Wall clock time and date at job start Tue Mar 31 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99878 * 2 1 4 4 C 1.52996 * 109.47121 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46987 * 300.00065 * 4 3 2 6 6 O 1.21290 * 119.99544 * 239.99917 * 5 4 3 7 7 N 1.34770 * 120.00782 * 59.99954 * 5 4 3 8 8 C 1.46495 * 120.00960 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46613 * 34.99756 * 8 7 5 10 10 C 1.52998 * 109.46958 * 275.00168 * 8 7 5 11 11 C 1.53001 * 109.47229 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47259 * 59.99879 * 11 10 8 13 13 C 1.53012 * 109.46981 * 300.00142 * 12 11 10 14 14 C 1.52995 * 109.47436 * 155.00040 * 8 7 5 15 15 H 1.08994 * 109.47294 * 59.99974 * 14 8 7 16 16 N 1.46505 * 109.47024 * 300.00014 * 14 8 7 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 14 8 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.53000 * 109.47358 * 59.99493 * 4 3 2 26 26 C 1.52996 * 109.47358 * 179.97438 * 25 4 3 27 27 C 1.53010 * 109.47230 * 300.00515 * 26 25 4 28 28 C 1.52993 * 109.47133 * 59.99582 * 27 26 25 29 29 C 1.52996 * 109.47404 * 300.00311 * 28 27 26 30 30 H 1.08997 * 109.47367 * 300.00287 * 1 2 3 31 31 H 1.09000 * 109.46926 * 60.00192 * 1 2 3 32 32 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46824 * 59.99876 * 3 2 1 34 34 H 1.09001 * 109.46923 * 299.99767 * 3 2 1 35 35 H 0.97002 * 119.99359 * 359.97438 * 7 5 4 36 36 H 1.08993 * 109.47492 * 299.99710 * 10 8 7 37 37 H 1.09002 * 109.47259 * 59.99478 * 10 8 7 38 38 H 1.08998 * 109.47334 * 180.02562 * 11 10 8 39 39 H 1.09002 * 109.46839 * 299.99891 * 11 10 8 40 40 H 1.08994 * 109.47028 * 59.99969 * 12 11 10 41 41 H 1.08999 * 109.47724 * 180.02562 * 12 11 10 42 42 H 1.08994 * 109.47099 * 299.99784 * 13 12 11 43 43 H 1.08991 * 109.46870 * 179.97438 * 13 12 11 44 44 H 0.97000 * 119.99792 * 334.99921 * 16 14 8 45 45 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.47647 * 300.00443 * 25 4 3 47 47 H 1.09004 * 109.46302 * 60.00284 * 25 4 3 48 48 H 1.09003 * 109.47250 * 180.02562 * 26 25 4 49 49 H 1.09001 * 109.47154 * 60.00282 * 26 25 4 50 50 H 1.09001 * 109.46862 * 299.99945 * 27 26 25 51 51 H 1.08993 * 109.46957 * 180.02562 * 27 26 25 52 52 H 1.08996 * 109.47409 * 179.97438 * 28 27 26 53 53 H 1.09001 * 109.46950 * 60.00417 * 28 27 26 54 54 H 1.09001 * 109.47154 * 299.99981 * 29 28 27 55 55 H 1.09003 * 109.47250 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9796 0.4371 1.2314 6 8 4.7209 0.9699 2.0300 7 7 3.5531 -0.8234 1.4449 8 6 3.9844 -1.5500 2.6416 9 1 4.0755 -0.8544 3.4758 10 6 5.3394 -2.2095 2.3771 11 6 5.7902 -2.9678 3.6272 12 6 4.7580 -4.0435 3.9711 13 6 3.4029 -3.3840 4.2356 14 6 2.9520 -2.6257 2.9849 15 1 2.8609 -3.3213 2.1507 16 7 1.6546 -1.9942 3.2382 17 6 0.4995 -2.7081 3.0610 18 1 0.5450 -3.7367 2.7351 19 6 -0.7296 -2.1115 3.3065 20 7 -0.7850 -0.8581 3.7043 21 14 -2.3050 -3.0876 3.0723 22 1 -1.9726 -4.4633 2.6225 23 1 -3.0434 -3.1519 4.3591 24 1 -3.1513 -2.4235 2.0486 25 6 3.9874 0.4251 -1.2482 26 6 5.5127 0.3049 -1.2479 27 6 6.1345 1.7030 -1.2482 28 6 5.6825 2.4625 0.0006 29 6 4.1572 2.5827 0.0003 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 2.9599 -1.2493 0.8064 36 1 5.2484 -2.9050 1.5429 37 1 6.0749 -1.4431 2.1325 38 1 6.7557 -3.4373 3.4389 39 1 5.8814 -2.2719 4.4611 40 1 4.6668 -4.7394 3.1371 41 1 5.0788 -4.5835 4.8619 42 1 3.4941 -2.6882 5.0695 43 1 2.6674 -4.1503 4.4801 44 1 1.6138 -1.0705 3.5313 45 1 -1.6439 -0.4411 3.8755 46 1 3.5441 -0.5706 -1.2482 47 1 3.6661 0.9660 -2.1384 48 1 5.8347 -0.2358 -2.1378 49 1 5.8343 -0.2355 -0.3576 50 1 5.8128 2.2435 -2.1384 51 1 7.2211 1.6173 -1.2484 52 1 6.1258 3.4582 0.0007 53 1 6.0041 1.9220 0.8909 54 1 3.8356 3.1232 -0.8899 55 1 3.8352 3.1234 0.8903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226656152.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:56 Heat of formation + Delta-G solvation = -120.765940 kcal Electronic energy + Delta-G solvation = -33353.276691 eV Core-core repulsion = 29388.222201 eV Total energy + Delta-G solvation = -3965.054490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86801 -39.85440 -38.51152 -37.69551 -35.74782 -35.00627 -33.12498 -32.91066 -31.63043 -30.41513 -29.16785 -27.93819 -26.01349 -25.59268 -24.49214 -23.50470 -22.78579 -22.32106 -21.50363 -21.08812 -19.96549 -19.00754 -17.67483 -17.33514 -17.09381 -16.92721 -16.53179 -16.30960 -15.78418 -15.60399 -15.35353 -15.31680 -14.92193 -14.80145 -14.68665 -14.56326 -14.33950 -14.04664 -13.63514 -13.52258 -13.35962 -13.06836 -12.95947 -12.88984 -12.86945 -12.82202 -12.67116 -12.19332 -12.16389 -12.07516 -12.00644 -11.99803 -11.89459 -11.64203 -11.51791 -11.37854 -11.09292 -11.01881 -10.96782 -10.87145 -10.54164 -10.24697 -9.70931 -8.89117 -7.82103 -5.09314 1.47141 1.50454 1.57763 1.81714 2.42713 2.60764 2.80259 3.50197 3.68446 3.69750 3.74796 3.86259 3.90019 4.06697 4.17293 4.24127 4.29163 4.32048 4.37077 4.39921 4.45517 4.48187 4.52192 4.55330 4.57446 4.62394 4.62917 4.67447 4.71712 4.72893 4.80462 4.94441 4.97091 5.04545 5.06911 5.09056 5.16292 5.21476 5.25844 5.28977 5.29900 5.33151 5.35077 5.42526 5.42725 5.49445 5.57185 5.62176 5.68297 5.87561 6.24901 6.35545 6.85839 7.43517 7.51227 8.16636 8.43134 9.40346 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.005148 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.065744 B = 5437.560152 C = 7395.018983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.068 4.068 5 C 0.525 3.475 6 O -0.585 6.585 7 N -0.693 5.693 8 C 0.148 3.852 9 H 0.046 0.954 10 C -0.112 4.112 11 C -0.109 4.109 12 C -0.109 4.109 13 C -0.127 4.127 14 C 0.175 3.825 15 H 0.050 0.950 16 N -0.723 5.723 17 C -0.220 4.220 18 H 0.071 0.929 19 C -0.060 4.060 20 N -0.960 5.960 21 Si 0.953 3.047 22 H -0.270 1.270 23 H -0.305 1.305 24 H -0.293 1.293 25 C -0.096 4.096 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.130 4.130 29 C -0.088 4.088 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.409 0.591 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.049 0.951 44 H 0.367 0.633 45 H 0.244 0.756 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.038 0.962 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.068 0.932 53 H 0.061 0.939 54 H 0.094 0.906 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.026 1.785 -12.872 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.071 4.071 5 C 0.312 3.688 6 O -0.466 6.466 7 N -0.342 5.342 8 C 0.042 3.958 9 H 0.064 0.936 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.168 4.168 14 C 0.066 3.934 15 H 0.068 0.932 16 N -0.361 5.361 17 C -0.352 4.352 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.612 5.612 21 Si 0.785 3.215 22 H -0.194 1.194 23 H -0.233 1.233 24 H -0.220 1.220 25 C -0.133 4.133 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.167 4.167 29 C -0.126 4.126 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.198 0.802 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.057 0.943 50 H 0.097 0.903 51 H 0.083 0.917 52 H 0.087 0.913 53 H 0.080 0.920 54 H 0.112 0.888 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.509 1.806 -12.375 18.409 hybrid contribution -2.055 0.122 0.661 2.162 sum 11.454 1.928 -11.714 16.496 Atomic orbital electron populations 1.22490 0.79930 1.02428 0.99203 1.87678 1.20520 1.27386 1.95328 1.22519 0.91553 0.85540 1.00794 1.20941 0.94018 0.97709 0.94450 1.20708 0.79242 0.81502 0.87305 1.90556 1.38822 1.68633 1.48616 1.46009 1.49172 1.14396 1.24666 1.21087 0.94363 0.92976 0.87381 0.93618 1.21777 0.94882 0.99183 0.99274 1.21467 0.99147 0.97428 0.96699 1.21508 0.93493 0.97651 1.02062 1.22098 0.97117 0.99087 0.98505 1.20608 0.84488 0.92660 0.95672 0.93169 1.42448 1.00517 1.12504 1.80670 1.19476 0.85258 0.95042 1.35444 0.91085 1.25219 0.99636 0.96869 1.03576 1.69844 1.23690 1.12833 1.54793 0.85368 0.81235 0.78550 0.76393 1.19441 1.23266 1.22048 1.21510 0.96160 1.00358 0.95288 1.21567 0.94685 0.97786 1.01708 1.21515 1.00150 0.95328 0.97935 1.21703 0.94610 1.00944 0.99476 1.21305 0.96345 0.92670 1.02280 0.96310 0.92098 0.90801 0.95569 0.89683 0.75287 0.90738 0.92624 0.89536 0.92985 0.91112 0.90887 0.94236 0.93265 0.80154 0.94660 0.91496 0.88804 0.89901 0.94271 0.90281 0.91665 0.91325 0.92040 0.88778 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.90 11.01 113.37 1.25 3.15 16 2 O -0.39 -13.05 7.53 -148.98 -1.12 -14.18 16 3 C 0.07 2.12 4.79 71.98 0.35 2.47 16 4 C -0.07 -1.86 0.52 -52.93 -0.03 -1.89 16 5 C 0.53 18.42 4.93 87.66 0.43 18.85 16 6 O -0.58 -23.85 13.32 -3.06 -0.04 -23.89 16 7 N -0.69 -24.47 4.44 -442.55 -1.97 -26.44 16 8 C 0.15 5.33 1.98 44.99 0.09 5.42 16 9 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 10 C -0.11 -3.22 5.49 30.59 0.17 -3.05 16 11 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 12 C -0.11 -2.86 5.92 30.60 0.18 -2.67 16 13 C -0.13 -4.51 5.51 30.61 0.17 -4.34 16 14 C 0.17 6.81 2.30 45.01 0.10 6.91 16 15 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 16 N -0.72 -35.33 4.95 -322.86 -1.60 -36.92 16 17 C -0.22 -11.61 9.93 84.04 0.83 -10.77 16 18 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 19 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 20 N -0.96 -56.70 13.06 21.65 0.28 -56.41 16 21 Si 0.95 44.77 29.55 68.60 2.03 46.80 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C -0.10 -2.08 4.49 30.59 0.14 -1.94 16 26 C -0.12 -2.45 5.70 30.60 0.17 -2.28 16 27 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 28 C -0.13 -3.10 5.63 30.59 0.17 -2.93 16 29 C -0.09 -2.16 4.37 30.59 0.13 -2.03 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 14.65 5.98 -92.71 -0.55 14.10 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.37 20.37 7.80 -92.71 -0.72 19.65 16 45 H 0.24 14.21 8.31 -92.70 -0.77 13.44 16 46 H 0.07 1.59 7.11 -2.39 -0.02 1.57 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.04 0.99 7.22 -2.39 -0.02 0.97 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.06 1.91 5.51 -2.39 -0.01 1.90 16 54 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 55 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -63.98 412.31 2.15 -61.84 By element: Atomic # 1 Polarization: 52.05 SS G_CDS: -0.42 Total: 51.62 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.99 Total: -2.43 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -3.28 Total: -119.77 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.16 Total: -38.06 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.98 2.15 -61.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226656152.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.930 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds