Wall clock time and date at job start Tue Mar 31 2020 22:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.46598 * 2 1 4 4 C 1.34226 * 116.99895 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99950 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46788 * 60.00366 * 6 4 3 8 8 C 1.53000 * 109.46935 * 180.02562 * 6 4 3 9 9 C 1.53004 * 109.46977 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.46966 * 299.99992 * 9 8 6 11 11 H 1.08998 * 109.47286 * 299.99789 * 10 9 8 12 12 C 1.53004 * 109.46966 * 180.02562 * 10 9 8 13 13 N 1.46897 * 109.47127 * 177.73293 * 12 10 9 14 14 C 1.46958 * 111.00062 * 183.87077 * 13 12 10 15 15 C 1.53051 * 109.36504 * 183.19045 * 14 13 12 16 16 N 1.46958 * 109.36337 * 301.59941 * 15 14 13 17 17 C 1.46903 * 110.99745 * 183.18905 * 16 15 14 18 18 C 1.50699 * 109.46928 * 169.99834 * 17 16 15 19 19 H 1.08004 * 120.00021 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00017 * 179.72361 * 18 17 16 21 21 N 1.31519 * 120.00022 * 0.27736 * 20 18 17 22 22 Si 1.86802 * 120.00249 * 180.27655 * 20 18 17 23 23 H 1.48494 * 109.46949 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47020 * 120.00010 * 22 20 18 25 25 H 1.48500 * 109.47060 * 240.00232 * 22 20 18 26 26 C 1.46958 * 110.88119 * 59.32009 * 16 15 14 27 27 C 1.46953 * 111.00380 * 307.67260 * 13 12 10 28 28 C 1.53000 * 109.47266 * 60.00185 * 10 9 8 29 29 C 1.52996 * 109.46768 * 299.99815 * 28 10 9 30 30 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47851 * 299.99582 * 1 2 3 32 32 H 1.09000 * 109.47389 * 60.00735 * 1 2 3 33 33 H 1.08994 * 109.47387 * 240.00155 * 2 1 3 34 34 H 1.09000 * 109.46930 * 119.99536 * 2 1 3 35 35 H 1.08998 * 109.47291 * 60.00420 * 8 6 4 36 36 H 1.09001 * 109.47294 * 300.00074 * 8 6 4 37 37 H 1.09004 * 109.47302 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.46946 * 59.99989 * 9 8 6 39 39 H 1.09002 * 109.47332 * 57.73641 * 12 10 9 40 40 H 1.09002 * 109.47238 * 297.73569 * 12 10 9 41 41 H 1.08994 * 109.49118 * 63.22072 * 14 13 12 42 42 H 1.09004 * 109.50698 * 303.16956 * 14 13 12 43 43 H 1.08999 * 109.48716 * 181.63029 * 15 14 13 44 44 H 1.09000 * 109.50700 * 61.57685 * 15 14 13 45 45 H 1.08995 * 109.47289 * 49.99956 * 17 16 15 46 46 H 1.09001 * 109.47137 * 289.99529 * 17 16 15 47 47 H 0.97003 * 119.99836 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.48709 * 60.64926 * 26 16 15 49 49 H 1.08999 * 109.48425 * 180.71349 * 26 16 15 50 50 H 1.09005 * 109.48866 * 296.78082 * 27 13 12 51 51 H 1.09002 * 109.48947 * 56.81574 * 27 13 12 52 52 H 1.08998 * 109.46839 * 59.99890 * 28 10 9 53 53 H 1.09001 * 109.46846 * 179.97438 * 28 10 9 54 54 H 1.08998 * 109.47502 * 299.99669 * 29 28 10 55 55 H 1.09004 * 109.47054 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5869 0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.5841 3.4702 0.8895 8 6 5.4484 2.8576 0.0001 9 6 6.0331 4.2716 0.0002 10 6 5.5616 5.0184 -1.2490 11 1 5.8977 4.4864 -2.1390 12 6 6.1468 6.4321 -1.2493 13 7 5.7385 7.1309 -2.4752 14 6 6.3576 8.4614 -2.5541 15 6 5.8462 9.1859 -3.8015 16 7 6.1652 8.3881 -4.9936 17 6 5.7568 9.0870 -6.2195 18 6 6.3137 8.3642 -7.4190 19 1 6.9108 7.4745 -7.2841 20 6 6.0556 8.8353 -8.6887 21 7 5.3280 9.9185 -8.8530 22 14 6.7394 7.9351 -10.1759 23 1 7.5195 6.7550 -9.7245 24 1 5.6190 7.4869 -11.0414 25 1 7.6236 8.8482 -10.9438 26 6 5.5461 7.0577 -4.9147 27 6 6.0575 6.3332 -3.6673 28 6 4.0337 5.0984 -1.2492 29 6 3.4490 3.6846 -1.2493 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.7844 2.3252 -0.8896 36 1 5.7843 2.3259 0.8903 37 1 7.1216 4.2146 0.0008 38 1 5.6970 4.8036 0.8902 39 1 7.2346 6.3751 -1.2088 40 1 5.7790 6.9778 -0.3803 41 1 7.4408 8.3554 -2.6136 42 1 6.0969 9.0375 -1.6663 43 1 6.3261 10.1616 -3.8776 44 1 4.7664 9.3164 -3.7295 45 1 6.1392 10.1075 -6.2005 46 1 4.6687 9.1076 -6.2807 47 1 5.1468 10.2501 -9.7464 48 1 4.4629 7.1637 -4.8552 49 1 5.8073 6.4818 -5.8025 50 1 7.1373 6.2029 -3.7395 51 1 5.5779 5.3573 -3.5909 52 1 3.6977 5.6306 -0.3592 53 1 3.6978 5.6310 -2.1390 54 1 3.7850 3.1525 -2.1392 55 1 2.3605 3.7415 -1.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209001117.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:51 Heat of formation + Delta-G solvation = -120.214918 kcal Electronic energy + Delta-G solvation = -30241.337799 eV Core-core repulsion = 26276.307204 eV Total energy + Delta-G solvation = -3965.030596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79205 -40.50493 -39.13470 -37.69257 -36.53501 -34.65535 -33.14268 -32.33548 -31.83590 -31.52531 -29.84298 -27.61472 -25.85280 -24.70323 -24.23064 -23.53279 -23.33152 -22.69949 -21.34300 -20.76746 -20.29468 -18.68882 -18.48721 -17.61857 -17.54218 -17.25618 -16.44323 -16.23097 -15.80883 -15.77808 -15.55587 -15.31961 -15.17746 -14.97468 -14.66620 -14.57724 -14.51741 -13.96551 -13.73737 -13.51227 -13.37484 -13.23024 -13.11971 -13.04625 -12.91151 -12.74951 -12.65272 -12.52193 -12.43455 -12.28095 -12.13214 -12.05250 -12.00058 -11.94315 -11.67528 -11.55044 -11.46200 -11.17466 -11.10523 -10.99974 -10.91452 -10.62822 -9.22176 -8.99618 -8.21428 -6.31679 1.13297 1.40034 1.40518 1.54268 1.68570 2.39418 2.98917 3.10736 3.32590 3.52283 3.69420 3.76555 3.94983 3.98465 4.04839 4.06563 4.13401 4.24356 4.28595 4.31746 4.33996 4.41225 4.47312 4.49174 4.53557 4.57709 4.60798 4.72317 4.77754 4.83459 4.88777 4.90326 4.90727 4.97594 5.01201 5.05637 5.07862 5.10264 5.15469 5.16229 5.19157 5.24005 5.28214 5.29902 5.36418 5.46651 5.56754 5.62485 5.63822 6.03014 6.13388 6.19946 6.38612 6.64629 6.69880 6.84647 7.38098 8.89956 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002172 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.683165 B =12887.894748 C =14089.735209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.073 4.073 7 H 0.131 0.869 8 C -0.098 4.098 9 C -0.102 4.102 10 C -0.089 4.089 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.540 5.540 14 C 0.072 3.928 15 C 0.054 3.946 16 N -0.546 5.546 17 C 0.208 3.792 18 C -0.522 4.522 19 H 0.061 0.939 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.278 1.278 26 C 0.070 3.930 27 C 0.069 3.931 28 C -0.097 4.097 29 C -0.106 4.106 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.003 0.997 46 H -0.041 1.041 47 H 0.265 0.735 48 H 0.016 0.984 49 H 0.063 0.937 50 H 0.030 0.970 51 H 0.094 0.906 52 H 0.077 0.923 53 H 0.063 0.937 54 H 0.054 0.946 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 -16.184 24.236 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.091 4.091 7 H 0.149 0.851 8 C -0.136 4.136 9 C -0.140 4.140 10 C -0.108 4.108 11 H 0.081 0.919 12 C -0.063 4.063 13 N -0.265 5.265 14 C -0.057 4.057 15 C -0.074 4.074 16 N -0.271 5.271 17 C 0.082 3.918 18 C -0.560 4.560 19 H 0.080 0.920 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.059 4.059 27 C -0.059 4.059 28 C -0.135 4.135 29 C -0.143 4.143 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.040 0.960 45 H 0.021 0.979 46 H -0.023 1.023 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.081 0.919 50 H 0.048 0.952 51 H 0.112 0.888 52 H 0.096 0.904 53 H 0.081 0.919 54 H 0.073 0.927 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.661 -16.381 24.115 29.697 hybrid contribution 0.198 -0.249 -1.386 1.422 sum -5.463 -16.631 22.728 28.688 Atomic orbital electron populations 1.21822 0.90577 1.04294 1.03716 1.23256 0.97034 0.79482 1.02358 1.86531 1.24320 1.33421 1.83482 1.24370 0.80499 0.93334 0.70830 1.90644 1.61121 1.44450 1.46942 1.21228 0.96660 0.88139 1.03116 0.85141 1.21380 0.91548 0.97892 1.02747 1.21490 1.00723 0.93855 0.97951 1.21293 0.96169 0.94529 0.98787 0.91912 1.22199 0.97609 0.94481 0.92048 1.62195 1.58972 1.02925 1.02423 1.22050 0.96407 0.90181 0.97019 1.22163 0.97913 0.96847 0.90524 1.62216 1.58947 1.03604 1.02335 1.19350 0.91662 0.93356 0.87433 1.21465 1.31835 1.11582 0.91102 0.92045 1.25937 0.95525 0.95970 1.02363 1.70099 1.40037 1.24003 1.23349 0.85318 0.78156 0.78622 0.78420 1.18782 1.20323 1.20336 1.21968 0.95344 0.90698 0.97891 1.22124 0.98254 0.96794 0.88730 1.21401 0.94042 0.94796 1.03221 1.21505 1.01468 0.96234 0.95136 0.88361 0.91046 0.91536 0.91812 0.91198 0.92669 0.91015 0.90942 0.89769 0.94893 0.89123 0.94745 0.88234 0.91344 0.96040 0.97854 1.02290 0.92667 0.96614 0.91879 0.95215 0.88752 0.90399 0.91857 0.92736 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 71.98 0.74 -0.59 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.55 10.12 -51.38 -0.52 -7.07 16 4 C 0.46 9.21 7.26 71.24 0.52 9.73 16 5 O -0.54 -13.88 15.73 21.97 0.35 -13.54 16 6 C -0.07 -1.07 2.63 -11.54 -0.03 -1.10 16 7 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 8 C -0.10 -1.48 4.49 30.60 0.14 -1.34 16 9 C -0.10 -1.29 5.20 30.59 0.16 -1.13 16 10 C -0.09 -1.45 1.71 -10.79 -0.02 -1.47 16 11 H 0.06 1.22 6.11 -2.39 -0.01 1.20 16 12 C 0.06 1.18 4.55 86.31 0.39 1.58 16 13 N -0.54 -14.00 4.15 -895.72 -3.72 -17.72 16 14 C 0.07 1.99 5.62 86.31 0.48 2.47 16 15 C 0.05 1.99 5.61 86.31 0.48 2.47 16 16 N -0.55 -24.44 4.70 -900.29 -4.23 -28.67 16 17 C 0.21 11.48 4.72 85.56 0.40 11.89 16 18 C -0.52 -30.21 8.47 25.60 0.22 -30.00 16 19 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 20 C 0.00 0.00 5.46 84.65 0.46 0.46 16 21 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 22 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.07 2.78 5.43 86.31 0.47 3.25 16 27 C 0.07 2.08 5.12 86.31 0.44 2.52 16 28 C -0.10 -1.57 5.00 30.59 0.15 -1.42 16 29 C -0.11 -1.66 5.14 30.59 0.16 -1.50 16 30 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.98 8.13 -2.39 -0.02 0.97 16 34 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 35 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.03 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.07 2.49 8.07 -2.39 -0.02 2.48 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.00 0.20 8.03 -2.39 -0.02 0.18 16 46 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 47 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.06 2.75 6.79 -2.39 -0.02 2.73 16 50 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.09 2.48 5.87 -2.39 -0.01 2.47 16 52 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 53 H 0.06 1.33 7.63 -2.39 -0.02 1.31 16 54 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 55 H 0.08 1.20 8.11 -2.38 -0.02 1.18 16 Total: -1.00 -69.94 420.48 0.62 -69.32 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.82 Total: 10.54 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.62 Total: -2.99 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -7.66 Total: -103.19 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.17 Total: -20.61 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.94 0.62 -69.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209001117.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.895 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds