Wall clock time and date at job start Tue Mar 31 2020 22:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42896 * 113.99942 * 2 1 4 4 H 1.09000 * 109.47359 * 15.63354 * 3 2 1 5 5 C 1.50694 * 109.47413 * 135.63782 * 3 2 1 6 6 O 1.21287 * 119.99808 * 11.96742 * 5 3 2 7 7 N 1.34773 * 120.00140 * 192.24654 * 5 3 2 8 8 C 1.46925 * 120.62943 * 355.34612 * 7 5 3 9 9 C 1.53626 * 108.54268 * 126.36871 * 8 7 5 10 10 C 1.53049 * 109.24164 * 54.85604 * 9 8 7 11 11 C 1.52995 * 109.44744 * 178.49869 * 10 9 8 12 12 N 1.46501 * 109.47278 * 295.06213 * 11 10 9 13 13 C 1.36935 * 120.00102 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00043 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99957 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00243 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46888 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47004 * 120.00183 * 17 15 13 20 20 H 1.48498 * 109.47231 * 240.00100 * 17 15 13 21 21 C 1.53043 * 109.53491 * 298.51247 * 10 9 8 22 22 C 1.46933 * 120.63058 * 175.62789 * 7 5 3 23 23 C 1.53004 * 109.46457 * 255.63645 * 3 2 1 24 24 C 1.52996 * 109.47544 * 62.75042 * 23 3 2 25 25 C 1.52993 * 109.47131 * 179.97438 * 24 23 3 26 26 C 1.53004 * 109.47493 * 60.00385 * 25 24 23 27 27 C 1.53009 * 109.46505 * 299.99730 * 26 25 24 28 28 C 1.53000 * 109.47143 * 302.74629 * 23 3 2 29 29 H 1.08994 * 109.46728 * 304.81883 * 1 2 3 30 30 H 1.08999 * 109.46861 * 64.81823 * 1 2 3 31 31 H 1.08999 * 109.47110 * 184.81618 * 1 2 3 32 32 H 1.09001 * 109.58369 * 246.20121 * 8 7 5 33 33 H 1.08995 * 109.58677 * 6.62590 * 8 7 5 34 34 H 1.09004 * 109.63498 * 294.86954 * 9 8 7 35 35 H 1.08996 * 109.43054 * 174.72387 * 9 8 7 36 36 H 1.08997 * 109.45955 * 58.53028 * 10 9 8 37 37 H 1.08998 * 109.47598 * 55.06145 * 11 10 9 38 38 H 1.09004 * 109.46931 * 175.05898 * 11 10 9 39 39 H 0.96996 * 119.99963 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99827 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.49682 * 301.41057 * 21 10 9 42 42 H 1.09002 * 109.49005 * 181.31801 * 21 10 9 43 43 H 1.09000 * 109.58195 * 353.36759 * 22 7 5 44 44 H 1.08991 * 109.58499 * 113.65570 * 22 7 5 45 45 H 1.09009 * 109.46749 * 182.74831 * 23 3 2 46 46 H 1.08999 * 109.46903 * 299.99806 * 24 23 3 47 47 H 1.09004 * 109.47119 * 59.99787 * 24 23 3 48 48 H 1.08999 * 109.47308 * 299.99851 * 25 24 23 49 49 H 1.09004 * 109.47168 * 179.97438 * 25 24 23 50 50 H 1.08994 * 109.47665 * 180.02562 * 26 25 24 51 51 H 1.08999 * 109.47280 * 59.99448 * 26 25 24 52 52 H 1.08999 * 109.47121 * 299.99815 * 27 26 25 53 53 H 1.08997 * 109.46610 * 179.97438 * 27 26 25 54 54 H 1.09003 * 109.47403 * 300.00125 * 28 23 3 55 55 H 1.08999 * 109.47042 * 60.00354 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2540 2.0399 0.2769 5 6 3.1426 1.3513 0.9934 6 8 3.5670 0.3231 1.4769 7 7 3.6798 2.5351 1.3487 8 6 3.2425 3.7798 0.7020 9 6 2.8180 4.7743 1.7933 10 6 3.9677 4.9532 2.7876 11 6 3.5636 5.9713 3.8557 12 7 3.3793 7.2848 3.2336 13 6 3.0142 8.3598 3.9991 14 1 2.8617 8.2394 5.0615 15 6 2.8400 9.6045 3.4097 16 7 3.0263 9.7515 2.1150 17 14 2.3413 11.0709 4.4539 18 1 2.1967 10.6446 5.8690 19 1 3.3841 12.1239 4.3587 20 1 1.0472 11.6101 3.9642 21 6 4.2811 3.6118 3.4543 22 6 4.7182 2.6048 2.3859 23 6 2.5446 1.6256 -1.3975 24 6 1.3845 1.6466 -2.3947 25 6 1.9188 1.9674 -3.7920 26 6 2.9305 0.8981 -4.2092 27 6 4.0907 0.8772 -3.2119 28 6 3.5561 0.5560 -1.8142 29 1 -0.3632 0.5868 0.8436 30 1 -0.3633 0.4373 -0.9300 31 1 -0.3633 -1.0240 0.0863 32 1 4.0649 4.1986 0.1220 33 1 2.3976 3.5731 0.0453 34 1 1.9412 4.3922 2.3160 35 1 2.5798 5.7346 1.3359 36 1 4.8515 5.3118 2.2600 37 1 2.6306 5.6566 4.3232 38 1 4.3459 6.0341 4.6122 39 1 3.5166 7.3931 2.2795 40 1 2.9043 10.6211 1.7031 41 1 3.3904 3.2407 3.9614 42 1 5.0842 3.7448 4.1792 43 1 4.8470 1.6225 2.8405 44 1 5.6590 2.9273 1.9399 45 1 3.0312 2.6010 -1.3857 46 1 0.8979 0.6713 -2.4065 47 1 0.6639 2.4087 -2.0978 48 1 2.4051 2.9428 -3.7799 49 1 1.0923 1.9819 -4.5025 50 1 3.3115 1.1269 -5.2044 51 1 2.4442 -0.0773 -4.2212 52 1 4.5771 1.8526 -3.1998 53 1 4.8113 0.1152 -3.5088 54 1 4.3827 0.5411 -1.1038 55 1 3.0695 -0.4192 -1.8260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206984102.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:58 Heat of formation + Delta-G solvation = -113.421455 kcal Electronic energy + Delta-G solvation = -31472.718411 eV Core-core repulsion = 27507.982402 eV Total energy + Delta-G solvation = -3964.736009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81739 -39.89435 -38.75396 -37.87374 -36.54896 -34.59199 -33.23938 -32.08847 -31.82814 -31.65651 -28.91839 -28.03533 -26.70608 -25.38775 -24.36057 -23.64948 -23.31180 -22.46418 -21.41066 -20.72321 -20.09969 -19.14625 -18.24795 -17.63189 -17.24944 -16.71996 -16.63144 -16.00139 -15.81369 -15.64003 -15.42160 -15.36740 -15.30556 -15.07973 -14.89703 -14.49310 -14.42783 -14.22641 -13.94754 -13.80027 -13.56897 -13.23234 -13.11682 -13.03042 -12.92144 -12.77658 -12.75020 -12.46269 -12.23888 -12.11818 -12.00578 -11.95750 -11.90019 -11.67850 -11.53096 -11.46395 -11.32720 -11.21500 -11.10869 -10.91775 -10.79829 -10.26038 -9.68972 -8.96488 -7.93941 -5.21399 1.48244 1.48833 1.50716 1.58481 1.77212 2.56926 2.86207 3.36903 3.39733 3.58362 3.70435 3.75412 3.80395 3.84349 3.92445 4.02257 4.10823 4.27271 4.30286 4.34439 4.37865 4.38598 4.39489 4.51324 4.54447 4.58291 4.58320 4.65160 4.66483 4.71689 4.73202 4.80459 4.83554 4.85162 4.94982 5.01593 5.02913 5.07689 5.16186 5.17383 5.23753 5.27567 5.29921 5.31080 5.38573 5.42194 5.48306 5.54478 5.55348 5.60163 6.04780 6.29319 6.36365 7.10623 7.36299 8.12154 8.36864 9.29420 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002625 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.324596 B =10665.247975 C =11471.974009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.378 6.378 3 C 0.079 3.921 4 H 0.103 0.897 5 C 0.510 3.490 6 O -0.570 6.570 7 N -0.604 5.604 8 C 0.107 3.893 9 C -0.119 4.119 10 C -0.084 4.084 11 C 0.157 3.843 12 N -0.741 5.741 13 C -0.244 4.244 14 H 0.070 0.930 15 C -0.072 4.072 16 N -0.965 5.965 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.294 1.294 20 H -0.292 1.292 21 C -0.114 4.114 22 C 0.115 3.885 23 C -0.097 4.097 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.102 4.102 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.063 0.937 53 H 0.061 0.939 54 H 0.035 0.965 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -19.713 -12.010 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.296 6.296 3 C 0.018 3.982 4 H 0.121 0.879 5 C 0.299 3.701 6 O -0.449 6.449 7 N -0.338 5.338 8 C -0.015 4.015 9 C -0.158 4.158 10 C -0.103 4.103 11 C 0.031 3.969 12 N -0.384 5.384 13 C -0.376 4.376 14 H 0.088 0.912 15 C -0.264 4.264 16 N -0.616 5.616 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.221 1.221 20 H -0.219 1.219 21 C -0.153 4.153 22 C -0.007 4.007 23 C -0.116 4.116 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.079 0.921 54 H 0.054 0.946 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.599 -20.367 -11.576 23.571 hybrid contribution -0.260 1.270 0.571 1.416 sum -2.860 -19.097 -11.005 22.226 Atomic orbital electron populations 1.23198 0.79232 1.04061 1.01339 1.87988 1.21293 1.25570 1.94789 1.22122 0.94281 0.87261 0.94581 0.87946 1.21072 0.84011 0.82842 0.82223 1.90658 1.63280 1.34324 1.56654 1.48190 1.39915 1.06590 1.39111 1.22139 1.01430 0.83013 0.94880 1.21908 0.97916 0.99188 0.96754 1.21188 0.98578 0.94387 0.96127 1.20804 0.96829 0.84728 0.94561 1.42543 1.83131 1.04745 1.08023 1.19623 1.37045 0.88768 0.92180 0.91164 1.25479 1.03660 1.00242 0.97048 1.69795 1.57786 1.23602 1.10403 0.85143 0.77003 0.79693 0.78338 1.19450 1.22074 1.21933 1.21810 1.02294 0.93543 0.97663 1.21601 0.90337 1.00201 0.88542 1.21697 0.97817 1.00203 0.91892 1.21632 0.96395 1.02510 0.94444 1.21523 0.98998 0.98967 0.95984 1.21528 0.96041 0.99382 0.98529 1.21539 0.98059 1.01695 0.94161 1.21371 0.97246 0.98727 0.96662 0.93575 0.91666 0.88465 0.89625 0.87772 0.92142 0.91248 0.91080 0.96783 0.96522 0.79024 0.93981 0.92107 0.89452 0.90107 0.90171 0.88845 0.91343 0.90626 0.91633 0.90776 0.91234 0.92210 0.91847 0.92050 0.94576 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.41 113.37 1.18 1.45 16 2 O -0.38 -8.74 8.75 -130.22 -1.14 -9.88 16 3 C 0.08 1.64 1.53 29.85 0.05 1.68 16 4 H 0.10 1.76 6.70 -2.39 -0.02 1.74 16 5 C 0.51 13.73 5.92 87.66 0.52 14.25 16 6 O -0.57 -20.04 15.97 15.71 0.25 -19.79 16 7 N -0.60 -14.33 2.97 -818.08 -2.43 -16.76 16 8 C 0.11 2.22 5.25 86.51 0.45 2.67 16 9 C -0.12 -3.20 5.26 30.82 0.16 -3.03 16 10 C -0.08 -2.44 2.19 -10.76 -0.02 -2.47 16 11 C 0.16 6.03 5.65 86.38 0.49 6.52 16 12 N -0.74 -36.20 5.32 -343.46 -1.83 -38.03 16 13 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 14 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 16 N -0.97 -57.16 13.06 21.65 0.28 -56.88 16 17 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 C -0.11 -2.80 5.36 30.67 0.16 -2.63 16 22 C 0.12 2.73 6.42 86.36 0.55 3.28 16 23 C -0.10 -1.66 1.65 -10.79 -0.02 -1.68 16 24 C -0.11 -1.49 4.37 30.59 0.13 -1.35 16 25 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 26 C -0.12 -1.53 5.92 30.60 0.18 -1.35 16 27 C -0.12 -1.86 5.93 30.61 0.18 -1.68 16 28 C -0.10 -2.05 4.82 30.61 0.15 -1.91 16 29 H 0.05 0.67 8.03 -2.39 -0.02 0.65 16 30 H 0.06 0.73 6.28 -2.39 -0.01 0.72 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 1.72 4.70 -2.39 -0.01 1.71 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.17 7.15 -2.39 -0.02 2.16 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.38 19.17 6.84 -92.71 -0.63 18.54 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 2.10 7.03 -2.39 -0.02 2.08 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.09 1.49 5.92 -2.38 -0.01 1.47 16 46 H 0.07 0.95 6.41 -2.39 -0.02 0.93 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 54 H 0.04 0.89 7.30 -2.39 -0.02 0.87 16 55 H 0.06 1.33 7.61 -2.39 -0.02 1.31 16 Total: -1.00 -69.56 409.42 3.05 -66.51 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.22 Total: 31.04 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.66 Total: -3.62 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.97 Total: -111.67 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.89 Total: -29.67 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.56 3.05 -66.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206984102.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.907 kcal (2) G-P(sol) polarization free energy of solvation -69.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds