Wall clock time and date at job start Tue Mar 31 2020 22:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47068 * 2 1 4 4 C 1.42893 * 113.99764 * 186.29153 * 3 2 1 5 5 H 1.08999 * 109.47622 * 339.27397 * 4 3 2 6 6 C 1.53009 * 109.46872 * 219.27477 * 4 3 2 7 7 C 1.50699 * 109.46992 * 64.99809 * 6 4 3 8 8 O 1.21284 * 120.00261 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99629 * 179.97438 * 7 6 4 10 10 C 1.47148 * 121.22058 * 359.72159 * 9 7 6 11 11 C 1.53295 * 107.74103 * 122.70845 * 10 9 7 12 12 C 1.53100 * 110.51004 * 57.54587 * 11 10 9 13 13 H 1.09003 * 113.05832 * 70.89272 * 12 11 10 14 14 C 1.56032 * 106.38676 * 195.32135 * 12 11 10 15 15 C 1.54503 * 102.60723 * 78.36671 * 14 12 11 16 16 N 1.46654 * 107.03233 * 22.26733 * 15 14 12 17 17 C 1.36930 * 125.63953 * 182.09352 * 16 15 14 18 18 H 1.08006 * 119.99813 * 180.56820 * 17 16 15 19 19 C 1.38805 * 120.00198 * 0.55764 * 17 16 15 20 20 N 1.31622 * 119.99784 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00247 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47200 * 60.00056 * 21 19 17 23 23 H 1.48499 * 109.47135 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47138 * 300.00402 * 21 19 17 25 25 C 1.46473 * 108.29759 * 2.57244 * 16 15 14 26 26 H 1.08994 * 108.42940 * 88.74127 * 25 16 15 27 27 C 1.46764 * 121.21245 * 180.02562 * 9 7 6 28 28 C 1.53000 * 109.47528 * 99.27472 * 4 3 2 29 29 C 1.52996 * 109.47231 * 183.84412 * 28 4 3 30 30 C 1.52997 * 109.47281 * 303.84619 * 28 4 3 31 31 H 1.09001 * 109.46913 * 299.99746 * 1 2 3 32 32 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46780 * 60.00074 * 1 2 3 34 34 H 1.09005 * 109.47093 * 119.99996 * 2 1 3 35 35 H 1.09001 * 109.46628 * 239.99785 * 2 1 3 36 36 H 1.09001 * 109.46938 * 184.99895 * 6 4 3 37 37 H 1.09002 * 109.46969 * 305.00065 * 6 4 3 38 38 H 1.09008 * 109.75593 * 242.35216 * 10 9 7 39 39 H 1.08999 * 109.76163 * 3.11028 * 10 9 7 40 40 H 1.09000 * 109.38079 * 297.22563 * 11 10 9 41 41 H 1.08994 * 109.16577 * 177.72945 * 11 10 9 42 42 H 1.08996 * 110.77654 * 196.64495 * 14 12 11 43 43 H 1.08997 * 110.77975 * 319.89815 * 14 12 11 44 44 H 1.09003 * 109.89875 * 142.23546 * 15 14 12 45 45 H 1.08994 * 109.90424 * 263.29201 * 15 14 12 46 46 H 0.97007 * 119.99616 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.23373 * 352.82809 * 27 9 7 48 48 H 1.09002 * 109.23053 * 112.23896 * 27 9 7 49 49 H 1.09003 * 109.47052 * 63.84892 * 28 4 3 50 50 H 1.08997 * 109.47132 * 60.00251 * 29 28 4 51 51 H 1.09006 * 109.47536 * 180.02562 * 29 28 4 52 52 H 1.09007 * 109.47270 * 299.99945 * 29 28 4 53 53 H 1.09003 * 109.46966 * 64.56429 * 30 28 4 54 54 H 1.08994 * 109.47008 * 184.56550 * 30 28 4 55 55 H 1.09002 * 109.46964 * 304.57089 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4234 1.4627 -0.1431 5 1 3.8951 0.5214 0.1392 6 6 3.9380 2.5829 0.7634 7 6 3.7121 2.2062 2.2050 8 8 3.1913 1.1460 2.4804 9 7 4.0897 3.0471 3.1882 10 6 4.7302 4.3366 2.8848 11 6 3.8807 5.4417 3.5228 12 6 3.7474 5.2128 5.0307 13 1 4.6751 5.3936 5.5736 14 6 2.5757 6.1238 5.5123 15 6 1.3268 5.3230 5.0808 16 7 1.7418 3.9237 4.9382 17 6 0.9401 2.8914 4.5299 18 1 1.3399 1.8901 4.4658 19 6 -0.3862 3.1317 4.1987 20 7 -0.8732 4.3520 4.2766 21 14 -1.4800 1.7233 3.6424 22 1 -1.5582 0.7026 4.7181 23 1 -2.8412 2.2397 3.3493 24 1 -0.9100 1.1082 2.4169 25 6 3.1528 3.8215 5.3178 26 1 3.2085 3.6379 6.3907 27 6 3.8830 2.7070 4.6009 28 6 3.7644 1.7874 -1.5988 29 6 5.2842 1.8165 -1.7724 30 6 3.1669 0.7165 -2.5137 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 5.0038 2.7306 0.5891 37 1 3.4020 3.5055 0.5407 38 1 5.7371 4.3551 3.3022 39 1 4.7753 4.4808 1.8054 40 1 2.8890 5.4423 3.0703 41 1 4.3569 6.4061 3.3463 42 1 2.6013 6.2466 6.5950 43 1 2.6089 7.0925 5.0138 44 1 0.5479 5.4140 5.8380 45 1 0.9595 5.6952 4.1245 46 1 -1.8001 4.5200 4.0448 47 1 3.2952 1.7916 4.6675 48 1 4.8505 2.5478 5.0771 49 1 3.3502 2.7612 -1.8604 50 1 5.6984 0.8428 -1.5108 51 1 5.5272 2.0483 -2.8094 52 1 5.7099 2.5795 -1.1206 53 1 2.0793 0.7506 -2.4508 54 1 3.4774 0.9026 -3.5418 55 1 3.5184 -0.2665 -2.2001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222891233.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:40 Heat of formation + Delta-G solvation = -83.297348 kcal Electronic energy + Delta-G solvation = -33229.038448 eV Core-core repulsion = 29265.608718 eV Total energy + Delta-G solvation = -3963.429730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41658 -40.17400 -38.96740 -36.44858 -35.99295 -34.60957 -33.00576 -32.50678 -31.47778 -30.15554 -29.99443 -27.86719 -26.47771 -25.97742 -24.36767 -23.83138 -23.67272 -21.72484 -21.18853 -20.78743 -19.58648 -18.43964 -18.03785 -17.96211 -17.00964 -16.80787 -16.60518 -16.17364 -15.97019 -15.61676 -15.30208 -15.21689 -15.00559 -14.56606 -14.53320 -14.10064 -13.99190 -13.94604 -13.64246 -13.49537 -13.30261 -13.10624 -13.08188 -12.93919 -12.87678 -12.83209 -12.64668 -12.58877 -12.33956 -12.29459 -12.10388 -11.94037 -11.90698 -11.64264 -11.56057 -11.46993 -11.37276 -11.23371 -11.09088 -10.60482 -10.52884 -10.22062 -9.38019 -8.78339 -7.81066 -5.11362 1.35405 1.40014 1.47613 1.86931 2.27968 2.50917 2.83535 3.37749 3.51380 3.67989 3.77265 3.89914 3.97548 4.03847 4.08470 4.13995 4.19244 4.26150 4.34463 4.38127 4.42400 4.46814 4.48985 4.53400 4.55747 4.63748 4.69996 4.72116 4.75325 4.81534 4.85271 4.89674 4.91341 4.94098 4.98424 5.04603 5.05405 5.08588 5.16757 5.18706 5.20360 5.26680 5.35323 5.42698 5.47401 5.55290 5.68619 5.73805 5.80026 5.84659 6.26060 6.44997 6.70277 7.18510 7.46701 7.87518 8.48112 9.28284 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.005578 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.354035 B = 5018.195757 C = 6985.048720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 O -0.397 6.397 4 C 0.108 3.892 5 H 0.056 0.944 6 C -0.133 4.133 7 C 0.510 3.490 8 O -0.581 6.581 9 N -0.602 5.602 10 C 0.108 3.892 11 C -0.119 4.119 12 C -0.084 4.084 13 H 0.123 0.877 14 C -0.131 4.131 15 C 0.188 3.812 16 N -0.604 5.604 17 C -0.196 4.196 18 H 0.062 0.938 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.942 3.058 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.261 1.261 25 C 0.141 3.859 26 H 0.022 0.978 27 C 0.120 3.880 28 C -0.109 4.109 29 C -0.143 4.143 30 C -0.147 4.147 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.030 0.970 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.081 0.919 44 H -0.007 1.007 45 H 0.007 0.993 46 H 0.239 0.761 47 H 0.047 0.953 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.072 0.928 52 H 0.070 0.930 53 H 0.045 0.955 54 H 0.073 0.927 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.424 -0.105 -10.885 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 O -0.317 6.317 4 C 0.050 3.950 5 H 0.074 0.926 6 C -0.173 4.173 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.334 5.334 10 C -0.013 4.013 11 C -0.157 4.157 12 C -0.103 4.103 13 H 0.140 0.860 14 C -0.169 4.169 15 C 0.063 3.937 16 N -0.329 5.329 17 C -0.326 4.326 18 H 0.080 0.920 19 C -0.256 4.256 20 N -0.602 5.602 21 Si 0.773 3.227 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.187 1.187 25 C 0.034 3.966 26 H 0.040 0.960 27 C -0.004 4.004 28 C -0.128 4.128 29 C -0.200 4.200 30 C -0.204 4.204 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.049 0.951 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.011 0.989 45 H 0.025 0.975 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.088 0.912 53 H 0.064 0.936 54 H 0.092 0.908 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.816 -0.548 -10.790 20.836 hybrid contribution -1.854 -0.986 0.292 2.120 sum 15.962 -1.534 -10.498 19.166 Atomic orbital electron populations 1.21956 0.94863 1.02858 1.02074 1.22460 0.94869 0.83850 0.99678 1.87908 1.22504 1.26977 1.94279 1.21977 0.81350 0.97391 0.94297 0.92575 1.22005 1.04857 1.00706 0.89710 1.21039 0.76739 0.83662 0.88619 1.90623 1.44223 1.26504 1.84769 1.47997 1.59953 1.19955 1.05514 1.22076 0.96563 0.80728 1.01941 1.21867 0.99675 0.99550 0.94643 1.22425 0.97955 0.93134 0.96760 0.85960 1.23046 0.94958 0.98406 1.00518 1.20794 0.92965 0.83480 0.96440 1.44290 1.06362 1.04583 1.77625 1.18955 0.91069 0.88219 1.34367 0.91976 1.25281 0.98486 0.98244 1.03580 1.70166 1.13649 1.19385 1.57021 0.85731 0.78079 0.79685 0.79201 1.21707 1.22352 1.18744 1.21045 0.84526 0.95370 0.95628 0.96040 1.21153 0.99535 0.98052 0.81635 1.21563 0.97973 1.00331 0.92962 1.21871 0.92584 1.02528 1.03062 1.21862 1.00489 0.98213 0.99807 0.94774 0.89326 0.91381 0.95514 0.90984 0.84152 0.88820 0.87766 0.88240 0.95121 0.88114 0.91601 0.90090 0.98907 0.97498 0.95122 0.93430 0.89151 0.90802 0.92450 0.90860 0.91159 0.93587 0.90810 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 10.28 71.98 0.74 -4.84 16 2 C 0.07 2.34 5.77 71.98 0.42 2.76 16 3 O -0.40 -15.04 8.80 -135.21 -1.19 -16.23 16 4 C 0.11 3.11 1.41 30.60 0.04 3.15 16 5 H 0.06 1.68 7.53 -2.39 -0.02 1.66 16 6 C -0.13 -3.68 3.62 29.85 0.11 -3.57 16 7 C 0.51 19.11 7.60 87.66 0.67 19.78 16 8 O -0.58 -27.34 14.47 10.73 0.16 -27.19 16 9 N -0.60 -20.14 2.96 -822.12 -2.43 -22.57 16 10 C 0.11 2.48 6.39 86.35 0.55 3.03 16 11 C -0.12 -3.26 5.05 30.73 0.16 -3.10 16 12 C -0.08 -2.47 3.68 -9.37 -0.03 -2.51 16 13 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.13 -4.57 6.32 32.16 0.20 -4.37 16 15 C 0.19 9.51 4.58 86.86 0.40 9.91 16 16 N -0.60 -31.46 3.13 -675.99 -2.12 -33.58 16 17 C -0.20 -11.80 9.69 84.03 0.81 -10.99 16 18 H 0.06 3.91 6.53 -2.91 -0.02 3.89 16 19 C -0.06 -3.97 5.49 84.86 0.47 -3.51 16 20 N -0.95 -61.16 10.31 21.65 0.22 -60.94 16 21 Si 0.94 51.26 29.55 68.60 2.03 53.28 16 22 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 23 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 24 H -0.26 -13.96 4.57 99.48 0.45 -13.50 16 25 C 0.14 5.59 3.00 44.78 0.13 5.72 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 C 0.12 4.45 5.67 85.78 0.49 4.93 16 28 C -0.11 -2.27 2.70 -10.80 -0.03 -2.29 16 29 C -0.14 -2.03 8.93 71.98 0.64 -1.38 16 30 C -0.15 -2.87 7.75 71.98 0.56 -2.31 16 31 H 0.03 1.48 5.61 -2.39 -0.01 1.47 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.05 7.80 -2.38 -0.02 1.03 16 35 H 0.07 1.97 5.72 -2.39 -0.01 1.96 16 36 H 0.14 2.53 6.05 -2.39 -0.01 2.52 16 37 H 0.09 2.70 7.80 -2.39 -0.02 2.68 16 38 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.10 1.83 6.02 -2.39 -0.01 1.81 16 40 H 0.03 1.17 6.84 -2.39 -0.02 1.15 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 2.48 7.98 -2.39 -0.02 2.46 16 44 H -0.01 -0.42 7.59 -2.39 -0.02 -0.44 16 45 H 0.01 0.39 6.96 -2.39 -0.02 0.37 16 46 H 0.24 15.22 8.31 -92.70 -0.77 14.45 16 47 H 0.05 2.20 5.57 -2.39 -0.01 2.19 16 48 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.07 0.83 6.42 -2.38 -0.02 0.81 16 53 H 0.05 1.05 6.82 -2.39 -0.02 1.04 16 54 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 55 H 0.05 1.02 7.68 -2.39 -0.02 1.00 16 Total: -1.00 -83.39 400.90 3.58 -79.81 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.60 Total: 16.99 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.32 Total: 10.41 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.33 Total: -117.08 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.04 Total: -43.41 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.03 Total: 53.28 kcal Total: -83.39 3.58 -79.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222891233.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.487 kcal (2) G-P(sol) polarization free energy of solvation -83.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds