Wall clock time and date at job start Tue Mar 31 2020 22:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99725 * 2 1 4 4 H 1.08996 * 110.88764 * 32.42997 * 3 2 1 5 5 C 1.54907 * 111.00497 * 268.54239 * 3 2 1 6 6 N 1.47424 * 104.83193 * 204.88144 * 5 3 2 7 7 C 1.36942 * 125.64266 * 204.09160 * 6 5 3 8 8 H 1.07995 * 120.00447 * 11.47317 * 7 6 5 9 9 C 1.38812 * 119.99331 * 191.47100 * 7 6 5 10 10 N 1.31622 * 119.99622 * 206.10057 * 9 7 6 11 11 Si 1.86799 * 120.00266 * 26.38282 * 9 7 6 12 12 H 1.48503 * 109.46688 * 275.46238 * 11 9 7 13 13 H 1.48503 * 109.47131 * 35.45985 * 11 9 7 14 14 H 1.48498 * 109.47239 * 155.46280 * 11 9 7 15 15 C 1.47013 * 108.70549 * 24.35567 * 6 5 3 16 16 C 1.54339 * 107.26610 * 358.58682 * 15 6 5 17 17 H 1.08998 * 110.66860 * 96.52569 * 16 15 6 18 18 N 1.46496 * 110.84904 * 219.67317 * 16 15 6 19 19 C 1.34781 * 120.00207 * 268.69111 * 18 16 15 20 20 O 1.21285 * 119.99648 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00486 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47517 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47242 * 179.97438 * 22 21 19 24 24 C 1.53002 * 109.46949 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.46946 * 294.99574 * 24 23 22 26 26 C 1.52997 * 109.46718 * 180.02562 * 25 24 23 27 27 C 1.52997 * 109.47360 * 60.00298 * 26 25 24 28 28 C 1.52996 * 109.47249 * 299.99670 * 27 26 25 29 29 C 1.53003 * 109.46766 * 174.99823 * 24 23 22 30 30 H 1.09003 * 109.46586 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47059 * 299.99919 * 1 2 3 32 32 H 1.08998 * 109.46881 * 60.00321 * 1 2 3 33 33 H 1.08998 * 110.36657 * 86.03708 * 5 3 2 34 34 H 1.09004 * 110.36340 * 323.72303 * 5 3 2 35 35 H 0.97001 * 119.99817 * 180.02562 * 10 9 7 36 36 H 1.09006 * 109.88312 * 118.12950 * 15 6 5 37 37 H 1.09000 * 109.88471 * 239.29509 * 15 6 5 38 38 H 0.97003 * 120.00095 * 88.68815 * 18 16 15 39 39 H 1.09004 * 109.46784 * 299.99860 * 21 19 18 40 40 H 1.09002 * 109.46964 * 59.99589 * 21 19 18 41 41 H 1.09004 * 109.46846 * 299.99658 * 22 21 19 42 42 H 1.08997 * 109.47137 * 59.99427 * 22 21 19 43 43 H 1.09004 * 109.46955 * 299.99633 * 23 22 21 44 44 H 1.08997 * 109.47488 * 59.99684 * 23 22 21 45 45 H 1.08997 * 109.47276 * 55.00284 * 24 23 22 46 46 H 1.08996 * 109.47132 * 299.99955 * 25 24 23 47 47 H 1.09000 * 109.46942 * 60.00215 * 25 24 23 48 48 H 1.09000 * 109.47438 * 300.00070 * 26 25 24 49 49 H 1.09007 * 109.47218 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.47242 * 179.97438 * 27 26 25 51 51 H 1.09008 * 109.47181 * 59.99823 * 27 26 25 52 52 H 1.09000 * 109.46984 * 299.99881 * 28 27 26 53 53 H 1.09000 * 109.47230 * 180.02562 * 28 27 26 54 54 H 1.08994 * 109.47353 * 300.00037 * 29 24 23 55 55 H 1.09008 * 109.47251 * 60.00054 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3830 2.0101 0.5461 5 6 2.2696 1.7978 -1.4457 6 7 3.3605 2.7814 -1.3193 7 6 3.6225 3.7995 -2.1968 8 1 2.9046 4.0496 -2.9639 9 6 4.8110 4.5103 -2.1002 10 7 4.8747 5.7489 -2.5410 11 14 6.3219 3.7063 -1.3518 12 1 6.2743 3.8428 0.1262 13 1 6.3480 2.2667 -1.7153 14 1 7.5445 4.3703 -1.8711 15 6 4.1242 2.4842 -0.0988 16 6 3.4484 1.2749 0.5814 17 1 3.9545 0.3484 0.3101 18 7 3.4229 1.4422 2.0366 19 6 4.4336 0.9621 2.7880 20 8 5.3640 0.3912 2.2595 21 6 4.4071 1.1338 4.2849 22 6 5.6621 0.5043 4.8928 23 6 5.6355 0.6791 6.4125 24 6 6.8903 0.0490 7.0204 25 6 6.8663 -1.4628 6.7864 26 6 8.1207 -2.0929 7.3949 27 6 8.1558 -1.8100 8.8980 28 6 8.1798 -0.2982 9.1320 29 6 6.9259 0.3320 8.5236 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.3759 2.2723 -1.8509 34 1 2.5794 0.9669 -2.0795 35 1 5.7053 6.2454 -2.4738 36 1 5.1546 2.2389 -0.3567 37 1 4.1022 3.3440 0.5709 38 1 2.6786 1.8986 2.4593 39 1 4.3794 2.1959 4.5284 40 1 3.5216 0.6447 4.6911 41 1 5.6902 -0.5579 4.6493 42 1 6.5473 0.9937 4.4865 43 1 5.6076 1.7413 6.6556 44 1 4.7503 0.1900 6.8191 45 1 7.7758 0.4757 6.5493 46 1 5.9808 -1.8894 7.2576 47 1 6.8408 -1.6644 5.7155 48 1 9.0065 -1.6664 6.9241 49 1 8.1039 -3.1700 7.2278 50 1 9.0493 -2.2593 9.3316 51 1 7.2700 -2.2366 9.3689 52 1 9.0655 0.1283 8.6613 53 1 8.2053 -0.0967 10.2030 54 1 6.9429 1.4090 8.6903 55 1 6.0403 -0.0946 8.9948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213814344.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:40 Heat of formation + Delta-G solvation = -109.178809 kcal Electronic energy + Delta-G solvation = -30074.381477 eV Core-core repulsion = 26109.829443 eV Total energy + Delta-G solvation = -3964.552034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24901 -39.96438 -39.54454 -37.74028 -35.76361 -35.51451 -34.07001 -32.21625 -31.59761 -30.84739 -29.55093 -27.63132 -27.47717 -25.76019 -24.06785 -23.30933 -22.55905 -22.24049 -21.48766 -21.17756 -20.57238 -19.18849 -18.49725 -17.83095 -17.55647 -16.82885 -16.64095 -16.31320 -16.19849 -15.74280 -15.67575 -15.35175 -15.31521 -15.06386 -14.83734 -14.71702 -14.46274 -14.27662 -13.95194 -13.90819 -13.74806 -13.36153 -13.16567 -13.04762 -12.99238 -12.73013 -12.63150 -12.54498 -12.31338 -12.23608 -12.20510 -11.96255 -11.86711 -11.81311 -11.50485 -11.40233 -11.28943 -11.10461 -10.94306 -10.81327 -10.75543 -10.63033 -10.12728 -9.26030 -8.27248 -5.48151 1.19846 1.29747 1.37437 1.60667 2.04027 2.30424 2.52347 2.98991 3.32518 3.42041 3.68674 3.75384 3.79593 3.83171 3.89464 3.92493 4.09649 4.14310 4.15999 4.30399 4.35158 4.35616 4.52661 4.54813 4.60056 4.61379 4.62326 4.63129 4.67973 4.71758 4.75301 4.82387 4.82635 4.86876 4.88428 4.90364 4.93979 5.00771 5.12599 5.17142 5.22246 5.27770 5.32147 5.36693 5.40348 5.42092 5.47087 5.51710 5.57130 5.65880 6.00379 6.19723 6.50919 6.62585 7.23857 7.43787 7.95852 8.91595 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.002426 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.760965 B =11540.199821 C =13106.865509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.093 3.907 4 H 0.106 0.894 5 C 0.111 3.889 6 N -0.620 5.620 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.024 4.024 10 N -0.940 5.940 11 Si 0.934 3.066 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.303 1.303 15 C 0.110 3.890 16 C 0.149 3.851 17 H 0.082 0.918 18 N -0.707 5.707 19 C 0.503 3.497 20 O -0.591 6.591 21 C -0.128 4.128 22 C -0.104 4.104 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.122 4.122 29 C -0.110 4.110 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.007 0.993 37 H 0.041 0.959 38 H 0.419 0.581 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.053 0.947 53 H 0.069 0.931 54 H 0.064 0.936 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 -14.087 26.234 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.033 3.967 4 H 0.124 0.876 5 C -0.014 4.014 6 N -0.349 5.349 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.219 4.219 10 N -0.587 5.587 11 Si 0.767 3.233 12 H -0.211 1.211 13 H -0.219 1.219 14 H -0.232 1.232 15 C -0.016 4.016 16 C 0.043 3.957 17 H 0.101 0.899 18 N -0.359 5.359 19 C 0.292 3.708 20 O -0.470 6.470 21 C -0.168 4.168 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.159 4.159 29 C -0.148 4.148 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.257 0.743 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.072 0.928 53 H 0.088 0.912 54 H 0.083 0.917 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.452 -14.475 25.787 29.905 hybrid contribution 0.999 0.310 -0.517 1.167 sum -3.453 -14.165 25.270 29.174 Atomic orbital electron populations 1.23063 0.78755 1.04168 1.01319 1.87906 1.22127 1.26033 1.94900 1.23280 0.92553 0.85573 0.95285 0.87623 1.22190 0.91625 0.91518 0.96098 1.44746 1.33586 1.33080 1.23439 1.18681 1.01719 1.04907 1.10571 0.90116 1.25213 0.99753 0.96130 1.00848 1.69952 1.27383 1.08499 1.52822 0.86214 0.81701 0.77521 0.77912 1.21116 1.21885 1.23151 1.21994 0.94334 0.96362 0.88897 1.21585 0.96157 0.97028 0.80980 0.89939 1.45821 1.25142 1.59519 1.05436 1.21754 0.80787 0.76598 0.91633 1.90699 1.36147 1.44376 1.75823 1.21756 1.02264 1.05256 0.87477 1.21358 0.96122 1.00775 0.95955 1.21591 0.98325 1.01537 0.92821 1.21156 0.97940 0.95451 0.96135 1.21623 0.98333 0.95238 1.00117 1.21558 0.97919 1.00324 0.96268 1.21523 1.02043 0.96280 0.95604 1.21544 0.98050 0.95529 1.00793 1.21549 0.98362 1.00623 0.94237 0.87985 0.92045 0.93414 0.91258 0.95034 0.92671 0.97522 0.94084 0.74260 0.86661 0.85424 0.92342 0.93956 0.90945 0.90237 0.92817 0.91330 0.93099 0.93042 0.91975 0.91871 0.91574 0.92838 0.91239 0.91712 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.89 113.37 1.23 1.64 16 2 O -0.39 -10.72 10.52 -148.98 -1.57 -12.29 16 3 C 0.09 2.80 3.12 31.99 0.10 2.90 16 4 H 0.11 2.62 7.77 -2.39 -0.02 2.60 16 5 C 0.11 4.26 6.97 86.85 0.61 4.87 16 6 N -0.62 -30.33 3.28 -691.97 -2.27 -32.60 16 7 C -0.23 -13.29 10.57 84.03 0.89 -12.40 16 8 H 0.08 4.85 8.06 -2.91 -0.02 4.83 16 9 C -0.02 -1.44 5.43 84.86 0.46 -0.98 16 10 N -0.94 -59.35 13.97 21.65 0.30 -59.04 16 11 Si 0.93 50.99 24.30 68.60 1.67 52.66 16 12 H -0.28 -15.13 6.74 99.48 0.67 -14.46 16 13 H -0.29 -16.27 6.74 99.48 0.67 -15.60 16 14 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 15 C 0.11 5.06 4.70 86.74 0.41 5.47 16 16 C 0.15 5.36 3.05 46.19 0.14 5.50 16 17 H 0.08 3.38 7.55 -2.39 -0.02 3.37 16 18 N -0.71 -19.39 5.11 -436.89 -2.23 -21.62 16 19 C 0.50 14.76 7.83 87.66 0.69 15.44 16 20 O -0.59 -23.74 15.63 -3.04 -0.05 -23.79 16 21 C -0.13 -2.28 5.70 29.85 0.17 -2.11 16 22 C -0.10 -2.09 4.26 30.59 0.13 -1.96 16 23 C -0.11 -1.46 4.68 30.59 0.14 -1.31 16 24 C -0.09 -1.33 2.19 -10.79 -0.02 -1.35 16 25 C -0.12 -1.81 4.96 30.59 0.15 -1.66 16 26 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 27 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 28 C -0.12 -1.48 5.92 30.58 0.18 -1.29 16 29 C -0.11 -1.34 5.20 30.58 0.16 -1.18 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 0.85 8.11 -2.39 -0.02 0.83 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.03 1.26 8.14 -2.38 -0.02 1.25 16 35 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.01 0.38 3.74 -2.38 -0.01 0.37 16 37 H 0.04 1.92 7.74 -2.39 -0.02 1.90 16 38 H 0.42 7.90 8.56 -92.71 -0.79 7.11 16 39 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.33 6.52 -2.38 -0.02 1.32 16 42 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 43 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.05 0.96 6.56 -2.39 -0.02 0.94 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 52 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 55 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -77.41 418.26 1.63 -75.78 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -0.02 Total: 12.21 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.80 Total: 8.68 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -4.20 Total: -113.26 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.61 Total: -36.08 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.67 Total: 52.66 kcal Total: -77.41 1.63 -75.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213814344.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.394 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds