Wall clock time and date at job start Tue Mar 31 2020 22:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45203 * 109.47510 * 2 1 4 4 C 1.34221 * 117.00482 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99987 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00107 * 179.97438 * 4 3 2 7 7 N 1.46906 * 109.47115 * 174.26782 * 6 4 3 8 8 C 1.46897 * 111.00197 * 289.50371 * 7 6 4 9 9 C 1.50710 * 109.47123 * 294.76935 * 8 7 6 10 10 H 1.07997 * 119.99721 * 358.09149 * 9 8 7 11 11 C 1.37875 * 119.99770 * 178.08956 * 9 8 7 12 12 N 1.31520 * 120.00380 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99829 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46888 * 60.00441 * 13 11 9 15 15 H 1.48498 * 109.47168 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47437 * 300.00657 * 13 11 9 17 17 C 1.46907 * 111.00190 * 165.55204 * 7 6 4 18 18 H 1.08997 * 109.50003 * 64.03100 * 17 7 6 19 19 C 1.53108 * 109.53638 * 184.13106 * 17 7 6 20 20 C 1.53123 * 109.16276 * 177.61054 * 19 17 7 21 21 C 1.53037 * 109.27810 * 302.35041 * 20 19 17 22 22 N 1.46840 * 109.52325 * 59.17474 * 21 20 19 23 23 C 1.46908 * 111.00001 * 174.16227 * 22 21 20 24 24 C 1.54274 * 110.02705 * 305.77616 * 23 22 21 25 25 C 1.54892 * 104.19016 * 217.10154 * 24 23 22 26 26 C 1.54896 * 102.75013 * 37.94452 * 25 24 23 27 27 C 1.53873 * 110.03409 * 188.60887 * 23 22 21 28 28 C 1.46845 * 111.20008 * 298.25723 * 22 21 20 29 29 H 1.09000 * 109.47399 * 60.00421 * 1 2 3 30 30 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47498 * 300.00133 * 1 2 3 32 32 H 1.08998 * 109.47250 * 239.99375 * 2 1 3 33 33 H 1.09005 * 109.47064 * 119.99911 * 2 1 3 34 34 H 1.09000 * 109.47604 * 54.26737 * 6 4 3 35 35 H 1.08998 * 109.47756 * 294.26411 * 6 4 3 36 36 H 1.09007 * 109.47163 * 54.76472 * 8 7 6 37 37 H 1.08999 * 109.47622 * 174.77104 * 8 7 6 38 38 H 0.96994 * 120.00140 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.52321 * 297.51944 * 19 17 7 40 40 H 1.09004 * 109.52751 * 57.70859 * 19 17 7 41 41 H 1.09006 * 109.49425 * 62.28432 * 20 19 17 42 42 H 1.08998 * 109.50447 * 182.36272 * 20 19 17 43 43 H 1.08991 * 109.45916 * 299.15553 * 21 20 19 44 44 H 1.09002 * 109.45739 * 179.18826 * 21 20 19 45 45 H 1.08998 * 110.01314 * 67.21322 * 23 22 21 46 46 H 1.08998 * 110.48488 * 335.77603 * 24 23 22 47 47 H 1.08993 * 110.48452 * 98.42509 * 24 23 22 48 48 H 1.08995 * 110.76086 * 279.62732 * 25 24 23 49 49 H 1.09000 * 110.75596 * 156.25450 * 25 24 23 50 50 H 1.08991 * 110.48585 * 203.37643 * 26 25 24 51 51 H 1.09006 * 110.48760 * 80.73070 * 26 25 24 52 52 H 1.08999 * 110.02890 * 238.56445 * 27 23 22 53 53 H 1.08995 * 110.03185 * 359.97438 * 27 23 22 54 54 H 1.09000 * 109.46600 * 181.76231 * 28 22 21 55 55 H 1.09007 * 109.46221 * 301.72630 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9206 2.9374 0.0000 7 7 5.3812 2.8632 0.1391 8 6 5.7600 2.4298 1.4906 9 6 5.3401 3.4767 2.4900 10 1 4.8695 4.3880 2.1519 11 6 5.5568 3.2710 3.8360 12 7 6.1304 2.1614 4.2478 13 14 5.0370 4.5689 5.0748 14 1 3.5714 4.7879 4.9767 15 1 5.3788 4.1103 6.4452 16 1 5.7478 5.8406 4.7872 17 6 6.0080 4.1488 -0.1965 18 1 5.6872 4.9073 0.5175 19 6 7.5314 4.0057 -0.1406 20 6 8.1762 5.3330 -0.5495 21 6 7.6966 5.7171 -1.9511 22 7 6.2335 5.8423 -1.9519 23 6 5.7488 6.3443 -3.2447 24 6 6.4658 7.6628 -3.6019 25 6 5.3699 8.5178 -4.2855 26 6 4.1049 8.1760 -3.4596 27 6 4.2478 6.6706 -3.1542 28 6 5.5913 4.5672 -1.6083 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.5046 3.5031 0.8336 35 1 3.6698 3.4340 -0.9373 36 1 5.2643 1.4870 1.7221 37 1 6.8404 2.2938 1.5391 38 1 6.2832 2.0168 5.1946 39 1 7.8362 3.7500 0.8742 40 1 7.8490 3.2201 -0.8262 41 1 7.8895 6.1102 0.1590 42 1 9.2608 5.2251 -0.5521 43 1 7.9956 4.9462 -2.6611 44 1 8.1427 6.6690 -2.2393 45 1 5.9232 5.6010 -4.0226 46 1 6.8277 8.1566 -2.7001 47 1 7.2886 7.4748 -4.2915 48 1 5.2429 8.2222 -5.3269 49 1 5.6052 9.5794 -4.2101 50 1 3.2050 8.3626 -4.0455 51 1 4.0856 8.7527 -2.5348 52 1 3.6938 6.0864 -3.8889 53 1 3.8789 6.4561 -2.1513 54 1 4.5082 4.6838 -1.6478 55 1 5.9001 3.8016 -2.3201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256924674.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:21 Heat of formation + Delta-G solvation = -103.310872 kcal Electronic energy + Delta-G solvation = -31734.885751 eV Core-core repulsion = 27770.588170 eV Total energy + Delta-G solvation = -3964.297581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54685 -40.71454 -38.92926 -37.57536 -36.62970 -34.58724 -33.40525 -32.65247 -31.20872 -29.95127 -29.38781 -28.13251 -27.16350 -25.17161 -24.11246 -23.89615 -22.72776 -21.60162 -21.07005 -20.59262 -20.39870 -18.82536 -18.34491 -17.88922 -17.49778 -17.04004 -16.69935 -16.54202 -16.14575 -15.71267 -15.41727 -15.32931 -15.15758 -14.78565 -14.52024 -14.30642 -14.22018 -14.11895 -13.81888 -13.67887 -13.55296 -13.10490 -12.97684 -12.88689 -12.68113 -12.53386 -12.47312 -12.39339 -12.15720 -12.08550 -11.96872 -11.91115 -11.87089 -11.79219 -11.65918 -11.55925 -11.48289 -11.36637 -11.28083 -11.16420 -10.89589 -10.56726 -9.19057 -9.07671 -8.14242 -6.33920 1.30361 1.37253 1.38828 1.46480 1.68860 2.37518 2.82709 3.11622 3.38852 3.69226 3.80009 3.86604 3.88839 4.00196 4.06792 4.11880 4.13536 4.16850 4.26645 4.34882 4.37087 4.50109 4.55013 4.56757 4.64338 4.66225 4.68768 4.74865 4.78222 4.84898 4.86194 4.92761 4.93380 5.00174 5.02650 5.13404 5.14355 5.14750 5.17307 5.23864 5.27893 5.30529 5.34388 5.39344 5.43152 5.50667 5.51621 5.56791 5.78325 5.98281 6.11702 6.17844 6.34106 6.46878 6.85396 6.92030 7.37398 8.88868 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007778 B = 0.004203 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.827496 B = 6660.368274 C = 8681.211164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.466 3.534 5 O -0.525 6.525 6 C 0.065 3.935 7 N -0.528 5.528 8 C 0.207 3.793 9 C -0.554 4.554 10 H 0.064 0.936 11 C 0.014 3.986 12 N -0.927 5.927 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.267 1.267 17 C 0.104 3.896 18 H 0.039 0.961 19 C -0.104 4.104 20 C -0.106 4.106 21 C 0.060 3.940 22 N -0.536 5.536 23 C 0.079 3.921 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.122 4.122 28 C 0.070 3.930 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.001 0.999 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.031 0.969 44 H 0.095 0.905 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.068 0.932 53 H 0.061 0.939 54 H 0.081 0.919 55 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 9.570 -17.481 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.413 6.413 6 C -0.064 4.064 7 N -0.253 5.253 8 C 0.081 3.919 9 C -0.592 4.592 10 H 0.082 0.918 11 C -0.186 4.186 12 N -0.567 5.567 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.192 1.192 17 C -0.004 4.004 18 H 0.057 0.943 19 C -0.143 4.143 20 C -0.145 4.145 21 C -0.067 4.067 22 N -0.262 5.262 23 C -0.029 4.029 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.160 4.160 28 C -0.058 4.058 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.019 0.981 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.113 0.887 45 H 0.056 0.944 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.078 0.922 52 H 0.087 0.913 53 H 0.080 0.920 54 H 0.099 0.901 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.571 9.123 -17.311 20.345 hybrid contribution 0.047 -0.420 1.419 1.481 sum -5.524 8.703 -15.892 18.942 Atomic orbital electron populations 1.21799 0.89704 1.04436 1.03799 1.23250 0.97494 0.79533 1.01921 1.86472 1.23946 1.33562 1.84255 1.24020 0.80447 0.93197 0.71449 1.90611 1.61056 1.44047 1.45597 1.21599 0.90485 0.89554 1.04738 1.62134 1.05291 1.28962 1.28882 1.19371 0.95060 0.94344 0.83126 1.21923 1.40189 1.04544 0.92586 0.91834 1.25794 0.94930 0.97274 1.00564 1.70097 1.43763 1.26964 1.15863 0.85671 0.79093 0.79516 0.77848 1.19283 1.21087 1.19189 1.21363 0.94547 0.88978 0.95482 0.94258 1.21484 0.94367 0.97975 1.00431 1.21520 1.00039 0.95952 0.96954 1.22104 0.87449 1.01172 0.95987 1.62048 1.06118 1.27086 1.30903 1.22381 0.95655 0.96521 0.88354 1.22464 0.98041 0.94308 1.00502 1.22453 0.94195 0.99836 0.99093 1.22292 0.98537 0.94850 0.99925 1.22254 0.94563 0.97459 1.01712 1.22062 0.99271 0.89767 0.94675 0.90488 0.87980 0.91723 0.91107 0.93020 0.90645 0.84956 0.98104 0.97411 0.92784 0.94075 0.92841 0.92111 0.90058 0.95083 0.88698 0.94356 0.91061 0.91011 0.90813 0.90663 0.90803 0.92189 0.91288 0.92040 0.90095 0.95062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 10.29 71.98 0.74 -1.97 16 2 C 0.05 1.48 6.19 71.98 0.45 1.93 16 3 O -0.37 -12.82 10.22 -51.33 -0.52 -13.34 16 4 C 0.47 19.28 7.52 71.23 0.54 19.82 16 5 O -0.53 -25.42 14.77 21.95 0.32 -25.10 16 6 C 0.07 2.54 5.24 85.55 0.45 2.99 16 7 N -0.53 -23.25 4.20 -879.75 -3.70 -26.95 16 8 C 0.21 11.32 4.42 85.56 0.38 11.70 16 9 C -0.55 -30.60 7.45 25.60 0.19 -30.41 16 10 H 0.06 3.38 5.90 -2.91 -0.02 3.36 16 11 C 0.01 0.79 5.46 84.65 0.46 1.25 16 12 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 13 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.10 3.99 1.78 44.96 0.08 4.07 16 18 H 0.04 1.69 6.35 -2.39 -0.02 1.68 16 19 C -0.10 -3.91 4.98 30.67 0.15 -3.76 16 20 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 21 C 0.06 1.47 5.18 86.33 0.45 1.92 16 22 N -0.54 -13.93 4.41 -866.87 -3.83 -17.75 16 23 C 0.08 1.64 2.67 45.64 0.12 1.76 16 24 C -0.12 -1.94 5.06 31.67 0.16 -1.78 16 25 C -0.12 -1.66 6.91 31.89 0.22 -1.44 16 26 C -0.12 -1.91 6.83 31.67 0.22 -1.69 16 27 C -0.12 -2.37 5.88 31.32 0.18 -2.19 16 28 C 0.07 2.12 4.19 86.33 0.36 2.48 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 33 H 0.05 1.64 8.13 -2.38 -0.02 1.62 16 34 H 0.08 3.13 6.62 -2.39 -0.02 3.11 16 35 H 0.13 4.12 5.53 -2.39 -0.01 4.10 16 36 H 0.00 0.05 6.43 -2.38 -0.02 0.04 16 37 H 0.01 0.47 6.44 -2.39 -0.02 0.45 16 38 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.04 1.83 6.58 -2.39 -0.02 1.81 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 1.91 6.37 -2.39 -0.02 1.90 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.34 7.39 -2.39 -0.02 1.32 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 52 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.06 1.41 6.73 -2.39 -0.02 1.39 16 54 H 0.08 2.28 4.43 -2.39 -0.01 2.27 16 55 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -69.32 409.37 0.77 -68.55 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.85 Total: 23.01 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.33 Total: 1.77 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -7.24 Total: -101.11 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.20 Total: -38.44 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.32 0.77 -68.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256924674.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.764 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds