Wall clock time and date at job start Tue Mar 31 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47304 * 2 1 4 4 C 1.34227 * 117.00089 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99860 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00148 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47282 * 179.97438 * 6 4 3 8 8 C 1.46842 * 111.00186 * 169.99866 * 7 6 4 9 9 C 1.53036 * 109.52558 * 185.84187 * 8 7 6 10 10 C 1.53129 * 109.27853 * 300.81921 * 9 8 7 11 11 N 1.46892 * 109.52255 * 177.55917 * 10 9 8 12 12 C 1.46900 * 111.00240 * 293.67317 * 11 10 9 13 13 C 1.50701 * 109.47158 * 158.98992 * 12 11 10 14 14 H 1.07992 * 120.00337 * 2.60808 * 13 12 11 15 15 C 1.37883 * 119.99672 * 182.60555 * 13 12 11 16 16 N 1.31508 * 120.00277 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99850 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47449 * 119.99977 * 17 15 13 20 20 H 1.48495 * 109.47204 * 240.00364 * 17 15 13 21 21 C 1.46898 * 110.99957 * 169.72087 * 11 10 9 22 22 C 1.54886 * 110.48844 * 196.11876 * 21 11 10 23 23 C 1.55235 * 102.59153 * 156.67867 * 22 21 11 24 24 C 1.54268 * 104.22699 * 322.08552 * 23 22 21 25 25 C 1.53867 * 106.60244 * 23.61005 * 24 23 22 26 26 C 1.53122 * 109.20799 * 57.62371 * 10 9 8 27 27 C 1.46845 * 111.00059 * 294.21430 * 7 6 4 28 28 H 1.08997 * 109.47575 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47567 * 300.00318 * 1 2 3 30 30 H 1.09001 * 109.46889 * 60.00049 * 1 2 3 31 31 H 1.09000 * 109.47205 * 239.99278 * 2 1 3 32 32 H 1.09001 * 109.46889 * 119.99951 * 2 1 3 33 33 H 1.09003 * 109.46877 * 59.99709 * 6 4 3 34 34 H 1.08994 * 109.46986 * 300.00240 * 6 4 3 35 35 H 1.08998 * 109.46132 * 65.82663 * 8 7 6 36 36 H 1.09002 * 109.45584 * 305.85308 * 8 7 6 37 37 H 1.09000 * 109.50443 * 180.88494 * 9 8 7 38 38 H 1.09000 * 109.50750 * 60.76234 * 9 8 7 39 39 H 1.08996 * 109.52073 * 297.68981 * 10 9 8 40 40 H 1.08995 * 109.47222 * 278.99395 * 12 11 10 41 41 H 1.09003 * 109.46959 * 38.99207 * 12 11 10 42 42 H 0.96999 * 120.00123 * 179.97438 * 16 15 13 43 43 H 1.09007 * 110.43257 * 73.57604 * 21 11 10 44 44 H 1.09006 * 110.75697 * 275.06930 * 22 21 11 45 45 H 1.08996 * 110.75801 * 38.43376 * 22 21 11 46 46 H 1.08998 * 110.47167 * 203.39572 * 23 22 21 47 47 H 1.08996 * 110.58652 * 80.82427 * 23 22 21 48 48 H 1.09005 * 110.02747 * 264.32363 * 24 23 22 49 49 H 1.08998 * 110.07392 * 142.91995 * 24 23 22 50 50 H 1.09005 * 110.03476 * 240.72085 * 25 24 23 51 51 H 1.09001 * 110.03802 * 119.28244 * 25 24 23 52 52 H 1.08998 * 109.50355 * 62.31878 * 26 10 9 53 53 H 1.08998 * 109.50056 * 182.43620 * 26 10 9 54 54 H 1.09006 * 109.46033 * 294.17419 * 27 7 6 55 55 H 1.09002 * 109.46824 * 54.15170 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3877 2.8604 -0.0010 8 6 5.9840 4.1810 -0.2397 9 6 7.5015 4.0396 -0.3778 10 6 8.0708 3.4261 0.9045 11 7 9.5195 3.2339 0.7556 12 6 9.8139 2.2228 -0.2686 13 6 11.2254 2.4057 -0.7639 14 1 11.8560 3.1669 -0.3290 15 6 11.7117 1.6011 -1.7725 16 7 10.9437 0.6744 -2.3026 17 14 13.4615 1.8273 -2.3861 18 1 14.1123 2.9282 -1.6312 19 1 14.2242 0.5696 -2.1822 20 1 13.4393 2.1638 -3.8323 21 6 10.1381 2.8782 2.0396 22 6 11.6735 3.0715 1.9737 23 6 12.0558 3.2555 3.4669 24 6 10.8980 4.0884 4.0549 25 6 9.6788 3.8485 3.1474 26 6 7.3986 2.0738 1.1576 27 6 5.8838 2.2720 1.2495 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.5851 3.4698 0.8888 34 1 3.5845 3.4692 -0.8911 35 1 5.7553 4.8395 0.5982 36 1 5.5738 4.6042 -1.1566 37 1 7.9453 5.0219 -0.5392 38 1 7.7313 3.3922 -1.2241 39 1 7.8762 4.0925 1.7448 40 1 9.7061 1.2273 0.1621 41 1 9.1192 2.3357 -1.1009 42 1 11.2857 0.1086 -3.0124 43 1 9.8942 1.8502 2.3077 44 1 12.1563 2.1886 1.5546 45 1 11.9264 3.9615 1.3974 46 1 12.9981 3.7962 3.5553 47 1 12.1230 2.2895 3.9672 48 1 11.1614 5.1462 4.0546 49 1 10.6783 3.7590 5.0704 50 1 9.3504 4.7898 2.7066 51 1 8.8676 3.4018 3.7223 52 1 7.6266 1.3946 0.3361 53 1 7.7689 1.6526 2.0922 54 1 5.6555 2.9394 2.0806 55 1 5.4010 1.3087 1.4143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254409085.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:17 Heat of formation + Delta-G solvation = -100.309398 kcal Electronic energy + Delta-G solvation = -31352.875007 eV Core-core repulsion = 27388.707579 eV Total energy + Delta-G solvation = -3964.167427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68435 -40.74667 -39.00669 -37.61580 -36.40648 -34.77947 -33.01814 -32.39738 -31.80761 -30.11910 -28.89274 -28.61978 -27.02227 -24.74127 -24.23497 -23.93124 -22.92844 -21.86067 -21.21348 -20.97219 -19.63898 -18.73254 -18.41946 -17.73545 -17.41738 -16.97250 -16.82133 -16.50896 -16.26169 -15.98332 -15.51394 -15.25880 -15.07502 -14.71745 -14.44460 -14.28371 -14.18522 -14.02757 -13.86522 -13.71728 -13.60657 -13.35407 -13.00923 -12.84513 -12.73698 -12.72543 -12.53346 -12.50496 -12.24268 -12.14443 -12.01491 -11.90059 -11.75958 -11.67908 -11.60550 -11.53186 -11.23316 -11.21248 -11.20246 -11.06580 -10.84810 -10.48829 -9.29846 -8.86635 -8.11252 -6.18533 1.18796 1.39212 1.39639 1.52901 1.55877 2.43008 2.89574 3.19713 3.29837 3.71445 3.78804 3.90433 3.93474 3.95928 3.98382 4.07473 4.10471 4.20926 4.23112 4.31715 4.32651 4.35423 4.49219 4.55486 4.60907 4.63671 4.67166 4.73859 4.82195 4.84104 4.87759 4.91518 4.92275 4.94720 4.98643 5.07235 5.14055 5.15550 5.17573 5.21336 5.27294 5.33466 5.39438 5.45901 5.53021 5.54286 5.59862 5.62332 5.78377 5.97792 6.09430 6.20621 6.56084 6.78514 6.79888 6.98846 7.49160 8.99307 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.003029 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.636045 B = 9242.142008 C =10771.843371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.457 3.543 5 O -0.530 6.530 6 C 0.069 3.931 7 N -0.556 5.556 8 C 0.073 3.927 9 C -0.106 4.106 10 C 0.085 3.915 11 N -0.525 5.525 12 C 0.219 3.781 13 C -0.504 4.504 14 H 0.075 0.925 15 C -0.005 4.005 16 N -0.940 5.940 17 Si 0.959 3.041 18 H -0.259 1.259 19 H -0.285 1.285 20 H -0.282 1.282 21 C 0.087 3.913 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.111 4.111 26 C -0.136 4.136 27 C 0.070 3.930 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.098 0.902 40 H -0.054 1.054 41 H 0.006 0.994 42 H 0.258 0.742 43 H 0.008 0.992 44 H 0.039 0.961 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.065 0.935 52 H 0.027 0.973 53 H 0.053 0.947 54 H 0.055 0.945 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 8.352 11.191 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.300 3.700 5 O -0.418 6.418 6 C -0.059 4.059 7 N -0.282 5.282 8 C -0.053 4.053 9 C -0.144 4.144 10 C -0.024 4.024 11 N -0.247 5.247 12 C 0.093 3.907 13 C -0.543 4.543 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.582 5.582 17 Si 0.785 3.215 18 H -0.183 1.183 19 H -0.211 1.211 20 H -0.208 1.208 21 C -0.022 4.022 22 C -0.139 4.139 23 C -0.162 4.162 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.175 4.175 27 C -0.058 4.058 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.115 0.885 40 H -0.036 1.036 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.026 0.974 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.046 0.954 53 H 0.072 0.928 54 H 0.073 0.927 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.583 8.064 10.531 22.025 hybrid contribution 0.600 -1.616 -0.195 1.734 sum -16.983 6.448 10.337 20.901 Atomic orbital electron populations 1.21804 0.89963 1.04301 1.03933 1.23233 0.97289 0.79453 1.02067 1.86477 1.23804 1.33394 1.83972 1.24242 0.80570 0.93463 0.71692 1.90701 1.61028 1.44457 1.45638 1.21683 0.87679 0.89392 1.07136 1.61384 1.04760 1.25304 1.36784 1.22073 0.93277 0.87426 1.02563 1.21602 0.94896 1.00979 0.96962 1.21892 0.87113 0.94791 0.98586 1.62414 1.09318 1.46428 1.06587 1.19274 0.95708 0.86431 0.89327 1.21780 0.98520 1.16557 1.17438 0.90714 1.25897 1.01829 0.95299 0.97167 1.70143 1.38090 1.22380 1.27601 0.85478 0.79932 0.78039 0.78090 1.18289 1.21070 1.20767 1.22369 0.95326 0.95356 0.89157 1.22520 0.94645 1.00618 0.96088 1.22450 0.99017 1.00120 0.94582 1.22041 0.93798 1.00460 0.98620 1.22231 0.98321 0.99145 0.95205 1.22100 0.95974 0.99532 0.99903 1.21991 0.94428 0.99605 0.89755 0.88511 0.90856 0.91068 0.92178 0.91801 0.87513 0.83975 0.91709 0.88527 0.90129 0.94617 0.88461 1.03615 0.97609 0.93303 0.97368 0.94214 0.92042 0.90756 0.92116 0.90707 0.90530 0.90590 0.91640 0.95381 0.92795 0.92654 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.36 -7.74 10.22 -51.39 -0.53 -8.26 16 4 C 0.46 11.81 7.63 71.24 0.54 12.36 16 5 O -0.53 -18.73 14.08 21.96 0.31 -18.42 16 6 C 0.07 1.36 5.56 85.56 0.48 1.84 16 7 N -0.56 -15.50 4.40 -900.92 -3.96 -19.46 16 8 C 0.07 1.76 5.46 86.33 0.47 2.23 16 9 C -0.11 -3.58 5.40 30.65 0.17 -3.41 16 10 C 0.08 3.00 1.95 45.00 0.09 3.09 16 11 N -0.53 -22.65 4.30 -843.70 -3.63 -26.28 16 12 C 0.22 12.05 3.30 85.56 0.28 12.34 16 13 C -0.50 -29.12 7.58 25.60 0.19 -28.92 16 14 H 0.07 4.17 5.46 -2.91 -0.02 4.15 16 15 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 16 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 17 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 21 C 0.09 3.35 2.07 45.99 0.10 3.44 16 22 C -0.10 -3.91 4.55 32.01 0.15 -3.77 16 23 C -0.12 -3.54 6.84 31.79 0.22 -3.33 16 24 C -0.11 -2.67 6.80 31.32 0.21 -2.46 16 25 C -0.11 -3.14 5.04 31.32 0.16 -2.98 16 26 C -0.14 -5.11 4.75 30.65 0.15 -4.96 16 27 C 0.07 2.11 5.10 86.33 0.44 2.55 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 33 H 0.11 1.44 8.12 -2.39 -0.02 1.42 16 34 H 0.14 2.06 7.99 -2.39 -0.02 2.04 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.93 8.02 -2.39 -0.02 1.91 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.04 1.54 6.18 -2.39 -0.01 1.53 16 39 H 0.10 2.88 5.93 -2.39 -0.01 2.87 16 40 H -0.05 -3.37 7.17 -2.39 -0.02 -3.38 16 41 H 0.01 0.36 5.80 -2.39 -0.01 0.35 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.01 0.36 7.15 -2.38 -0.02 0.35 16 44 H 0.04 1.79 7.20 -2.38 -0.02 1.77 16 45 H 0.06 2.52 7.16 -2.39 -0.02 2.51 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.08 2.08 7.03 -2.38 -0.02 2.07 16 51 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.03 1.35 6.63 -2.39 -0.02 1.33 16 53 H 0.05 2.01 7.16 -2.39 -0.02 1.99 16 54 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 55 H 0.07 2.20 5.79 -2.39 -0.01 2.19 16 Total: -1.00 -76.39 408.05 0.64 -75.75 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.85 Total: 19.23 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 5.28 Total: -11.25 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -7.30 Total: -105.29 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.22 Total: -26.68 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.39 0.64 -75.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254409085.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.562 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds