Wall clock time and date at job start Tue Mar 31 2020 22:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00029 * 2 1 4 4 C 1.53005 * 109.46758 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46926 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47106 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99821 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00322 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.62701 * 359.71532 * 9 7 6 11 11 C 1.53631 * 108.54079 * 126.36993 * 10 9 7 12 12 C 1.53048 * 109.24092 * 54.85842 * 11 10 9 13 13 C 1.52994 * 109.44981 * 178.49719 * 12 11 10 14 14 H 1.09005 * 109.87468 * 182.31260 * 13 12 11 15 15 C 1.54320 * 109.88180 * 61.29583 * 13 12 11 16 16 C 1.55163 * 102.94137 * 218.39127 * 15 13 12 17 17 C 1.54904 * 101.58246 * 35.50078 * 16 15 13 18 18 N 1.47027 * 109.88244 * 303.48606 * 13 12 11 19 19 C 1.36941 * 125.64846 * 298.33935 * 18 13 12 20 20 H 1.07993 * 119.99630 * 345.40697 * 19 18 13 21 21 C 1.38815 * 119.99835 * 165.40541 * 19 18 13 22 22 N 1.31615 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99658 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47257 * 60.00295 * 23 21 19 25 25 H 1.48501 * 109.46962 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47521 * 300.00060 * 23 21 19 27 27 C 1.53039 * 109.53519 * 298.51124 * 12 11 10 28 28 C 1.46921 * 120.63454 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46964 * 59.99557 * 1 2 3 30 30 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46945 * 300.00054 * 1 2 3 32 32 H 1.08990 * 109.46995 * 299.99738 * 3 2 1 33 33 H 1.08997 * 109.46506 * 60.00149 * 3 2 1 34 34 H 1.08991 * 109.47141 * 300.00258 * 4 3 2 35 35 H 1.09004 * 109.47096 * 60.00506 * 4 3 2 36 36 H 1.09004 * 109.47245 * 300.00284 * 5 4 3 37 37 H 1.09004 * 109.46913 * 60.00280 * 5 4 3 38 38 H 1.08995 * 109.47559 * 300.00313 * 6 5 4 39 39 H 1.09004 * 109.47039 * 60.00367 * 6 5 4 40 40 H 1.08999 * 109.59165 * 246.19950 * 10 9 7 41 41 H 1.08997 * 109.58798 * 6.63469 * 10 9 7 42 42 H 1.08996 * 109.63508 * 294.86631 * 11 10 9 43 43 H 1.08996 * 109.43420 * 174.72099 * 11 10 9 44 44 H 1.08997 * 109.46017 * 58.52627 * 12 11 10 45 45 H 1.09004 * 110.72205 * 336.74999 * 15 13 12 46 46 H 1.08996 * 110.72237 * 99.84937 * 15 13 12 47 47 H 1.09001 * 111.00309 * 153.58129 * 16 15 13 48 48 H 1.09005 * 110.99918 * 277.42815 * 16 15 13 49 49 H 1.08996 * 110.36429 * 81.82976 * 17 16 15 50 50 H 1.08996 * 110.37018 * 204.04277 * 17 16 15 51 51 H 0.96998 * 119.99915 * 179.97438 * 22 21 19 52 52 H 1.08998 * 109.49810 * 301.41225 * 27 12 11 53 53 H 1.08996 * 109.49872 * 181.31368 * 27 12 11 54 54 H 1.09005 * 109.58818 * 353.37325 * 28 9 7 55 55 H 1.09010 * 109.58925 * 113.65225 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1579 2.5823 0.0013 6 6 5.6831 2.4614 0.0026 7 6 6.2961 3.8381 0.0039 8 8 5.5832 4.8193 0.0033 9 7 7.6365 3.9790 0.0046 10 6 8.5130 2.7999 0.0105 11 6 9.4988 2.9182 -1.1619 12 6 10.2409 4.2531 -1.0641 13 6 11.2509 4.3596 -2.2084 14 1 11.8123 5.2899 -2.1218 15 6 10.5147 4.3150 -3.5640 16 6 11.4680 3.4696 -4.4495 17 6 12.0204 2.4480 -3.4245 18 7 12.1697 3.2124 -2.1727 19 6 13.0232 2.9050 -1.1468 20 1 13.2360 3.6386 -0.3834 21 6 13.6146 1.6505 -1.0882 22 7 13.3555 0.7567 -2.0189 23 14 14.7792 1.2316 0.3108 24 1 14.0611 1.3505 1.6052 25 1 15.2722 -0.1593 0.1448 26 1 15.9299 2.1703 0.2951 27 6 9.2376 5.4047 -1.1608 28 6 8.2488 5.3145 0.0053 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 3.8568 0.6438 0.8908 35 1 3.8575 0.6435 -0.8892 36 1 3.8367 3.1235 -0.8887 37 1 3.8359 3.1229 0.8913 38 1 6.0040 1.9204 0.8927 39 1 6.0054 1.9206 -0.8872 40 1 9.0627 2.7578 0.9508 41 1 7.9126 1.8976 -0.1050 42 1 8.9538 2.8731 -2.1047 43 1 10.2164 2.0990 -1.1164 44 1 10.7656 4.3079 -0.1103 45 1 9.5470 3.8239 -3.4614 46 1 10.3949 5.3190 -3.9710 47 1 10.9187 2.9667 -5.2453 48 1 12.2695 4.0849 -4.8586 49 1 11.3144 1.6291 -3.2870 50 1 12.9859 2.0642 -3.7539 51 1 13.7690 -0.1198 -1.9781 52 1 8.6950 5.3362 -2.1036 53 1 9.7691 6.3551 -1.1145 54 1 7.4740 6.0719 -0.1135 55 1 8.7752 5.4747 0.9463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230522622.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:18 Heat of formation + Delta-G solvation = -94.366550 kcal Electronic energy + Delta-G solvation = -30653.408345 eV Core-core repulsion = 26689.498619 eV Total energy + Delta-G solvation = -3963.909726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34921 -39.90304 -38.92913 -37.69941 -35.72968 -34.70935 -33.73561 -32.16819 -31.13921 -30.76700 -29.06232 -27.43638 -26.51627 -25.58778 -24.63482 -23.92506 -22.60777 -22.08108 -21.68202 -20.48490 -19.44772 -18.59759 -17.93667 -17.33873 -17.24708 -16.98687 -16.70738 -16.57953 -16.29510 -15.84347 -15.69514 -15.40260 -15.28355 -14.96554 -14.46527 -14.29566 -13.98806 -13.85459 -13.58556 -13.53434 -13.45608 -13.17087 -13.00172 -12.80021 -12.73651 -12.62741 -12.56941 -12.43305 -12.31828 -12.09368 -12.03321 -11.88409 -11.80399 -11.74464 -11.59645 -11.47442 -11.21075 -11.13716 -10.94444 -10.70531 -10.61583 -10.57101 -9.61034 -8.68284 -7.78106 -5.12419 1.49035 1.49618 1.55877 1.64728 2.04768 2.54506 2.82661 3.40205 3.57317 3.69913 3.84343 3.94360 3.96962 3.99372 4.18578 4.20946 4.26564 4.27279 4.31008 4.35012 4.36357 4.40985 4.44956 4.53137 4.54557 4.56284 4.65463 4.73610 4.76612 4.81239 4.81971 4.86016 4.86485 4.91942 4.96912 4.99154 5.09497 5.11906 5.13900 5.21864 5.28724 5.29340 5.37988 5.42879 5.56509 5.59061 5.67371 5.73521 5.77374 5.86364 6.23611 6.33292 6.45936 7.18562 7.19991 7.89156 8.57416 9.32698 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.002423 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.895796 B =11550.929309 C =12214.762264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.137 4.137 7 C 0.511 3.489 8 O -0.586 6.586 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.107 4.107 12 C -0.084 4.084 13 C 0.158 3.842 14 H 0.025 0.975 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.181 3.819 18 N -0.607 5.607 19 C -0.223 4.223 20 H 0.071 0.929 21 C -0.058 4.058 22 N -0.945 5.945 23 Si 0.963 3.037 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.284 1.284 27 C -0.115 4.115 28 C 0.113 3.887 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.000 1.000 50 H 0.027 0.973 51 H 0.244 0.756 52 H 0.067 0.933 53 H 0.082 0.918 54 H 0.083 0.917 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 3.431 2.466 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.129 4.129 6 C -0.176 4.176 7 C 0.301 3.699 8 O -0.468 6.468 9 N -0.339 5.339 10 C -0.010 4.010 11 C -0.145 4.145 12 C -0.104 4.104 13 C 0.052 3.948 14 H 0.043 0.957 15 C -0.152 4.152 16 C -0.178 4.178 17 C 0.056 3.944 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.089 0.911 21 C -0.251 4.251 22 N -0.593 5.593 23 Si 0.793 3.207 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.211 1.211 27 C -0.154 4.154 28 C -0.010 4.010 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.018 0.982 50 H 0.045 0.955 51 H 0.054 0.946 52 H 0.086 0.914 53 H 0.100 0.900 54 H 0.101 0.899 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.456 3.607 2.532 20.926 hybrid contribution 1.063 -0.325 0.698 1.313 sum -19.393 3.282 3.230 19.932 Atomic orbital electron populations 1.22916 0.79663 1.03755 1.00784 1.87830 1.21393 1.29026 1.95608 1.22611 0.94238 0.84204 1.00803 1.21466 0.93004 0.96907 1.03715 1.21123 0.92729 0.96196 1.02900 1.21737 0.96607 0.93168 1.06099 1.21221 0.81510 0.92487 0.74670 1.90641 1.61253 1.42341 1.52521 1.48271 1.05589 1.07918 1.72159 1.21935 0.92403 0.87729 0.98914 1.21747 0.97052 0.98208 0.97539 1.21398 0.95396 0.94582 0.99064 1.21137 0.89562 0.89889 0.94233 0.95693 1.22600 0.98058 1.00292 0.94230 1.22903 0.98863 0.98394 0.97685 1.21137 0.97059 0.91424 0.84755 1.44654 1.43156 1.28497 1.16766 1.19125 1.17989 0.95946 1.02172 0.91101 1.25504 1.02947 0.96105 1.00567 1.70117 1.48075 1.05574 1.35568 0.85385 0.79085 0.76349 0.79904 1.20360 1.22492 1.21050 1.21861 0.96308 0.98833 0.98379 1.21570 0.96218 0.84323 0.98850 0.93313 0.88608 0.93244 0.92812 0.92705 0.90674 0.90854 0.91966 0.91800 0.87002 0.87315 0.91429 0.87781 0.92156 0.92589 0.93426 0.90856 0.89960 0.90417 0.92317 0.98229 0.95472 0.94636 0.91443 0.89994 0.89867 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.92 10.70 -148.98 -1.59 -9.51 16 3 C 0.06 0.93 5.94 71.98 0.43 1.35 16 4 C -0.11 -1.78 5.58 30.60 0.17 -1.61 16 5 C -0.09 -1.62 4.50 30.59 0.14 -1.48 16 6 C -0.14 -2.49 4.05 29.85 0.12 -2.37 16 7 C 0.51 13.09 7.70 87.66 0.67 13.76 16 8 O -0.59 -18.82 15.40 -3.05 -0.05 -18.86 16 9 N -0.61 -15.39 2.97 -818.13 -2.43 -17.81 16 10 C 0.11 2.84 6.37 86.51 0.55 3.39 16 11 C -0.11 -3.42 4.95 30.82 0.15 -3.27 16 12 C -0.08 -2.71 1.91 -10.77 -0.02 -2.73 16 13 C 0.16 5.88 2.97 45.34 0.13 6.01 16 14 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 15 C -0.11 -3.57 5.20 31.78 0.17 -3.40 16 16 C -0.14 -4.95 7.08 31.99 0.23 -4.72 16 17 C 0.18 8.50 5.41 86.85 0.47 8.97 16 18 N -0.61 -28.67 2.21 -668.28 -1.48 -30.15 16 19 C -0.22 -11.73 9.87 84.03 0.83 -10.90 16 20 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 21 C -0.06 -3.14 5.47 84.86 0.46 -2.68 16 22 N -0.94 -54.52 10.57 21.65 0.23 -54.29 16 23 Si 0.96 44.48 29.55 68.60 2.03 46.51 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C -0.12 -2.96 5.07 30.66 0.16 -2.81 16 28 C 0.11 2.86 6.43 86.35 0.55 3.41 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 37 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.11 1.66 7.93 -2.39 -0.02 1.64 16 39 H 0.11 1.74 7.70 -2.39 -0.02 1.73 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 2.12 5.93 -2.39 -0.01 2.10 16 42 H 0.06 1.87 6.20 -2.39 -0.01 1.86 16 43 H 0.06 2.31 7.49 -2.39 -0.02 2.29 16 44 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 45 H 0.07 2.19 5.50 -2.39 -0.01 2.18 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 49 H 0.00 -0.01 8.06 -2.39 -0.02 -0.03 16 50 H 0.03 1.47 6.93 -2.39 -0.02 1.45 16 51 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 52 H 0.07 1.72 7.02 -2.39 -0.02 1.71 16 53 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 54 H 0.08 2.19 7.01 -2.38 -0.02 2.18 16 55 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -66.31 416.41 4.00 -62.31 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.83 Total: 19.33 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.46 Total: 2.48 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.68 Total: -102.26 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -1.64 Total: -28.37 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -66.31 4.00 -62.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230522622.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.056 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds