Wall clock time and date at job start Tue Mar 31 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47080 * 2 1 4 4 C 1.42899 * 114.00001 * 185.09156 * 3 2 1 5 5 H 1.09000 * 109.47391 * 14.51203 * 4 3 2 6 6 C 1.52999 * 109.47597 * 134.51546 * 4 3 2 7 7 C 1.50705 * 109.46816 * 294.99960 * 6 4 3 8 8 O 1.21284 * 120.00018 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99823 * 180.02562 * 7 6 4 10 10 C 1.44750 * 117.18717 * 359.97438 * 9 7 6 11 11 C 1.51489 * 111.70835 * 213.73978 * 10 9 7 12 12 C 1.49443 * 114.08584 * 317.17762 * 11 10 9 13 13 H 1.09005 * 107.67515 * 165.90674 * 12 11 10 14 14 C 1.54519 * 112.97423 * 284.23204 * 12 11 10 15 15 C 1.55252 * 100.54260 * 165.82051 * 14 12 11 16 16 N 1.47464 * 105.14594 * 323.75291 * 15 14 12 17 17 C 1.36935 * 125.66571 * 200.99677 * 16 15 14 18 18 H 1.08002 * 120.00097 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00150 * 0.02714 * 17 16 15 20 20 N 1.31614 * 119.99542 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00007 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47043 * 59.99958 * 21 19 17 23 23 H 1.48503 * 109.46642 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46943 * 299.99765 * 21 19 17 25 25 C 1.48537 * 108.53665 * 20.97537 * 16 15 14 26 26 H 1.09009 * 108.75317 * 121.12150 * 25 16 15 27 27 C 1.43784 * 117.18212 * 180.02562 * 9 7 6 28 28 C 1.53002 * 109.46924 * 254.51085 * 4 3 2 29 29 C 1.53006 * 109.47056 * 54.52179 * 28 4 3 30 30 C 1.53000 * 109.47227 * 174.51694 * 28 4 3 31 31 H 1.08999 * 109.47431 * 60.00182 * 1 2 3 32 32 H 1.08995 * 109.46909 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47012 * 299.99856 * 1 2 3 34 34 H 1.08996 * 109.47440 * 240.00332 * 2 1 3 35 35 H 1.08999 * 109.47431 * 119.99818 * 2 1 3 36 36 H 1.09002 * 109.47612 * 174.99820 * 6 4 3 37 37 H 1.08997 * 109.47205 * 54.99599 * 6 4 3 38 38 H 1.09000 * 109.03054 * 93.16584 * 10 9 7 39 39 H 1.09005 * 108.97265 * 334.27616 * 10 9 7 40 40 H 1.09001 * 108.55834 * 195.98897 * 11 10 9 41 41 H 1.08996 * 108.44037 * 78.28222 * 11 10 9 42 42 H 1.08999 * 111.20354 * 47.99859 * 14 12 11 43 43 H 1.09006 * 111.23866 * 283.65653 * 14 12 11 44 44 H 1.09004 * 110.32433 * 82.70315 * 15 14 12 45 45 H 1.08997 * 110.32158 * 204.80626 * 15 14 12 46 46 H 0.97003 * 120.00114 * 180.02562 * 20 19 17 47 47 H 1.09008 * 108.05798 * 279.09272 * 27 9 7 48 48 H 1.09002 * 108.06254 * 35.62000 * 27 9 7 49 49 H 1.08999 * 109.47090 * 294.52336 * 28 4 3 50 50 H 1.08997 * 109.47165 * 58.78666 * 29 28 4 51 51 H 1.09000 * 109.47258 * 178.79761 * 29 28 4 52 52 H 1.09003 * 109.46539 * 298.79171 * 29 28 4 53 53 H 1.09000 * 109.46764 * 60.00801 * 30 28 4 54 54 H 1.09000 * 109.47081 * 179.97438 * 30 28 4 55 55 H 1.08993 * 109.47295 * 300.00056 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4260 1.4619 -0.1159 5 1 3.8425 0.5074 -0.4377 6 6 3.7684 2.5408 -1.1452 7 6 3.2911 2.1055 -2.5068 8 8 2.7326 1.0373 -2.6407 9 7 3.4859 2.9028 -3.5758 10 6 4.1592 4.1635 -3.3466 11 6 3.6410 5.2507 -4.2655 12 6 3.4357 4.8087 -5.6782 13 1 2.8370 5.5694 -6.1794 14 6 4.7582 4.6718 -6.4655 15 6 4.2709 3.8698 -7.7023 16 7 3.2483 2.9432 -7.1822 17 6 2.8338 1.7885 -7.7904 18 1 2.0750 1.1761 -7.3263 19 6 3.3890 1.4052 -9.0036 20 7 4.3134 2.1519 -9.5694 21 14 2.8240 -0.1704 -9.8330 22 1 1.3685 -0.0868 -10.1149 23 1 3.5649 -0.3522 -11.1070 24 1 3.0892 -1.3242 -8.9366 25 6 2.7452 3.4729 -5.8889 26 1 1.6698 3.6319 -5.9699 27 6 3.0059 2.4282 -4.8453 28 6 4.0191 1.8455 1.2414 29 6 3.5632 0.8391 2.2999 30 6 5.5464 1.8347 1.1519 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 4.8478 2.6906 -1.1693 37 1 3.2781 3.4745 -0.8697 38 1 5.2276 4.0322 -3.5184 39 1 4.0005 4.4671 -2.3118 40 1 4.3516 6.0772 -4.2603 41 1 2.6898 5.6097 -3.8726 42 1 5.4987 4.1087 -5.8974 43 1 5.1473 5.6475 -6.7567 44 1 3.8328 4.5415 -8.4405 45 1 5.0980 3.3126 -8.1421 46 1 4.7011 1.8842 -10.4173 47 1 3.7405 1.7286 -5.2442 48 1 2.0797 1.8799 -4.6729 49 1 3.6782 2.8432 1.5179 50 1 3.8855 -0.1616 2.0125 51 1 4.0029 1.1001 3.2626 52 1 2.4763 0.8622 2.3788 53 1 5.8712 2.5517 0.3979 54 1 5.9689 2.1085 2.1187 55 1 5.8872 0.8371 0.8754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222891234.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:44 Heat of formation + Delta-G solvation = -81.582933 kcal Electronic energy + Delta-G solvation = -31813.207330 eV Core-core repulsion = 27849.851943 eV Total energy + Delta-G solvation = -3963.355387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76104 -40.20892 -39.08240 -36.82051 -36.01778 -34.81334 -33.39114 -32.57386 -31.58036 -30.50478 -30.01667 -27.83549 -26.54924 -26.10100 -24.44386 -23.96512 -23.62625 -22.17668 -21.13588 -20.73747 -18.99222 -18.63222 -18.26450 -17.96244 -16.99067 -16.97712 -16.83752 -16.43274 -16.26828 -15.67791 -15.39642 -15.18588 -15.02185 -14.71029 -14.54732 -14.23159 -14.16598 -13.84756 -13.63438 -13.52929 -13.31781 -13.23919 -13.00027 -12.93802 -12.89559 -12.85653 -12.70118 -12.62184 -12.45778 -12.41054 -12.08041 -12.06528 -11.89027 -11.65712 -11.60454 -11.48584 -11.37156 -11.27341 -11.10618 -10.80377 -10.67043 -10.26212 -9.48264 -8.96492 -7.82686 -5.24893 1.40316 1.43209 1.49588 1.70778 2.10645 2.44777 2.80438 3.27048 3.49490 3.55545 3.74154 3.77605 3.84491 4.01523 4.05940 4.13249 4.21608 4.23438 4.27288 4.30507 4.35542 4.47409 4.48231 4.50895 4.52750 4.56322 4.69704 4.74006 4.76056 4.82362 4.88467 4.93584 4.95392 4.96422 5.02550 5.03807 5.07596 5.09051 5.11211 5.18749 5.23209 5.29224 5.35824 5.45144 5.46320 5.48946 5.52836 5.67760 5.76208 5.81903 6.25541 6.38891 6.49517 7.07480 7.28511 7.72592 8.36613 9.19801 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003166 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.086634 B = 8841.393375 C =10064.798944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 O -0.388 6.388 4 C 0.106 3.894 5 H 0.047 0.953 6 C -0.136 4.136 7 C 0.493 3.507 8 O -0.584 6.584 9 N -0.594 5.594 10 C 0.102 3.898 11 C -0.109 4.109 12 C -0.080 4.080 13 H 0.068 0.932 14 C -0.121 4.121 15 C 0.157 3.843 16 N -0.619 5.619 17 C -0.237 4.237 18 H 0.068 0.932 19 C -0.061 4.061 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.283 1.283 25 C 0.158 3.842 26 H 0.022 0.978 27 C 0.138 3.862 28 C -0.103 4.103 29 C -0.146 4.146 30 C -0.149 4.149 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.093 0.907 44 H -0.012 1.012 45 H 0.059 0.941 46 H 0.248 0.752 47 H 0.026 0.974 48 H 0.033 0.967 49 H 0.088 0.912 50 H 0.046 0.954 51 H 0.070 0.930 52 H 0.052 0.948 53 H 0.070 0.930 54 H 0.072 0.928 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 6.546 25.483 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 O -0.308 6.308 4 C 0.048 3.952 5 H 0.065 0.935 6 C -0.175 4.175 7 C 0.282 3.718 8 O -0.464 6.464 9 N -0.326 5.326 10 C -0.020 4.020 11 C -0.147 4.147 12 C -0.099 4.099 13 H 0.086 0.914 14 C -0.159 4.159 15 C 0.032 3.968 16 N -0.344 5.344 17 C -0.366 4.366 18 H 0.086 0.914 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.209 1.209 25 C 0.052 3.948 26 H 0.040 0.960 27 C 0.012 3.988 28 C -0.122 4.122 29 C -0.204 4.204 30 C -0.206 4.206 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.006 0.994 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.089 0.911 52 H 0.071 0.929 53 H 0.089 0.911 54 H 0.091 0.909 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.138 6.071 25.153 25.963 hybrid contribution -0.523 -1.612 -1.627 2.349 sum 1.615 4.459 23.526 23.999 Atomic orbital electron populations 1.21703 0.93608 1.02763 1.02145 1.22508 0.95745 0.83727 0.99422 1.87786 1.21755 1.26941 1.94307 1.21980 0.81529 0.97419 0.94300 0.93452 1.22162 1.04742 1.01728 0.88858 1.21595 0.78562 0.84072 0.87525 1.90644 1.44224 1.24939 1.86590 1.46915 1.58068 1.20710 1.06925 1.21332 0.96770 0.81975 1.01902 1.20669 1.03748 0.98690 0.91556 1.20609 0.96951 0.94505 0.97859 0.91399 1.22880 0.96318 1.00362 0.96318 1.21669 0.92005 0.90256 0.92878 1.45329 1.45050 1.23747 1.20315 1.19237 1.17133 0.98266 1.01933 0.91413 1.25520 0.99602 1.01951 0.98311 1.70085 1.31105 1.39476 1.18723 0.85244 0.77652 0.79478 0.77551 1.20523 1.21280 1.20916 1.20291 0.96141 0.92946 0.85440 0.96049 1.20371 0.97565 0.96848 0.84025 1.21499 0.96401 1.01014 0.93306 1.21828 1.01328 0.98420 0.98793 1.21911 0.93376 1.02147 1.03193 0.94080 0.89984 0.91083 0.95325 0.92213 0.84823 0.85724 0.91133 0.86217 0.86671 0.90650 0.91954 0.88846 0.99363 0.92246 0.94278 0.95613 0.94814 0.89380 0.93524 0.91134 0.92886 0.91109 0.90889 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 10.28 71.98 0.74 -2.50 16 2 C 0.06 1.57 5.72 71.98 0.41 1.98 16 3 O -0.39 -10.11 8.67 -135.21 -1.17 -11.29 16 4 C 0.11 2.27 1.39 30.59 0.04 2.31 16 5 H 0.05 1.21 7.40 -2.39 -0.02 1.19 16 6 C -0.14 -2.64 3.64 29.85 0.11 -2.53 16 7 C 0.49 15.50 7.43 87.66 0.65 16.15 16 8 O -0.58 -23.98 13.66 10.73 0.15 -23.84 16 9 N -0.59 -18.64 3.12 -841.58 -2.63 -21.26 16 10 C 0.10 2.05 5.88 86.21 0.51 2.56 16 11 C -0.11 -2.21 5.44 28.96 0.16 -2.06 16 12 C -0.08 -2.53 2.47 -11.80 -0.03 -2.56 16 13 H 0.07 2.13 8.13 -2.38 -0.02 2.11 16 14 C -0.12 -4.16 6.54 31.88 0.21 -3.95 16 15 C 0.16 7.75 5.76 86.97 0.50 8.25 16 16 N -0.62 -32.75 2.94 -673.80 -1.98 -34.73 16 17 C -0.24 -13.95 9.59 84.03 0.81 -13.14 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 20 N -0.94 -57.54 10.15 21.65 0.22 -57.32 16 21 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 25 C 0.16 6.73 3.38 43.23 0.15 6.88 16 26 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 27 C 0.14 5.84 5.31 85.90 0.46 6.29 16 28 C -0.10 -1.49 2.69 -10.79 -0.03 -1.52 16 29 C -0.15 -2.10 7.98 71.98 0.57 -1.53 16 30 C -0.15 -1.66 8.96 71.98 0.65 -1.01 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.03 0.89 7.16 -2.39 -0.02 0.87 16 35 H 0.06 1.24 6.53 -2.39 -0.02 1.22 16 36 H 0.13 1.78 6.25 -2.39 -0.01 1.77 16 37 H 0.12 1.85 7.23 -2.39 -0.02 1.83 16 38 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 39 H 0.12 1.45 5.83 -2.38 -0.01 1.44 16 40 H 0.12 1.59 8.09 -2.39 -0.02 1.57 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 43 H 0.09 2.63 8.14 -2.38 -0.02 2.62 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.06 3.37 6.09 -2.39 -0.01 3.36 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.03 1.30 7.46 -2.38 -0.02 1.28 16 48 H 0.03 1.59 7.26 -2.39 -0.02 1.57 16 49 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.05 0.70 8.05 -2.39 -0.02 0.69 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.05 0.86 6.81 -2.39 -0.02 0.85 16 53 H 0.07 0.63 6.48 -2.39 -0.02 0.61 16 54 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 55 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.81 408.05 3.82 -74.00 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.84 Total: 13.92 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.36 Total: 10.50 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -4.39 Total: -113.32 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.03 Total: -35.12 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -77.81 3.82 -74.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222891234.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.587 kcal (2) G-P(sol) polarization free energy of solvation -77.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds