Wall clock time and date at job start Tue Mar 31 2020 23:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00087 * 2 1 4 4 O 1.20821 * 120.00133 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99911 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.37183 * 39.10212 * 5 3 2 7 7 C 1.54382 * 110.51028 * 276.68531 * 5 3 2 8 8 C 1.54262 * 105.06060 * 217.31630 * 7 5 3 9 9 H 1.09004 * 110.40736 * 118.93630 * 8 7 5 10 10 N 1.46896 * 110.32433 * 241.10602 * 8 7 5 11 11 C 1.46900 * 111.00041 * 296.10956 * 10 8 7 12 12 C 1.50697 * 109.47463 * 158.66598 * 11 10 8 13 13 H 1.08009 * 119.99447 * 354.52587 * 12 11 10 14 14 C 1.37870 * 120.00197 * 174.52604 * 12 11 10 15 15 N 1.31524 * 119.99925 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00088 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47076 * 89.99982 * 16 14 12 18 18 H 1.48500 * 109.47062 * 209.99945 * 16 14 12 19 19 H 1.48498 * 109.47115 * 329.99837 * 16 14 12 20 20 C 1.46904 * 110.99747 * 172.16092 * 10 8 7 21 21 C 1.53007 * 109.46937 * 190.00090 * 20 10 8 22 22 C 1.53002 * 109.43318 * 164.03710 * 21 20 10 23 23 C 1.52993 * 109.48198 * 75.95353 * 22 21 20 24 24 C 1.52988 * 109.50057 * 247.06878 * 23 22 21 25 25 C 1.53014 * 109.46156 * 44.01113 * 24 23 22 26 26 C 1.53008 * 109.46623 * 75.94765 * 25 24 23 27 27 C 1.52982 * 109.47451 * 69.99126 * 20 10 8 28 28 C 1.54382 * 105.05964 * 0.02562 * 8 7 5 29 29 N 1.48554 * 110.41247 * 161.45347 * 5 3 2 30 30 H 1.08999 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46729 * 300.00143 * 1 2 3 32 32 H 1.09005 * 109.46936 * 60.00168 * 1 2 3 33 33 H 1.08998 * 110.32538 * 98.42658 * 7 5 3 34 34 H 1.08994 * 110.32402 * 336.21372 * 7 5 3 35 35 H 1.09006 * 109.47115 * 278.66864 * 11 10 8 36 36 H 1.09004 * 109.47230 * 38.66134 * 11 10 8 37 37 H 0.96997 * 120.00000 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47053 * 309.99639 * 20 10 8 39 39 H 1.09000 * 109.47828 * 44.04720 * 21 20 10 40 40 H 1.08999 * 109.48059 * 284.02769 * 21 20 10 41 41 H 1.08995 * 109.47253 * 315.94842 * 22 21 20 42 42 H 1.08998 * 109.46891 * 195.95497 * 22 21 20 43 43 H 1.08998 * 109.46528 * 127.05483 * 23 22 21 44 44 H 1.09000 * 109.45757 * 7.07087 * 23 22 21 45 45 H 1.08996 * 109.47468 * 164.01279 * 24 23 22 46 46 H 1.09007 * 109.47387 * 284.01431 * 24 23 22 47 47 H 1.09002 * 109.46760 * 195.94410 * 25 24 23 48 48 H 1.08992 * 109.47370 * 315.94250 * 25 24 23 49 49 H 1.09003 * 109.47656 * 164.04814 * 26 25 24 50 50 H 1.09006 * 109.47630 * 44.04391 * 26 25 24 51 51 H 1.08996 * 109.46490 * 352.95687 * 27 20 10 52 52 H 1.09005 * 109.46353 * 112.93250 * 27 20 10 53 53 H 1.09002 * 110.41417 * 142.63086 * 28 8 7 54 54 H 1.09006 * 110.40761 * 265.07235 * 28 8 7 55 55 H 1.00900 * 111.00010 * 38.82121 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9865 0.5029 -0.6454 7 6 4.1159 1.1347 1.4353 8 6 5.3171 2.1004 1.5007 9 1 5.1491 2.8652 2.2591 10 7 6.5523 1.3594 1.7893 11 6 6.4921 0.7323 3.1163 12 6 7.4784 -0.4053 3.1796 13 1 8.0249 -0.6960 2.2944 14 6 7.6832 -1.0750 4.3672 15 7 8.5436 -2.0682 4.4222 16 14 6.7385 -0.5719 5.8981 17 1 5.4694 -1.3396 5.9713 18 1 7.5595 -0.8567 7.1023 19 1 6.4356 0.8806 5.8377 20 6 7.7288 2.2313 1.6720 21 6 9.0005 1.3826 1.7314 22 6 10.1854 2.2045 1.2201 23 6 10.6117 3.2076 2.2937 24 6 10.3204 4.6291 1.8089 25 6 8.9324 4.6743 1.1666 26 6 7.8632 4.6559 2.2610 27 6 7.7337 3.2389 2.8231 28 6 5.3919 2.7432 0.0991 29 7 4.0146 2.6201 -0.4433 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.4429 0.1110 1.6173 34 1 3.3566 1.4252 2.1613 35 1 6.7399 1.4708 3.8788 36 1 5.4862 0.3513 3.2930 37 1 8.6874 -2.5396 5.2576 38 1 7.6922 2.7650 0.7223 39 1 8.8761 0.4973 1.1078 40 1 9.1867 1.0784 2.7614 41 1 9.8929 2.7408 0.3174 42 1 11.0183 1.5390 0.9935 43 1 11.6792 3.1012 2.4868 44 1 10.0556 3.0157 3.2113 45 1 10.3517 5.3153 2.6552 46 1 11.0703 4.9235 1.0746 47 1 8.8340 5.5864 0.5779 48 1 8.8036 3.8078 0.5182 49 1 6.9074 4.9689 1.8408 50 1 8.1498 5.3392 3.0606 51 1 6.8029 3.1542 3.3839 52 1 8.5757 3.0317 3.4836 53 1 5.6781 3.7921 0.1766 54 1 6.0976 2.2011 -0.5305 55 1 3.4144 3.3414 -0.0723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246770011.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:48 Heat of formation + Delta-G solvation = -80.933236 kcal Electronic energy + Delta-G solvation = -32529.132483 eV Core-core repulsion = 28565.805269 eV Total energy + Delta-G solvation = -3963.327214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92371 -41.11221 -39.25627 -37.61756 -36.70427 -34.54080 -33.64355 -32.33221 -31.17086 -30.36479 -28.77507 -27.86265 -27.54136 -25.74794 -24.57359 -23.18151 -22.52764 -22.11983 -21.42034 -20.48419 -19.65981 -18.99657 -18.72130 -18.22201 -17.69122 -17.31017 -16.46848 -16.40518 -15.94427 -15.81794 -15.41100 -15.15537 -14.93975 -14.76747 -14.67570 -14.49646 -14.28170 -14.05461 -13.94917 -13.78423 -13.43745 -13.26160 -13.04045 -13.00676 -12.77629 -12.63284 -12.41708 -12.31969 -12.08022 -11.99519 -11.92464 -11.90720 -11.85647 -11.69101 -11.59201 -11.57013 -11.43940 -11.31722 -10.84673 -10.75613 -10.55383 -10.46855 -9.87456 -8.85304 -8.17309 -6.13065 0.98800 1.30721 1.33748 1.40380 1.59540 2.37038 3.02020 3.15779 3.25823 3.53212 3.73242 3.80023 3.87762 4.03862 4.07674 4.18221 4.26031 4.28170 4.28975 4.30125 4.32841 4.37254 4.42632 4.46997 4.52735 4.60515 4.62382 4.67116 4.83129 4.87628 4.90215 4.97784 4.99953 5.04102 5.07706 5.10501 5.17383 5.20776 5.22933 5.24111 5.26665 5.36771 5.40292 5.41339 5.56178 5.62497 5.66374 5.67739 5.75694 5.92301 6.15636 6.20195 6.56414 6.58989 6.77029 6.93525 7.45837 8.98303 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004592 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.896588 B = 6096.738217 C = 8349.976692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.526 6.526 5 C 0.087 3.913 6 H 0.130 0.870 7 C -0.134 4.134 8 C 0.052 3.948 9 H 0.042 0.958 10 N -0.520 5.520 11 C 0.161 3.839 12 C -0.480 4.480 13 H 0.057 0.943 14 C 0.012 3.988 15 N -0.948 5.948 16 Si 0.921 3.079 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.256 1.256 20 C 0.098 3.902 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.153 4.153 28 C 0.059 3.941 29 N -0.644 5.644 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.064 0.936 35 H -0.002 1.002 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.103 0.897 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.065 0.935 50 H 0.060 0.940 51 H 0.041 0.959 52 H 0.058 0.942 53 H 0.098 0.902 54 H 0.092 0.908 55 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 13.235 -8.824 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.415 6.415 5 C -0.024 4.024 6 H 0.148 0.852 7 C -0.173 4.173 8 C -0.059 4.059 9 H 0.060 0.940 10 N -0.243 5.243 11 C 0.034 3.966 12 C -0.519 4.519 13 H 0.075 0.925 14 C -0.184 4.184 15 N -0.590 5.590 16 Si 0.747 3.253 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.180 1.180 20 C -0.009 4.009 21 C -0.131 4.131 22 C -0.157 4.157 23 C -0.166 4.166 24 C -0.147 4.147 25 C -0.173 4.173 26 C -0.145 4.145 27 C -0.192 4.192 28 C -0.071 4.071 29 N -0.275 5.275 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.015 0.985 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.060 0.940 52 H 0.076 0.924 53 H 0.116 0.884 54 H 0.111 0.889 55 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.275 12.866 -9.785 17.726 hybrid contribution -0.677 0.047 3.066 3.140 sum -7.951 12.913 -6.719 16.586 Atomic orbital electron populations 1.23592 0.74432 1.05819 1.02708 1.86532 1.25337 1.32573 1.83362 1.23718 0.91980 0.81454 0.71095 1.90618 1.67392 1.36967 1.46568 1.22280 0.86185 0.96399 0.97517 0.85187 1.22819 0.96975 1.02540 0.94987 1.22951 0.90304 0.94065 0.98550 0.94011 1.62333 1.01194 1.30707 1.30088 1.20089 0.95825 0.93534 0.87122 1.21350 1.21240 1.13257 0.96046 0.92478 1.25566 0.96262 0.95261 1.01333 1.70026 1.37643 1.24035 1.27326 0.86115 0.79175 0.79683 0.80358 1.19860 1.21595 1.18014 1.21914 0.89710 0.91141 0.98180 1.21693 0.93762 0.96843 1.00756 1.21798 0.97221 0.97477 0.99225 1.21838 1.00311 0.95665 0.98772 1.21570 0.97259 0.95503 1.00387 1.22041 0.94063 1.03084 0.98072 1.21561 0.99366 0.94946 0.98588 1.22483 1.00733 0.96737 0.99249 1.23145 0.90477 1.01635 0.91795 1.63494 1.04217 1.01713 1.58028 0.85160 0.91951 0.91376 0.89720 0.91775 0.98480 0.96532 0.93066 0.87995 0.94293 0.93561 0.89688 0.93310 0.92627 0.92807 0.92108 0.91133 0.90631 0.89967 0.91667 0.92128 0.94037 0.92373 0.88390 0.88929 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.88 10.57 -51.41 -0.54 -9.42 16 3 C 0.47 12.63 7.13 71.24 0.51 13.14 16 4 O -0.53 -15.60 15.62 21.98 0.34 -15.26 16 5 C 0.09 2.26 3.75 44.32 0.17 2.43 16 6 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 7 C -0.13 -3.93 5.40 31.49 0.17 -3.76 16 8 C 0.05 1.52 2.45 45.81 0.11 1.63 16 9 H 0.04 1.24 6.97 -2.38 -0.02 1.22 16 10 N -0.52 -18.72 4.23 -845.20 -3.58 -22.30 16 11 C 0.16 7.15 3.22 85.56 0.28 7.43 16 12 C -0.48 -25.75 7.31 25.60 0.19 -25.57 16 13 H 0.06 3.39 6.11 -2.91 -0.02 3.38 16 14 C 0.01 0.68 5.47 84.65 0.46 1.14 16 15 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 16 Si 0.92 43.69 27.58 68.60 1.89 45.58 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 19 H -0.26 -11.46 6.39 99.48 0.64 -10.82 16 20 C 0.10 3.12 1.53 44.91 0.07 3.19 16 21 C -0.09 -3.43 3.39 30.60 0.10 -3.33 16 22 C -0.12 -3.44 5.47 30.59 0.17 -3.27 16 23 C -0.13 -3.39 5.48 30.59 0.17 -3.23 16 24 C -0.11 -2.24 5.71 30.59 0.17 -2.06 16 25 C -0.14 -2.65 5.33 30.60 0.16 -2.48 16 26 C -0.11 -2.37 5.71 30.59 0.17 -2.19 16 27 C -0.15 -4.64 3.77 30.58 0.12 -4.52 16 28 C 0.06 1.39 5.67 86.46 0.49 1.88 16 29 N -0.64 -15.52 7.35 -482.84 -3.55 -19.07 16 30 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.07 1.09 8.13 -2.38 -0.02 1.07 16 33 H 0.08 2.90 6.96 -2.39 -0.02 2.88 16 34 H 0.06 1.84 7.86 -2.39 -0.02 1.83 16 35 H 0.00 -0.11 4.36 -2.38 -0.01 -0.12 16 36 H 0.02 0.75 6.04 -2.38 -0.01 0.73 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.10 2.73 3.76 -2.39 -0.01 2.72 16 39 H 0.04 1.65 7.00 -2.39 -0.02 1.64 16 40 H 0.05 2.11 5.84 -2.39 -0.01 2.09 16 41 H 0.08 2.06 5.47 -2.39 -0.01 2.04 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.67 4.69 -2.39 -0.01 1.66 16 45 H 0.06 1.19 7.82 -2.39 -0.02 1.17 16 46 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.72 2.83 -2.39 -0.01 1.71 16 49 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 50 H 0.06 1.29 7.82 -2.38 -0.02 1.27 16 51 H 0.04 1.39 5.21 -2.39 -0.01 1.37 16 52 H 0.06 1.98 4.69 -2.38 -0.01 1.97 16 53 H 0.10 1.91 8.07 -2.39 -0.02 1.89 16 54 H 0.09 2.32 7.59 -2.38 -0.02 2.30 16 55 H 0.35 8.30 7.79 -89.69 -0.70 7.60 16 Total: -1.00 -64.55 385.65 -0.29 -64.84 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.14 Total: 31.16 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.71 Total: -17.92 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -6.83 Total: -98.98 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.20 Total: -24.68 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.89 Total: 45.58 kcal Total: -64.55 -0.29 -64.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246770011.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.093 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds