Wall clock time and date at job start Tue Mar 31 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42895 * 114.00413 * 2 1 4 4 C 1.53006 * 109.47372 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47374 * 184.47142 * 4 3 2 6 6 C 1.50702 * 110.43192 * 294.66019 * 5 4 3 7 7 O 1.21285 * 119.99604 * 127.22490 * 6 5 4 8 8 N 1.34774 * 120.00237 * 307.22331 * 6 5 4 9 9 C 1.46501 * 120.00139 * 174.58118 * 8 6 5 10 10 H 1.09004 * 109.46782 * 35.00739 * 9 8 6 11 11 C 1.52992 * 109.47528 * 275.00457 * 9 8 6 12 12 C 1.53000 * 109.47303 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47408 * 59.99645 * 12 11 9 14 14 C 1.53003 * 109.46870 * 300.00520 * 13 12 11 15 15 C 1.52999 * 109.47521 * 60.00114 * 14 13 12 16 16 H 1.08995 * 109.47329 * 59.99525 * 15 14 13 17 17 N 1.46497 * 109.46956 * 180.02562 * 15 14 13 18 18 C 1.36936 * 120.00165 * 274.99475 * 17 15 14 19 19 H 1.07999 * 119.99598 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00505 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99567 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47178 * 89.99792 * 22 20 18 24 24 H 1.48499 * 109.47045 * 209.99618 * 22 20 18 25 25 H 1.48497 * 109.47294 * 329.99648 * 22 20 18 26 26 C 1.54885 * 110.48611 * 171.97910 * 5 4 3 27 27 C 1.54898 * 102.74682 * 203.38108 * 26 5 4 28 28 C 1.54262 * 104.19744 * 37.93676 * 27 26 5 29 29 C 1.53880 * 106.59976 * 336.39802 * 28 27 26 30 30 H 1.09005 * 109.47243 * 300.00390 * 1 2 3 31 31 H 1.09000 * 109.47205 * 59.99898 * 1 2 3 32 32 H 1.09003 * 109.47895 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47399 * 60.00182 * 3 2 1 34 34 H 1.09003 * 109.47058 * 300.00160 * 3 2 1 35 35 H 1.09004 * 109.46853 * 64.46628 * 4 3 2 36 36 H 1.09003 * 109.46612 * 304.46988 * 4 3 2 37 37 H 0.97001 * 119.99727 * 354.59334 * 8 6 5 38 38 H 1.09004 * 109.47320 * 299.99953 * 11 9 8 39 39 H 1.08998 * 109.47108 * 59.99792 * 11 9 8 40 40 H 1.09006 * 109.46584 * 299.99577 * 12 11 9 41 41 H 1.09005 * 109.47224 * 180.02562 * 12 11 9 42 42 H 1.08993 * 109.47551 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.47187 * 59.99665 * 13 12 11 44 44 H 1.08998 * 109.46882 * 299.99168 * 14 13 12 45 45 H 1.09007 * 109.46950 * 179.97438 * 14 13 12 46 46 H 0.97006 * 120.00267 * 95.00241 * 17 15 14 47 47 H 0.97004 * 119.99819 * 180.02562 * 21 20 18 48 48 H 1.08998 * 110.75922 * 85.06462 * 26 5 4 49 49 H 1.08998 * 110.75453 * 321.68883 * 26 5 4 50 50 H 1.08999 * 110.47859 * 279.26363 * 27 26 5 51 51 H 1.08996 * 110.48694 * 156.62442 * 27 26 5 52 52 H 1.09004 * 110.03303 * 95.67679 * 28 27 26 53 53 H 1.08992 * 110.03855 * 217.10841 * 28 27 26 54 54 H 1.08998 * 110.03431 * 119.28178 * 29 28 27 55 55 H 1.09004 * 110.02609 * 240.71501 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1576 2.5778 0.1118 6 6 3.8406 3.3959 -1.1134 7 8 3.3421 4.4954 -0.9961 8 7 4.1110 2.9060 -2.3395 9 6 3.6956 3.6475 -3.5327 10 1 3.7749 4.7177 -3.3412 11 6 2.2459 3.2962 -3.8726 12 6 1.8124 4.0702 -5.1192 13 6 2.7173 3.6935 -6.2939 14 6 4.1671 4.0449 -5.9538 15 6 4.6007 3.2708 -4.7074 16 1 4.5214 2.2006 -4.8984 17 7 5.9887 3.6077 -4.3816 18 6 7.0167 2.9408 -4.9927 19 1 6.8043 2.1668 -5.7152 20 6 8.3319 3.2597 -4.6836 21 7 8.5907 4.2035 -3.8034 22 14 9.7342 2.3505 -5.5179 23 1 10.1152 3.0638 -6.7634 24 1 10.9021 2.2948 -4.6024 25 1 9.3003 0.9699 -5.8511 26 6 5.6894 2.4726 0.3155 27 6 6.0371 3.8204 0.9952 28 6 4.8500 4.0826 1.9448 29 6 3.6549 3.2924 1.3832 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8623 0.7144 -0.9282 36 1 3.8520 0.5758 0.8464 37 1 4.5805 2.0622 -2.4318 38 1 2.1667 2.2261 -4.0641 39 1 1.6013 3.5642 -3.0356 40 1 1.8916 5.1405 -4.9281 41 1 0.7793 3.8203 -5.3611 42 1 2.4088 4.2453 -7.1818 43 1 2.6381 2.6233 -6.4849 44 1 4.2464 5.1151 -5.7629 45 1 4.8120 3.7761 -6.7906 46 1 6.1795 4.3032 -3.7328 47 1 9.5098 4.4266 -3.5877 48 1 6.2010 2.3798 -0.6424 49 1 5.9356 1.6357 0.9689 50 1 6.1134 4.6139 0.2518 51 1 6.9655 3.7346 1.5597 52 1 5.0904 3.7324 2.9487 53 1 4.6169 5.1471 1.9662 54 1 3.3155 2.5588 2.1144 55 1 2.8419 3.9736 1.1319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230309760.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:52 Heat of formation + Delta-G solvation = -125.498007 kcal Electronic energy + Delta-G solvation = -32341.322549 eV Core-core repulsion = 28376.062862 eV Total energy + Delta-G solvation = -3965.259688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76644 -39.86681 -38.74988 -37.85588 -35.81247 -35.17959 -33.51635 -32.97074 -30.76711 -29.79075 -29.21210 -28.63107 -26.70009 -25.64161 -24.30206 -23.70367 -22.68367 -22.35955 -21.26719 -21.07871 -19.87277 -19.08043 -17.93035 -17.52721 -17.24718 -16.96793 -16.72670 -16.25903 -16.03352 -15.86614 -15.59997 -15.43141 -15.14838 -14.92106 -14.65529 -14.63825 -14.17515 -14.07548 -13.99516 -13.58895 -13.54015 -13.17681 -12.92786 -12.80704 -12.59458 -12.44174 -12.24451 -12.19690 -12.17364 -12.14531 -12.03747 -12.02278 -11.96339 -11.76531 -11.64871 -11.57460 -11.44805 -11.31523 -11.10006 -10.94734 -10.64005 -10.51913 -9.88383 -8.98171 -7.89800 -5.18711 1.48210 1.49029 1.57057 1.71033 2.28273 2.57335 2.73870 3.43060 3.47854 3.58713 3.67121 3.75756 3.82990 4.03992 4.09871 4.14028 4.17600 4.25464 4.30803 4.31806 4.42008 4.46856 4.49066 4.50905 4.52249 4.54773 4.57590 4.59078 4.68506 4.71327 4.78027 4.85957 4.90626 4.93616 4.98847 5.03211 5.04011 5.09263 5.10844 5.19277 5.22439 5.27396 5.28066 5.29748 5.33218 5.45540 5.48842 5.53303 5.58434 5.71234 6.20045 6.29299 6.65723 7.33604 7.36356 8.09778 8.34571 9.32872 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.004426 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.042888 B = 6324.507761 C = 7949.697615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.064 3.936 4 C -0.097 4.097 5 C -0.073 4.073 6 C 0.526 3.474 7 O -0.582 6.582 8 N -0.704 5.704 9 C 0.148 3.852 10 H 0.050 0.950 11 C -0.112 4.112 12 C -0.110 4.110 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.173 3.827 16 H 0.056 0.944 17 N -0.730 5.730 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.965 3.035 23 H -0.294 1.294 24 H -0.300 1.300 25 H -0.267 1.267 26 C -0.105 4.105 27 C -0.127 4.127 28 C -0.115 4.115 29 C -0.103 4.103 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.049 0.951 46 H 0.368 0.632 47 H 0.247 0.753 48 H 0.052 0.948 49 H 0.107 0.893 50 H 0.028 0.972 51 H 0.079 0.921 52 H 0.089 0.911 53 H 0.051 0.949 54 H 0.096 0.904 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 -7.883 8.527 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.012 4.012 4 C -0.134 4.134 5 C -0.076 4.076 6 C 0.314 3.686 7 O -0.463 6.463 8 N -0.353 5.353 9 C 0.043 3.957 10 H 0.068 0.932 11 C -0.152 4.152 12 C -0.148 4.148 13 C -0.147 4.147 14 C -0.169 4.169 15 C 0.064 3.936 16 H 0.074 0.926 17 N -0.369 5.369 18 C -0.363 4.363 19 H 0.095 0.905 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.221 1.221 24 H -0.227 1.227 25 H -0.192 1.192 26 C -0.143 4.143 27 C -0.165 4.165 28 C -0.152 4.152 29 C -0.141 4.141 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.199 0.801 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.125 0.875 50 H 0.047 0.953 51 H 0.097 0.903 52 H 0.108 0.892 53 H 0.070 0.930 54 H 0.115 0.885 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.865 -7.423 8.491 20.288 hybrid contribution 1.471 0.449 -0.564 1.638 sum -15.394 -6.973 7.927 18.666 Atomic orbital electron populations 1.22922 0.79702 1.03886 1.00609 1.87815 1.21269 1.28083 1.95543 1.22538 0.93894 0.84485 1.00326 1.21491 0.93123 0.94031 1.04788 1.21567 0.97841 0.95068 0.93116 1.20765 0.76594 0.86115 0.85157 1.90615 1.46586 1.21994 1.87075 1.45901 1.58555 1.25723 1.05114 1.21120 0.94559 0.95532 0.84530 0.93207 1.21789 0.93772 1.01322 0.98268 1.21473 0.99986 0.99561 0.93775 1.21508 0.93113 1.01986 0.98114 1.22094 0.96806 0.99508 0.98481 1.20649 0.83351 0.97522 0.92082 0.92634 1.42555 1.00405 1.44105 1.49826 1.19550 0.86368 1.13345 1.17055 0.90483 1.25431 0.99549 1.00422 1.00816 1.69844 1.18423 1.35242 1.38212 0.85260 0.79393 0.78675 0.77140 1.22117 1.22678 1.19180 1.22555 0.91543 0.98971 1.01202 1.22324 0.99379 0.96515 0.98268 1.22066 0.93931 0.99847 0.99384 1.22166 0.98405 0.99062 0.94429 0.93128 0.93953 0.88090 0.92068 0.94756 0.90900 0.87977 0.76039 0.90510 0.92610 0.92919 0.89419 0.90846 0.90993 0.94230 0.93219 0.80081 0.94399 0.92922 0.87485 0.95284 0.90259 0.89245 0.93044 0.88522 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.89 10.70 -148.98 -1.59 -10.49 16 3 C 0.06 1.39 5.50 71.98 0.40 1.78 16 4 C -0.10 -2.08 4.47 30.60 0.14 -1.94 16 5 C -0.07 -1.88 0.49 -51.86 -0.03 -1.91 16 6 C 0.53 17.67 5.42 87.66 0.48 18.15 16 7 O -0.58 -23.52 15.11 -3.04 -0.05 -23.56 16 8 N -0.70 -23.43 4.70 -442.53 -2.08 -25.52 16 9 C 0.15 5.12 2.02 44.99 0.09 5.21 16 10 H 0.05 2.07 7.51 -2.38 -0.02 2.05 16 11 C -0.11 -3.05 5.49 30.59 0.17 -2.88 16 12 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 13 C -0.11 -2.75 5.92 30.59 0.18 -2.56 16 14 C -0.13 -4.43 5.50 30.59 0.17 -4.26 16 15 C 0.17 6.54 2.29 44.99 0.10 6.64 16 16 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 17 N -0.73 -35.61 4.95 -322.95 -1.60 -37.21 16 18 C -0.23 -12.30 9.93 84.03 0.83 -11.47 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 22 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.11 -2.83 5.81 31.89 0.19 -2.65 16 27 C -0.13 -3.68 6.61 31.67 0.21 -3.47 16 28 C -0.11 -2.76 6.80 31.32 0.21 -2.54 16 29 C -0.10 -2.42 4.52 31.32 0.14 -2.28 16 30 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.21 6.76 -2.39 -0.02 1.20 16 34 H 0.03 0.84 7.59 -2.39 -0.02 0.82 16 35 H 0.07 1.63 7.23 -2.38 -0.02 1.62 16 36 H 0.10 1.83 8.07 -2.39 -0.02 1.81 16 37 H 0.40 13.05 7.76 -92.71 -0.72 12.33 16 38 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.37 20.32 7.80 -92.70 -0.72 19.60 16 47 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 49 H 0.11 2.24 8.00 -2.39 -0.02 2.22 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 52 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.10 1.70 7.42 -2.39 -0.02 1.69 16 55 H 0.06 1.71 6.95 -2.39 -0.02 1.69 16 Total: -1.00 -67.53 422.09 1.58 -65.95 By element: Atomic # 1 Polarization: 50.76 SS G_CDS: -0.59 Total: 50.18 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 5.17 Total: -8.44 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -3.40 Total: -121.10 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.64 Total: -34.05 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.53 1.58 -65.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230309760.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.549 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds