.1877 18 1 2.0268 12.0753 -5.6492 19 1 1.3702 10.9071 -7.6703 20 1 -0.1379 10.9894 -5.7731 21 6 2.1159 4.7276 -3.3450 22 6 2.9241 3.4617 -3.0430 23 6 3.3589 1.2632 0.7213 24 6 4.2737 0.2480 0.0332 25 6 5.6226 0.2062 0.7540 26 6 5.4091 -0.2057 2.2120 27 6 4.4944 0.8095 2.9001 28 6 3.1451 0.8510 2.1791 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8374 4.2483 -0.4643 33 1 2.4165 3.5528 0.3543 34 1 0.9153 5.0065 -0.9240 35 1 2.1626 6.0091 -0.1442 36 1 3.4738 6.0006 -2.2600 37 1 0.5676 6.8228 -2.6918 38 1 1.7638 7.7780 -1.7835 39 1 2.8379 7.1952 -4.3297 40 1 3.3383 9.1183 -7.0090 41 1 1.0522 4.4894 -3.3422 42 1 2.3997 5.1158 -4.3231 43 1 2.6469 2.6752 -3.7448 44 1 3.9885 3.6767 -3.1368 45 1 3.8205 2.2501 0.6868 46 1 3.8122 -0.7389 0.0677 47 1 4.4262 0.5416 -1.0054 48 1 6.0840 1.1931 0.7191 49 1 6.2741 -0.5174 0.2641 50 1 6.3701 -0.2359 2.7254 51 1 4.9478 -1.1926 2.2469 52 1 4.9558 1.7964 2.8652 53 1 4.3420 0.5158 3.9386 54 1 2.4933 1.5742 2.6693 55 1 2.6835 -0.1358 2.2136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206984101.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:53 Heat of formation + Delta-G solvation = -116.519500 kcal Electronic energy + Delta-G solvation = -31338.663036 eV Core-core repulsion = 27373.792686 eV Total energy + Delta-G solvation = -3964.870350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80525 -39.77923 -38.78380 -37.88254 -36.56714 -34.59248 -33.22858 -32.22190 -31.85061 -31.59771 -28.68856 -27.94263 -26.87972 -25.53217 -24.16784 -23.65947 -23.34242 -22.49694 -21.39650 -20.61708 -20.10044 -19.17728 -18.28056 -17.69187 -17.17937 -16.71278 -16.65713 -15.94747 -15.74425 -15.61644 -15.47057 -15.37688 -15.26370 -15.02061 -14.86343 -14.55230 -14.41431 -14.27373 -13.95710 -13.89044 -13.53450 -13.20053 -13.10959 -12.98803 -12.94248 -12.77484 -12.73420 -12.32219 -12.21593 -12.17445 -11.98251 -11.94075 -11.92384 -11.68300 -11.61662 -11.41528 -11.37185 -11.22802 -11.08850 -10.92269 -10.88839 -10.21127 -9.68551 -8.98683 -7.95605 -5.23676 1.46370 1.47992 1.51829 1.56343 1.86972 2.55582 2.77343 3.36159 3.38114 3.61252 3.68850 3.76773 3.85106 3.85371 3.93429 4.03869 4.11860 4.27610 4.30968 4.32753 4.39832 4.41104 4.42615 4.50704 4.52929 4.59475 4.63104 4.67430 4.69823 4.72294 4.74869 4.78821 4.82350 4.87581 4.97003 4.99683 5.05246 5.09638 5.14790 5.19941 5.27571 5.29381 5.33104 5.35301 5.41529 5.46270 5.46908 5.53118 5.55568 5.65625 6.01157 6.27253 6.40485 7.12020 7.33534 8.11168 8.33502 9.28016 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.002316 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.820455 B =12086.012073 C =12456.974490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.082 3.918 4 H 0.112 0.888 5 C 0.489 3.511 6 O -0.580 6.580 7 N -0.604 5.604 8 C 0.102 3.898 9 C -0.120 4.120 10 C -0.084 4.084 11 C 0.157 3.843 12 N -0.745 5.745 13 C -0.244 4.244 14 H 0.074 0.926 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.972 3.028 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.271 1.271 21 C -0.113 4.113 22 C 0.118 3.882 23 C -0.077 4.077 24 C -0.107 4.107 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.107 4.107 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.011 0.989 38 H 0.027 0.973 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.055 0.945 47 H 0.032 0.968 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.069 0.931 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.073 0.927 54 H 0.082 0.918 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -18.123 24.210 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C 0.020 3.980 4 H 0.129 0.871 5 C 0.278 3.722 6 O -0.460 6.460 7 N -0.338 5.338 8 C -0.019 4.019 9 C -0.158 4.158 10 C -0.103 4.103 11 C 0.030 3.970 12 N -0.388 5.388 13 C -0.376 4.376 14 H 0.092 0.908 15 C -0.269 4.269 16 N -0.621 5.621 17 Si 0.801 3.199 18 H -0.212 1.212 19 H -0.223 1.223 20 H -0.196 1.196 21 C -0.152 4.152 22 C -0.005 4.005 23 C -0.095 4.095 24 C -0.145 4.145 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.045 0.955 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.092 0.908 54 H 0.100 0.900 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.212 -18.577 23.756 30.181 hybrid contribution -0.392 0.933 -1.784 2.051 sum 0.820 -17.644 21.972 28.191 Atomic orbital electron populations 1.22998 0.79845 1.04031 1.00308 1.87963 1.20981 1.25676 1.94236 1.22286 0.98523 0.86818 0.90351 0.87097 1.22009 0.75832 0.81258 0.93145 1.90671 1.52459 1.54909 1.47939 1.48343 1.65963 1.10962 1.08540 1.22159 1.01965 0.88493 0.89298 1.21894 1.00316 0.97558 0.96039 1.21211 1.00170 0.93387 0.95493 1.20850 0.95446 0.93138 0.87536 1.42607 1.43447 1.27884 1.24855 1.19635 1.13672 1.00685 1.03626 0.90775 1.25559 0.99949 1.02761 0.98628 1.69810 1.31517 1.42516 1.18213 0.85154 0.78251 0.79630 0.76822 1.21198 1.22339 1.19552 1.21743 0.99497 0.94654 0.99292 1.21512 0.99564 0.95930 0.83457 1.21428 0.90998 1.01196 0.95881 1.21408 0.96095 0.99423 0.97538 1.21520 0.95883 1.01807 0.96187 1.21539 1.00118 0.99169 0.94821 1.21534 0.94818 0.99800 0.99212 1.21529 0.98179 1.02424 0.92271 0.91241 0.95704 0.88307 0.89149 0.86815 0.91621 0.87995 0.91011 0.97059 0.95549 0.79348 0.94042 0.93162 0.92607 0.91402 0.90451 0.87777 0.92650 0.94942 0.91447 0.92496 0.91241 0.92591 0.91045 0.90790 0.89989 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.64 16 2 O -0.37 -8.08 8.54 -130.03 -1.11 -9.19 16 3 C 0.08 1.50 1.39 29.85 0.04 1.54 16 4 H 0.11 1.41 6.78 -2.38 -0.02 1.39 16 5 C 0.49 12.87 5.88 87.66 0.52 13.38 16 6 O -0.58 -21.04 15.95 15.91 0.25 -20.78 16 7 N -0.60 -14.14 2.98 -818.19 -2.44 -16.58 16 8 C 0.10 1.60 4.93 86.36 0.43 2.03 16 9 C -0.12 -2.32 5.36 30.67 0.16 -2.16 16 10 C -0.08 -2.44 2.19 -10.76 -0.02 -2.46 16 11 C 0.16 6.00 5.65 86.38 0.49 6.48 16 12 N -0.74 -37.57 5.32 -343.45 -1.83 -39.39 16 13 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 16 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 17 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 C -0.11 -3.62 5.25 30.68 0.16 -3.46 16 22 C 0.12 3.35 6.45 86.31 0.56 3.91 16 23 C -0.08 -1.10 1.70 -10.80 -0.02 -1.12 16 24 C -0.11 -2.04 4.82 30.59 0.15 -1.89 16 25 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 26 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 27 C -0.12 -1.05 5.93 30.61 0.18 -0.87 16 28 C -0.11 -1.12 5.08 30.61 0.16 -0.96 16 29 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 30 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.08 5.01 -2.38 -0.01 1.07 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.37 20.05 6.84 -92.71 -0.63 19.42 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 2.13 7.15 -2.39 -0.02 2.11 16 43 H 0.07 2.22 7.02 -2.39 -0.02 2.20 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.10 1.20 5.95 -2.39 -0.01 1.19 16 46 H 0.05 1.24 7.62 -2.39 -0.02 1.22 16 47 H 0.03 0.79 7.29 -2.39 -0.02 0.77 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 54 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 55 H 0.06 0.82 7.74 -2.39 -0.02 0.80 16 Total: -1.00 -74.28 413.53 3.09 -71.19 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.21 Total: 29.26 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.69 Total: -3.47 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.99 Total: -115.39 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.86 Total: -29.97 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.28 3.09 -71.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206984101.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.325 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds