Wall clock time and date at job start Tue Mar 31 2020 23:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99663 * 2 1 4 4 O 1.20821 * 120.00278 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99735 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.41864 * 39.14061 * 5 3 2 7 7 C 1.54906 * 110.37320 * 276.82806 * 5 3 2 8 8 C 1.55138 * 101.65261 * 204.09844 * 7 5 3 9 9 H 1.08995 * 110.85790 * 277.20348 * 8 7 5 10 10 N 1.46900 * 110.70430 * 154.03703 * 8 7 5 11 11 C 1.46905 * 111.00029 * 61.84957 * 10 8 7 12 12 C 1.50696 * 109.46949 * 199.83676 * 11 10 8 13 13 H 1.08000 * 120.00239 * 5.16909 * 12 11 10 14 14 C 1.37876 * 119.99962 * 185.16766 * 12 11 10 15 15 N 1.31523 * 119.99813 * 359.72576 * 14 12 11 16 16 Si 1.86803 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46955 * 60.00091 * 16 14 12 18 18 H 1.48505 * 109.47069 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46861 * 299.99669 * 16 14 12 20 20 C 1.46902 * 111.00153 * 185.80662 * 10 8 7 21 21 C 1.53011 * 109.46711 * 289.06874 * 20 10 8 22 22 C 1.52997 * 109.45743 * 164.04466 * 21 20 10 23 23 C 1.52981 * 109.50808 * 315.98841 * 22 21 20 24 24 C 1.53007 * 109.47113 * 112.93769 * 23 22 21 25 25 C 1.53005 * 109.43166 * 284.03948 * 24 23 22 26 26 C 1.52991 * 109.48383 * 75.95807 * 25 24 23 27 27 C 1.52993 * 109.50564 * 247.06830 * 26 25 24 28 28 C 1.54313 * 103.01792 * 35.65859 * 8 7 5 29 29 N 1.47443 * 107.23412 * 337.71108 * 28 8 7 30 30 H 1.09004 * 109.47364 * 299.99493 * 1 2 3 31 31 H 1.09002 * 109.47923 * 59.99708 * 1 2 3 32 32 H 1.09003 * 109.47403 * 180.02562 * 1 2 3 33 33 H 1.09005 * 110.98505 * 86.00803 * 7 5 3 34 34 H 1.09002 * 110.99050 * 322.19819 * 7 5 3 35 35 H 1.09006 * 109.46800 * 79.83826 * 11 10 8 36 36 H 1.08995 * 109.46889 * 319.83719 * 11 10 8 37 37 H 0.97003 * 120.00170 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.46733 * 49.06582 * 20 10 8 39 39 H 1.09000 * 109.47551 * 284.03803 * 21 20 10 40 40 H 1.09000 * 109.47386 * 44.05338 * 21 20 10 41 41 H 1.09000 * 109.46195 * 195.97539 * 22 21 20 42 42 H 1.08996 * 109.45907 * 75.99674 * 22 21 20 43 43 H 1.08997 * 109.47426 * 352.93370 * 23 22 21 44 44 H 1.09003 * 109.46925 * 232.93463 * 23 22 21 45 45 H 1.08995 * 109.47924 * 164.04900 * 24 23 22 46 46 H 1.09004 * 109.48560 * 44.02789 * 24 23 22 47 47 H 1.08994 * 109.46654 * 315.95994 * 25 24 23 48 48 H 1.08990 * 109.47034 * 195.96235 * 25 24 23 49 49 H 1.09002 * 109.46631 * 127.05322 * 26 25 24 50 50 H 1.09001 * 109.46687 * 7.08017 * 26 25 24 51 51 H 1.09002 * 109.46877 * 284.01213 * 27 26 25 52 52 H 1.09001 * 109.47179 * 164.01344 * 27 26 25 53 53 H 1.08994 * 109.89425 * 97.11713 * 28 8 7 54 54 H 1.08999 * 109.88933 * 218.14814 * 28 8 7 55 55 H 1.00898 * 111.00717 * 236.74540 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9872 0.5038 -0.6457 7 6 4.1144 1.1305 1.4410 8 6 5.4883 1.8419 1.3266 9 1 6.2424 1.1668 0.9221 10 7 5.9111 2.3678 2.6315 11 6 6.0811 1.2823 3.6066 12 6 6.0302 1.8484 5.0023 13 1 5.8030 2.8934 5.1533 14 6 6.2736 1.0322 6.0865 15 7 6.5448 -0.2416 5.9030 16 14 6.2098 1.7336 7.8167 17 1 4.8553 2.2833 8.0783 18 1 6.5052 0.6587 8.7978 19 1 7.2175 2.8162 7.9493 20 6 7.1416 3.1603 2.5060 21 6 8.3196 2.2298 2.2098 22 6 9.5010 3.0522 1.6915 23 6 9.0021 4.0744 0.6685 24 6 9.1737 5.4862 1.2328 25 6 8.0838 5.7548 2.2725 26 6 8.4248 5.0207 3.5707 27 6 7.4006 3.9106 3.8141 28 6 5.2022 2.9940 0.3408 29 7 4.0113 2.6142 -0.4412 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 4.2391 0.0810 1.7079 34 1 3.4693 1.6398 2.1569 35 1 7.0440 0.7973 3.4461 36 1 5.2813 0.5526 3.4811 37 1 6.7157 -0.8159 6.6658 38 1 7.0309 3.8768 1.6920 39 1 8.6110 1.7106 3.1228 40 1 8.0256 1.5005 1.4550 41 1 10.2256 2.3891 1.2189 42 1 9.9741 3.5728 2.5241 43 1 7.9483 3.8930 0.4577 44 1 9.5785 3.9785 -0.2517 45 1 9.0922 6.2131 0.4247 46 1 10.1535 5.5734 1.7027 47 1 7.1256 5.3983 1.8946 48 1 8.0223 6.8256 2.4660 49 1 8.4023 5.7246 4.4027 50 1 9.4208 4.5850 3.4907 51 1 6.4689 4.3481 4.1728 52 1 7.7873 3.2168 4.5605 53 1 5.0059 3.9136 0.8919 54 1 6.0552 3.1346 -0.3230 55 1 4.2106 2.6216 -1.4303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246770020.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:53 Heat of formation + Delta-G solvation = -84.496036 kcal Electronic energy + Delta-G solvation = -32498.305806 eV Core-core repulsion = 28534.824097 eV Total energy + Delta-G solvation = -3963.481709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71731 -41.04129 -39.15237 -37.43865 -36.68867 -34.53000 -33.60998 -32.50149 -31.24358 -30.15807 -28.81073 -27.87864 -26.87113 -26.10620 -24.49022 -23.47366 -22.55186 -21.82105 -21.27873 -20.97419 -19.47510 -18.84731 -18.39620 -17.91834 -17.52307 -17.30809 -16.79869 -16.72561 -16.17994 -15.47641 -15.04278 -15.01197 -14.88531 -14.78640 -14.53406 -14.31008 -14.25551 -14.02639 -13.76473 -13.68621 -13.54669 -13.20332 -13.05204 -12.85188 -12.78890 -12.73979 -12.57160 -12.38449 -12.31869 -12.22362 -12.01371 -11.77958 -11.74000 -11.64883 -11.53063 -11.41450 -11.34874 -11.23946 -10.92023 -10.62381 -10.42056 -10.39630 -9.54247 -8.81419 -8.10354 -6.12824 1.15381 1.40116 1.41424 1.48395 1.63321 2.43309 3.09550 3.21826 3.34348 3.54592 3.68848 3.80835 3.95999 4.01688 4.06339 4.09860 4.22202 4.29303 4.30948 4.32492 4.35347 4.39709 4.42496 4.44754 4.54429 4.56189 4.64488 4.69626 4.83121 4.87331 4.94060 5.01079 5.03568 5.15095 5.16537 5.22095 5.24578 5.26885 5.31051 5.34189 5.37854 5.40159 5.45138 5.52721 5.61742 5.63705 5.68628 5.78058 5.81484 5.85688 6.22945 6.38320 6.53018 6.79113 6.80313 7.00382 7.51721 8.99291 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008124 B = 0.004714 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.932023 B = 5937.925786 C = 8455.643261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.468 3.532 4 O -0.518 6.518 5 C 0.095 3.905 6 H 0.117 0.883 7 C -0.101 4.101 8 C 0.064 3.936 9 H 0.049 0.951 10 N -0.531 5.531 11 C 0.203 3.797 12 C -0.495 4.495 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.936 5.936 16 Si 0.946 3.054 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.087 3.913 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.098 4.098 28 C 0.072 3.928 29 N -0.669 5.669 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.059 0.941 35 H -0.015 1.015 36 H -0.002 1.002 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.032 0.968 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.043 0.957 52 H 0.047 0.953 53 H 0.073 0.927 54 H 0.082 0.918 55 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 5.489 -16.077 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.405 6.405 5 C -0.017 4.017 6 H 0.135 0.865 7 C -0.139 4.139 8 C -0.046 4.046 9 H 0.067 0.933 10 N -0.254 5.254 11 C 0.077 3.923 12 C -0.534 4.534 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.578 5.578 16 Si 0.773 3.227 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.194 1.194 20 C -0.020 4.020 21 C -0.178 4.178 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.162 4.162 26 C -0.163 4.163 27 C -0.136 4.136 28 C -0.057 4.057 29 N -0.302 5.302 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.003 0.997 36 H 0.016 0.984 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.062 0.938 52 H 0.065 0.935 53 H 0.092 0.908 54 H 0.100 0.900 55 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.271 6.311 -15.420 16.663 hybrid contribution 0.768 -1.446 1.053 1.947 sum 0.497 4.864 -14.367 15.176 Atomic orbital electron populations 1.23525 0.74892 1.05636 1.02379 1.86500 1.24979 1.32966 1.83932 1.23903 0.92199 0.81153 0.71723 1.90621 1.67385 1.37338 1.45195 1.21813 0.87142 0.93886 0.98826 0.86535 1.22551 0.96631 1.01166 0.93564 1.22801 0.94836 0.95681 0.91289 0.93297 1.62408 1.32622 1.24465 1.05935 1.19461 0.93811 0.88657 0.90376 1.21563 1.44377 0.96168 0.91259 0.91670 1.25662 0.96041 0.95106 1.02527 1.70063 1.50568 1.05625 1.31503 0.85778 0.78654 0.77957 0.80326 1.20114 1.21400 1.19385 1.22172 0.86379 0.94790 0.98705 1.22110 0.97705 0.98663 0.99281 1.21785 0.96713 0.97806 0.99272 1.21805 1.01654 0.94492 0.98073 1.21682 0.98570 0.96424 0.98324 1.21793 0.99417 0.99894 0.95052 1.21911 0.99357 0.96989 0.98000 1.21684 0.98050 0.96742 0.97133 1.22572 0.90661 0.97756 0.94684 1.61067 1.34513 1.24830 1.09776 0.92772 0.91419 0.84997 0.90379 0.92230 0.99738 0.98359 0.93285 0.86889 0.94947 0.93427 0.92214 0.91199 0.91533 0.90878 0.90729 0.91589 0.91723 0.91579 0.92765 0.91114 0.93833 0.93472 0.90832 0.89972 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.76 16 2 O -0.37 -9.70 10.57 -51.44 -0.54 -10.25 16 3 C 0.47 14.07 7.24 71.24 0.52 14.59 16 4 O -0.52 -18.63 16.34 21.98 0.36 -18.27 16 5 C 0.09 2.52 3.80 44.64 0.17 2.69 16 6 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 7 C -0.10 -3.39 4.87 31.98 0.16 -3.23 16 8 C 0.06 2.08 2.38 46.09 0.11 2.19 16 9 H 0.05 1.56 6.59 -2.39 -0.02 1.54 16 10 N -0.53 -21.14 4.29 -843.54 -3.62 -24.76 16 11 C 0.20 10.15 4.41 85.55 0.38 10.53 16 12 C -0.49 -26.98 6.75 25.60 0.17 -26.81 16 13 H 0.07 3.55 5.72 -2.91 -0.02 3.53 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.94 -55.66 13.29 21.45 0.28 -55.38 16 16 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.09 2.96 1.42 44.92 0.06 3.02 16 21 C -0.14 -4.64 3.89 30.60 0.12 -4.52 16 22 C -0.12 -2.99 5.48 30.59 0.17 -2.82 16 23 C -0.12 -2.47 5.47 30.59 0.17 -2.31 16 24 C -0.11 -2.10 5.59 30.60 0.17 -1.93 16 25 C -0.12 -2.84 5.47 30.59 0.17 -2.68 16 26 C -0.12 -3.55 5.48 30.59 0.17 -3.38 16 27 C -0.10 -3.66 3.48 30.59 0.11 -3.56 16 28 C 0.07 1.88 5.96 86.64 0.52 2.40 16 29 N -0.67 -16.89 6.64 -486.29 -3.23 -20.12 16 30 H 0.05 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.68 7.67 -2.38 -0.02 2.67 16 34 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 35 H -0.02 -0.82 5.73 -2.38 -0.01 -0.83 16 36 H 0.00 -0.09 6.42 -2.39 -0.02 -0.10 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.11 3.27 1.34 -2.39 0.00 3.27 16 39 H 0.03 1.35 6.65 -2.39 -0.02 1.33 16 40 H 0.05 1.58 6.35 -2.39 -0.02 1.56 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.82 4.69 -2.39 -0.01 1.81 16 43 H 0.07 1.41 4.66 -2.39 -0.01 1.40 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.19 7.47 -2.39 -0.02 1.18 16 47 H 0.06 1.62 5.47 -2.39 -0.01 1.60 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.07 1.94 4.69 -2.39 -0.01 1.93 16 51 H 0.04 1.79 7.05 -2.39 -0.02 1.77 16 52 H 0.05 2.12 6.08 -2.39 -0.01 2.11 16 53 H 0.07 2.22 7.69 -2.39 -0.02 2.20 16 54 H 0.08 1.65 7.33 -2.39 -0.02 1.63 16 55 H 0.36 6.71 8.91 -89.70 -0.80 5.91 16 Total: -1.00 -68.32 389.83 0.20 -68.12 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.11 Total: 27.25 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.81 Total: -13.39 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -6.56 Total: -100.26 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.18 Total: -28.52 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.32 0.20 -68.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246770020.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.380 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds