Wall clock time and date at job start Tue Mar 31 2020 22:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47242 * 295.00231 * 7 6 4 9 9 C 1.52997 * 109.47242 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47380 * 59.99720 * 9 8 7 11 11 N 1.46901 * 109.47080 * 179.97438 * 10 9 8 12 12 C 1.46955 * 111.00000 * 58.79941 * 11 10 9 13 13 C 1.53045 * 109.36567 * 176.80660 * 12 11 10 14 14 N 1.46959 * 109.36086 * 58.40266 * 13 12 11 15 15 C 1.46901 * 111.00099 * 176.81002 * 14 13 12 16 16 C 1.50700 * 109.47201 * 293.80378 * 15 14 13 17 17 H 1.07997 * 120.00067 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99986 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00106 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99752 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47551 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47026 * 119.99939 * 20 18 16 23 23 H 1.48501 * 109.47194 * 239.99419 * 20 18 16 24 24 C 1.46955 * 110.88047 * 300.67859 * 14 13 12 25 25 C 1.46959 * 111.00099 * 294.99908 * 11 10 9 26 26 C 1.53002 * 109.46654 * 300.00174 * 10 9 8 27 27 C 1.52994 * 109.47404 * 174.99684 * 7 6 4 28 28 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 30 30 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 31 31 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 32 32 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 33 33 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 34 34 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 35 35 H 1.09008 * 109.47017 * 54.99761 * 7 6 4 36 36 H 1.09008 * 109.46731 * 299.99706 * 8 7 6 37 37 H 1.08998 * 109.47430 * 59.99652 * 8 7 6 38 38 H 1.08998 * 109.46934 * 299.99660 * 9 8 7 39 39 H 1.09000 * 109.47325 * 179.97438 * 9 8 7 40 40 H 1.08998 * 109.46692 * 59.99766 * 10 9 8 41 41 H 1.08999 * 109.48903 * 296.78209 * 12 11 10 42 42 H 1.09007 * 109.48880 * 56.84356 * 12 11 10 43 43 H 1.09002 * 109.49137 * 298.43724 * 13 12 11 44 44 H 1.09001 * 109.49027 * 178.36937 * 13 12 11 45 45 H 1.09007 * 109.47052 * 53.79485 * 15 14 13 46 46 H 1.08995 * 109.47602 * 173.79592 * 15 14 13 47 47 H 0.97004 * 120.00487 * 180.02562 * 19 18 16 48 48 H 1.08999 * 109.48903 * 299.34876 * 24 14 13 49 49 H 1.09007 * 109.48880 * 179.28730 * 24 14 13 50 50 H 1.08998 * 109.48458 * 303.15642 * 25 11 10 51 51 H 1.09002 * 109.48807 * 63.22253 * 25 11 10 52 52 H 1.08995 * 109.46734 * 299.99283 * 26 10 9 53 53 H 1.09002 * 109.46264 * 180.02562 * 26 10 9 54 54 H 1.09000 * 109.47476 * 300.00087 * 27 7 6 55 55 H 1.09008 * 109.46970 * 60.00049 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 5.9261 2.2212 1.3069 9 6 7.4540 2.1406 1.3065 10 6 8.0390 3.5488 1.1810 11 7 9.5060 3.4713 1.1812 12 6 9.9894 2.6345 0.0741 13 6 11.5197 2.6441 0.0615 14 7 12.0207 2.1476 1.3507 15 6 13.4877 2.0701 1.3510 16 6 13.9355 1.0198 0.3675 17 1 13.2035 0.4649 -0.2006 18 6 15.2796 0.7664 0.1937 19 7 16.1709 1.4416 0.8858 20 14 15.8345 -0.5362 -1.0249 21 1 14.6458 -1.1474 -1.6718 22 1 16.6943 0.0899 -2.0614 23 1 16.6048 -1.5859 -0.3109 24 6 11.5374 2.9844 2.4578 25 6 10.0070 2.9749 2.4705 26 6 7.5615 4.1847 -0.1261 27 6 6.0331 4.2656 -0.1254 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5844 3.4700 -0.8895 34 1 3.5852 3.4690 0.8905 35 1 5.7805 2.2499 -0.8423 36 1 5.5942 2.8286 2.1490 37 1 5.5097 1.2179 1.3961 38 1 7.7855 1.5330 0.4644 39 1 7.7942 1.6878 2.2378 40 1 7.7074 4.1563 2.0231 41 1 9.6331 1.6131 0.2079 42 1 9.6155 3.0296 -0.8705 43 1 11.8758 3.6616 -0.0996 44 1 11.8808 2.0009 -0.7411 45 1 13.9026 3.0365 1.0643 46 1 13.8375 1.8062 2.3489 47 1 17.1166 1.2637 0.7633 48 1 11.8937 4.0058 2.3241 49 1 11.9113 2.5893 3.4025 50 1 9.6459 3.6181 3.2729 51 1 9.6510 1.9573 2.6315 52 1 7.8931 3.5772 -0.9680 53 1 7.9787 5.1878 -0.2156 54 1 5.6930 4.7188 -1.0565 55 1 5.7012 4.8730 0.7168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258035095.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:43 Heat of formation + Delta-G solvation = -117.948173 kcal Electronic energy + Delta-G solvation = -30299.980985 eV Core-core repulsion = 26335.048683 eV Total energy + Delta-G solvation = -3964.932302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.70227 -40.86272 -39.00788 -37.68144 -36.28911 -34.64142 -32.98963 -32.28897 -31.94202 -31.49943 -29.77672 -27.89033 -26.11973 -24.72383 -24.18463 -23.77474 -23.29768 -22.47114 -21.43579 -20.83651 -19.86733 -18.63380 -18.50346 -17.69556 -17.45411 -17.22337 -16.58960 -16.19530 -15.87402 -15.67274 -15.52580 -15.41238 -15.18474 -14.97318 -14.88255 -14.65265 -14.21476 -13.90429 -13.86327 -13.53289 -13.45155 -13.31090 -13.16987 -12.95401 -12.77251 -12.65394 -12.57257 -12.53455 -12.46061 -12.38467 -12.24872 -12.14018 -11.81470 -11.73906 -11.69814 -11.52553 -11.43677 -11.42574 -11.15220 -10.97423 -10.87243 -10.64264 -9.19979 -9.00340 -8.22779 -6.33183 1.22652 1.38601 1.39188 1.53135 1.74072 2.38214 2.95292 3.09156 3.29759 3.65554 3.71899 3.78115 3.96611 3.99046 4.02976 4.07571 4.10176 4.21146 4.31023 4.35305 4.37639 4.38770 4.44802 4.51800 4.54491 4.57322 4.62826 4.68683 4.72975 4.79153 4.83661 4.85433 4.91518 4.93734 4.98495 5.00382 5.03398 5.13731 5.14785 5.20242 5.24086 5.24952 5.28730 5.30496 5.35234 5.48025 5.57332 5.61526 5.62202 6.01243 6.12288 6.19278 6.36866 6.62193 6.78363 6.82804 7.36520 8.88658 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002033 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.004299 B =13769.670682 C =14694.528915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.456 3.544 5 O -0.539 6.539 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.109 4.109 9 C -0.145 4.145 10 C 0.089 3.911 11 N -0.538 5.538 12 C 0.068 3.932 13 C 0.070 3.930 14 N -0.546 5.546 15 C 0.209 3.791 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.277 1.277 24 C 0.054 3.946 25 C 0.070 3.930 26 C -0.110 4.110 27 C -0.100 4.100 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.016 0.984 44 H 0.064 0.936 45 H -0.040 1.040 46 H 0.003 0.997 47 H 0.265 0.735 48 H 0.022 0.978 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.035 0.965 52 H 0.053 0.947 53 H 0.073 0.927 54 H 0.085 0.915 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.019 5.789 -1.326 34.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.301 3.699 5 O -0.429 6.429 6 C -0.140 4.140 7 C -0.092 4.092 8 C -0.147 4.147 9 C -0.184 4.184 10 C -0.018 4.018 11 N -0.261 5.261 12 C -0.060 4.060 13 C -0.059 4.059 14 N -0.271 5.271 15 C 0.082 3.918 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.074 4.074 25 C -0.059 4.059 26 C -0.148 4.148 27 C -0.138 4.138 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.110 0.890 43 H 0.034 0.966 44 H 0.082 0.918 45 H -0.022 1.022 46 H 0.022 0.978 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.087 0.913 50 H 0.115 0.885 51 H 0.054 0.946 52 H 0.072 0.928 53 H 0.092 0.908 54 H 0.104 0.896 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -33.641 5.504 -1.289 34.112 hybrid contribution 1.332 -1.211 -0.322 1.828 sum -32.309 4.293 -1.611 32.633 Atomic orbital electron populations 1.21813 0.90467 1.04207 1.03812 1.23204 0.97066 0.79662 1.02138 1.86513 1.24600 1.33188 1.83816 1.24521 0.80324 0.93927 0.71155 1.90676 1.60890 1.44778 1.46561 1.21613 0.95055 0.89176 1.08154 1.20988 0.92330 0.97764 0.98144 1.21589 0.94199 1.01108 0.97839 1.22108 0.96936 0.98468 1.00857 1.21832 0.84894 0.95130 0.99991 1.62429 1.10048 1.50830 1.02822 1.22103 0.93042 0.95402 0.95417 1.21972 0.94867 0.96846 0.92201 1.62206 1.11176 1.50318 1.03369 1.19354 0.82780 0.93873 0.95771 1.21463 0.91950 1.20109 1.22646 0.92144 1.25931 0.96687 0.98806 0.98255 1.70092 1.01679 1.42858 1.42774 0.85311 0.78279 0.78464 0.78411 1.18903 1.20180 1.20279 1.22163 0.95865 0.94630 0.94759 1.22062 0.92889 0.98812 0.92092 1.21583 0.96248 1.01115 0.95811 1.21513 0.93512 0.94828 1.03940 0.88656 0.91126 0.91106 0.91825 0.91839 0.85053 0.85186 0.92344 0.90637 0.92765 0.93630 0.93108 0.88884 0.94990 0.89001 0.96586 0.91776 1.02219 0.97846 0.92629 0.96004 0.91325 0.88490 0.94639 0.92832 0.90801 0.89637 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 71.98 0.74 -0.35 16 2 C 0.05 0.71 6.19 71.98 0.45 1.16 16 3 O -0.36 -5.76 10.22 -51.41 -0.53 -6.28 16 4 C 0.46 7.97 7.68 71.24 0.55 8.52 16 5 O -0.54 -13.54 13.72 21.97 0.30 -13.24 16 6 C -0.10 -1.04 5.29 29.85 0.16 -0.88 16 7 C -0.07 -1.07 1.84 -10.80 -0.02 -1.09 16 8 C -0.11 -2.02 4.94 30.59 0.15 -1.87 16 9 C -0.14 -3.32 4.50 30.60 0.14 -3.19 16 10 C 0.09 1.91 2.23 44.92 0.10 2.01 16 11 N -0.54 -15.44 4.70 -870.47 -4.09 -19.53 16 12 C 0.07 2.24 4.81 86.31 0.42 2.65 16 13 C 0.07 2.93 5.43 86.31 0.47 3.39 16 14 N -0.55 -25.41 4.70 -900.29 -4.23 -29.64 16 15 C 0.21 11.77 4.72 85.56 0.40 12.18 16 16 C -0.52 -30.97 8.47 25.60 0.22 -30.75 16 17 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 18 C 0.00 0.07 5.46 84.66 0.46 0.53 16 19 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 20 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C 0.05 2.11 5.61 86.31 0.48 2.59 16 25 C 0.07 2.11 5.25 86.31 0.45 2.56 16 26 C -0.11 -1.93 5.01 30.61 0.15 -1.78 16 27 C -0.10 -1.13 5.21 30.61 0.16 -0.97 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 1.13 7.96 -2.38 -0.02 1.11 16 36 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.05 1.26 5.96 -2.39 -0.01 1.25 16 38 H 0.04 1.25 6.46 -2.39 -0.02 1.23 16 39 H 0.05 1.28 6.59 -2.39 -0.02 1.27 16 40 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 41 H 0.03 1.12 6.46 -2.39 -0.02 1.10 16 42 H 0.09 2.63 6.18 -2.38 -0.01 2.62 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 2.90 6.79 -2.39 -0.02 2.89 16 45 H -0.04 -2.44 8.12 -2.38 -0.02 -2.46 16 46 H 0.00 0.21 8.03 -2.39 -0.02 0.19 16 47 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 48 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.07 2.63 8.07 -2.38 -0.02 2.61 16 50 H 0.10 2.41 8.12 -2.39 -0.02 2.39 16 51 H 0.04 1.13 6.60 -2.39 -0.02 1.12 16 52 H 0.05 1.08 6.36 -2.39 -0.02 1.07 16 53 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 55 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -72.97 411.47 0.08 -72.89 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.84 Total: 10.83 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.48 Total: -5.28 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -8.04 Total: -106.59 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.22 Total: -19.52 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.97 0.08 -72.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258035095.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.060 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds