Wall clock time and date at job start Tue Mar 31 2020 22:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99555 * 2 1 4 4 H 1.09001 * 110.78265 * 26.76681 * 3 2 1 5 5 C 1.54324 * 110.72242 * 263.52133 * 3 2 1 6 6 N 1.47024 * 107.26968 * 219.44802 * 5 3 2 7 7 C 1.36936 * 125.64486 * 178.89536 * 6 5 3 8 8 H 1.08004 * 120.00129 * 180.02562 * 7 6 5 9 9 C 1.38806 * 120.00170 * 0.02562 * 7 6 5 10 10 N 1.31622 * 120.00044 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47132 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46759 * 120.00108 * 11 9 7 14 14 H 1.48499 * 109.47377 * 240.00073 * 11 9 7 15 15 C 1.47425 * 108.70597 * 358.94259 * 6 5 3 16 16 C 1.54910 * 104.83287 * 24.12374 * 15 6 5 17 17 H 1.09003 * 111.03265 * 81.08011 * 16 15 6 18 18 N 1.46494 * 111.00790 * 204.91538 * 16 15 6 19 19 C 1.34778 * 120.00044 * 267.20340 * 18 16 15 20 20 O 1.21276 * 120.00110 * 359.97438 * 19 18 16 21 21 C 1.50705 * 119.99557 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.46839 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46953 * 180.02562 * 22 21 19 24 24 C 1.50546 * 108.91612 * 62.10135 * 23 22 21 25 25 C 1.54245 * 108.48390 * 215.01671 * 24 23 22 26 26 C 1.45542 * 112.32700 * 279.88442 * 25 24 23 27 27 C 1.54245 * 112.40792 * 61.98392 * 26 25 24 28 28 C 1.50476 * 108.51856 * 280.00900 * 27 26 25 29 29 C 1.54056 * 112.50048 * 94.15187 * 28 27 26 30 30 H 1.09002 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47434 * 299.99712 * 1 2 3 32 32 H 1.09003 * 109.47463 * 60.00061 * 1 2 3 33 33 H 1.08999 * 109.88065 * 338.86010 * 5 3 2 34 34 H 1.08998 * 109.88063 * 99.87599 * 5 3 2 35 35 H 0.96997 * 119.99880 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.36447 * 265.29329 * 15 6 5 37 37 H 1.09000 * 110.36718 * 142.97031 * 15 6 5 38 38 H 0.97000 * 120.00024 * 87.19595 * 18 16 15 39 39 H 1.09004 * 109.46997 * 60.00067 * 21 19 18 40 40 H 1.09002 * 109.47492 * 300.00071 * 21 19 18 41 41 H 1.09004 * 109.47013 * 60.00393 * 22 21 19 42 42 H 1.09004 * 109.47019 * 300.00074 * 22 21 19 43 43 H 1.09000 * 108.76958 * 303.50837 * 23 22 21 44 44 H 1.09000 * 109.72188 * 95.27899 * 24 23 22 45 45 H 1.08999 * 109.57838 * 334.67684 * 24 23 22 46 46 H 1.09002 * 108.89744 * 159.17865 * 25 24 23 47 47 H 1.09003 * 108.89355 * 40.58995 * 25 24 23 48 48 H 1.08997 * 108.89204 * 182.73719 * 26 25 24 49 49 H 1.09001 * 108.89537 * 301.32910 * 26 25 24 50 50 H 1.09002 * 109.62642 * 39.71377 * 27 26 25 51 51 H 1.08994 * 109.63072 * 160.10279 * 27 26 25 52 52 H 1.09003 * 108.87568 * 214.93364 * 28 27 26 53 53 H 1.09003 * 108.87347 * 333.47062 * 28 27 26 54 54 H 1.09000 * 108.81295 * 79.14131 * 29 28 27 55 55 H 1.09001 * 108.81915 * 197.53224 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3361 2.0289 0.4590 5 6 2.3810 1.7381 -1.4342 6 7 3.6684 2.4440 -1.3580 7 6 4.3547 2.9692 -2.4203 8 1 5.2972 3.4713 -2.2593 9 6 3.8389 2.8562 -3.7040 10 7 2.6900 2.2447 -3.9002 11 14 4.7748 3.5732 -5.1530 12 1 6.0287 4.2045 -4.6689 13 1 5.1053 2.4900 -6.1136 14 1 3.9346 4.5945 -5.8285 15 6 4.0987 2.4918 0.0512 16 6 3.3815 1.2958 0.7257 17 1 3.9154 0.3639 0.5395 18 7 3.2167 1.5251 2.1632 19 6 4.1463 1.0738 3.0285 20 8 5.1190 0.4776 2.6172 21 6 3.9769 1.3102 4.5072 22 6 5.1616 0.7014 5.2600 23 6 4.9894 0.9408 6.7613 24 6 3.7366 0.2470 7.2256 25 6 3.0846 1.1028 8.3309 26 6 3.7222 0.9131 9.6254 27 6 5.2050 1.3377 9.6184 28 6 6.0165 0.2297 9.0034 29 6 6.2468 0.4354 7.4941 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.4768 0.8602 -2.0731 34 1 1.6138 2.4032 -1.8308 35 1 2.3298 2.1655 -4.7973 36 1 3.7870 3.4295 0.5114 37 1 5.1801 2.3747 0.1219 38 1 2.4386 2.0017 2.4922 39 1 3.0524 0.8428 4.8463 40 1 3.9346 2.3820 4.7014 41 1 6.0863 1.1685 4.9209 42 1 5.2035 -0.3704 5.0657 43 1 4.8859 2.0117 6.9361 44 1 3.9867 -0.7364 7.6236 45 1 3.0460 0.1416 6.3889 46 1 2.0320 0.8317 8.4127 47 1 3.1572 2.1542 8.0523 48 1 3.1895 1.5034 10.3710 49 1 3.6593 -0.1402 9.8988 50 1 5.3225 2.2476 9.0299 51 1 5.5395 1.5167 10.6402 52 1 6.9833 0.1808 9.5044 53 1 5.4940 -0.7151 9.1535 54 1 7.0490 1.1604 7.3566 55 1 6.5517 -0.5133 7.0524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213183020.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:35 Heat of formation + Delta-G solvation = -103.984178 kcal Electronic energy + Delta-G solvation = -30253.675576 eV Core-core repulsion = 26289.348798 eV Total energy + Delta-G solvation = -3964.326778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14907 -40.12929 -39.46626 -37.51877 -35.64981 -35.38482 -33.69660 -33.17359 -31.33380 -30.39284 -28.84978 -27.53137 -26.65914 -25.88565 -25.51833 -23.19872 -22.23997 -21.92477 -21.36936 -21.15944 -19.89599 -19.13870 -18.23276 -17.74513 -17.24420 -16.69133 -16.51109 -16.35806 -15.82421 -15.77115 -15.65566 -15.43800 -15.10303 -14.97575 -14.77467 -14.57746 -14.19041 -14.00902 -13.77981 -13.63738 -13.45905 -13.21239 -13.06714 -13.00137 -12.79948 -12.74680 -12.67676 -12.54978 -12.31385 -12.04692 -11.88900 -11.88345 -11.64893 -11.55645 -11.36157 -11.28505 -11.04870 -11.01723 -10.95437 -10.84635 -10.79674 -10.55204 -10.04821 -8.98330 -7.89114 -5.27436 1.44283 1.46237 1.56551 1.70326 2.12165 2.45544 2.77814 3.30215 3.53670 3.65212 3.75885 3.80686 3.86256 3.92187 4.04486 4.09952 4.14065 4.18923 4.36668 4.41961 4.45570 4.46059 4.49060 4.53346 4.57760 4.60053 4.64863 4.69265 4.74925 4.81225 4.87372 4.92093 4.98564 5.00508 5.03847 5.18899 5.26516 5.29081 5.32794 5.34416 5.37246 5.39565 5.41703 5.45657 5.48224 5.51654 5.58898 5.64657 5.66064 5.72987 6.12113 6.31921 6.61417 7.03200 7.33864 7.68169 8.30713 9.20552 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002101 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.590837 B =13324.781634 C =14334.319607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.076 3.924 4 H 0.099 0.901 5 C 0.174 3.826 6 N -0.623 5.623 7 C -0.245 4.245 8 H 0.083 0.917 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.287 1.287 15 C 0.131 3.869 16 C 0.149 3.851 17 H 0.070 0.930 18 N -0.704 5.704 19 C 0.506 3.494 20 O -0.590 6.590 21 C -0.129 4.129 22 C -0.098 4.098 23 C -0.075 4.075 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.115 4.115 29 C -0.114 4.114 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.249 0.751 36 H 0.045 0.955 37 H 0.032 0.968 38 H 0.417 0.583 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.058 0.942 53 H 0.059 0.941 54 H 0.055 0.945 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 -1.239 29.249 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.017 3.983 4 H 0.117 0.883 5 C 0.048 3.952 6 N -0.351 5.351 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.258 4.258 10 N -0.598 5.598 11 Si 0.810 3.190 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.213 1.213 15 C 0.005 3.995 16 C 0.042 3.958 17 H 0.088 0.912 18 N -0.356 5.356 19 C 0.295 3.705 20 O -0.470 6.470 21 C -0.168 4.168 22 C -0.137 4.137 23 C -0.094 4.094 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.152 4.152 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.254 0.746 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.076 0.924 53 H 0.077 0.923 54 H 0.074 0.926 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.009 -1.814 28.769 28.983 hybrid contribution 0.102 0.450 -1.482 1.552 sum -2.907 -1.364 27.288 27.476 Atomic orbital electron populations 1.22994 0.79296 1.03869 1.00810 1.87899 1.21812 1.27071 1.94924 1.23507 0.93731 0.85247 0.95794 0.88341 1.21287 0.87153 0.94622 0.92088 1.44549 1.22014 1.66401 1.02095 1.19483 1.02639 1.29409 0.85865 0.89939 1.25703 0.98508 1.01496 1.00049 1.70172 1.20548 1.48436 1.20639 0.84957 0.77969 0.77237 0.78827 1.19049 1.22000 1.21331 1.21936 0.97117 0.95905 0.84585 1.21782 0.95434 0.98097 0.80508 0.91189 1.45761 1.26166 1.58755 1.04896 1.21648 0.81418 0.76988 0.90429 1.90703 1.32129 1.43252 1.80956 1.21825 1.02368 1.05216 0.87372 1.21416 0.96974 1.00475 0.94788 1.20943 0.95075 1.00977 0.92384 1.21552 0.96287 0.99019 0.98661 1.20472 0.99601 1.00338 0.94941 1.20496 0.95757 1.01404 0.97860 1.21343 0.95017 0.98558 1.00584 1.21309 1.00145 0.99188 0.94633 1.21956 0.97251 1.00788 0.95180 0.88229 0.91507 0.94693 0.96683 0.95922 0.94195 0.93743 0.94940 0.74553 0.85997 0.86221 0.93147 0.93107 0.90370 0.92250 0.90920 0.91874 0.91689 0.92012 0.92542 0.91715 0.91748 0.92363 0.92277 0.92594 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.40 -14.50 10.43 -148.98 -1.55 -16.05 16 3 C 0.08 2.86 3.09 31.78 0.10 2.96 16 4 H 0.10 2.98 7.69 -2.39 -0.02 2.96 16 5 C 0.17 8.82 5.15 86.73 0.45 9.27 16 6 N -0.62 -33.28 3.39 -691.99 -2.35 -35.63 16 7 C -0.25 -14.21 10.28 84.03 0.86 -13.35 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 10 N -0.95 -57.90 10.31 21.65 0.22 -57.67 16 11 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 15 C 0.13 5.70 6.93 86.86 0.60 6.30 16 16 C 0.15 5.63 3.15 46.39 0.15 5.77 16 17 H 0.07 3.19 7.54 -2.39 -0.02 3.17 16 18 N -0.70 -18.91 5.20 -435.96 -2.27 -21.17 16 19 C 0.51 14.16 7.83 87.66 0.69 14.85 16 20 O -0.59 -23.03 15.62 -3.02 -0.05 -23.07 16 21 C -0.13 -2.13 5.46 29.85 0.16 -1.97 16 22 C -0.10 -1.86 3.81 30.60 0.12 -1.74 16 23 C -0.08 -1.02 1.72 -11.23 -0.02 -1.04 16 24 C -0.12 -1.37 4.98 30.22 0.15 -1.22 16 25 C -0.12 -1.11 5.27 28.74 0.15 -0.96 16 26 C -0.12 -1.13 5.26 28.74 0.15 -0.98 16 27 C -0.12 -1.22 5.61 30.20 0.17 -1.05 16 28 C -0.12 -1.38 5.32 30.13 0.16 -1.22 16 29 C -0.11 -1.64 5.23 31.31 0.16 -1.47 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.01 0.88 7.29 -2.39 -0.02 0.87 16 34 H 0.02 1.24 7.51 -2.39 -0.02 1.22 16 35 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 7.68 8.57 -92.71 -0.79 6.89 16 39 H 0.12 1.42 6.07 -2.38 -0.01 1.40 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 42 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 43 H 0.08 0.94 6.63 -2.39 -0.02 0.93 16 44 H 0.06 0.77 6.96 -2.39 -0.02 0.75 16 45 H 0.07 0.79 5.56 -2.39 -0.01 0.78 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 0.58 7.46 -2.39 -0.02 0.56 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.06 0.57 7.46 -2.39 -0.02 0.56 16 50 H 0.06 0.70 6.98 -2.39 -0.02 0.68 16 51 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.06 0.72 6.62 -2.39 -0.02 0.70 16 54 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 55 H 0.05 0.82 7.97 -2.39 -0.02 0.80 16 Total: -1.00 -76.03 413.42 1.84 -74.19 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.06 Total: 17.90 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.74 Total: 12.79 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -4.39 Total: -114.48 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.60 Total: -39.12 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -76.03 1.84 -74.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213183020.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.793 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds