Wall clock time and date at job start Tue Mar 31 2020 22:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99881 * 2 1 4 4 H 1.08998 * 109.46933 * 34.88382 * 3 2 1 5 5 C 1.50700 * 109.47442 * 274.88017 * 3 2 1 6 6 O 1.21275 * 119.99776 * 330.80772 * 5 3 2 7 7 N 1.34773 * 119.99929 * 150.81739 * 5 3 2 8 8 C 1.46926 * 120.62998 * 354.54737 * 7 5 3 9 9 C 1.53624 * 108.54057 * 126.37173 * 8 7 5 10 10 C 1.53047 * 109.24011 * 54.85895 * 9 8 7 11 11 C 1.53041 * 109.53899 * 298.51013 * 10 9 8 12 12 C 1.46919 * 120.63259 * 174.84071 * 7 5 3 13 13 H 1.08992 * 109.59551 * 113.64797 * 12 7 5 14 14 C 1.53003 * 109.58390 * 353.36303 * 12 7 5 15 15 N 1.46506 * 109.47066 * 181.60206 * 14 12 7 16 16 C 1.46495 * 120.00139 * 95.38182 * 15 14 12 17 17 C 1.36934 * 119.99840 * 275.37739 * 15 14 12 18 18 H 1.08001 * 120.00208 * 33.92988 * 17 15 14 19 19 C 1.38816 * 119.99818 * 213.92540 * 17 15 14 20 20 N 1.31614 * 120.00222 * 5.43114 * 19 17 15 21 21 Si 1.86801 * 119.99701 * 185.43032 * 19 17 15 22 22 H 1.48495 * 109.47190 * 95.00061 * 21 19 17 23 23 H 1.48501 * 109.46945 * 215.00032 * 21 19 17 24 24 H 1.48503 * 109.47404 * 334.99923 * 21 19 17 25 25 C 1.53006 * 109.46636 * 154.87663 * 3 2 1 26 26 C 1.53874 * 110.03193 * 306.41949 * 25 3 2 27 27 C 1.54264 * 106.63744 * 240.64044 * 26 25 3 28 28 C 1.54964 * 104.16161 * 336.44830 * 27 26 25 29 29 C 1.54265 * 110.07007 * 189.22911 * 25 3 2 30 30 H 1.08997 * 109.47077 * 184.98222 * 1 2 3 31 31 H 1.08999 * 109.46687 * 304.98350 * 1 2 3 32 32 H 1.09000 * 109.47145 * 64.98306 * 1 2 3 33 33 H 1.08998 * 109.59051 * 246.20720 * 8 7 5 34 34 H 1.09000 * 109.58602 * 6.64033 * 8 7 5 35 35 H 1.08995 * 109.63808 * 294.86809 * 9 8 7 36 36 H 1.09001 * 109.46311 * 174.73953 * 9 8 7 37 37 H 1.09004 * 109.46000 * 178.48640 * 10 9 8 38 38 H 1.09004 * 109.45848 * 58.53416 * 10 9 8 39 39 H 1.08998 * 109.49695 * 301.41482 * 11 10 9 40 40 H 1.08997 * 109.52624 * 181.32912 * 11 10 9 41 41 H 1.09003 * 109.47452 * 301.60206 * 14 12 7 42 42 H 1.09003 * 109.46873 * 61.60260 * 14 12 7 43 43 H 1.08995 * 109.47620 * 94.93119 * 16 15 14 44 44 H 1.09001 * 109.47194 * 214.93647 * 16 15 14 45 45 H 1.09007 * 109.47075 * 334.93045 * 16 15 14 46 46 H 0.96995 * 120.00074 * 179.97438 * 20 19 17 47 47 H 1.09000 * 110.01132 * 67.81053 * 25 3 2 48 48 H 1.08995 * 110.03661 * 359.95094 * 26 25 3 49 49 H 1.09002 * 110.03144 * 121.33805 * 26 25 3 50 50 H 1.09004 * 110.48730 * 95.09814 * 27 26 25 51 51 H 1.09004 * 110.48958 * 217.73723 * 27 26 25 52 52 H 1.09004 * 110.72143 * 279.56945 * 28 27 26 53 53 H 1.09008 * 110.92183 * 156.29378 * 28 27 26 54 54 H 1.09005 * 110.48636 * 261.59529 * 29 25 3 55 55 H 1.08994 * 110.49133 * 24.10591 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3879 1.9802 0.5877 5 6 2.1042 1.8136 -1.4156 6 8 2.2329 1.0313 -2.3334 7 7 2.0453 3.1374 -1.6617 8 6 1.7708 4.0891 -0.5765 9 6 2.8812 5.1506 -0.5652 10 6 2.9811 5.7907 -1.9518 11 6 3.3476 4.7218 -2.9838 12 6 2.2480 3.6558 -3.0214 13 1 1.3206 4.0971 -3.3863 14 6 2.6720 2.5142 -3.9476 15 7 2.9104 3.0405 -5.2939 16 6 4.2677 3.4035 -5.7087 17 6 1.8645 3.1931 -6.1645 18 1 0.8881 3.4667 -5.7930 19 6 2.0594 2.9961 -7.5248 20 7 3.2196 2.5595 -7.9669 21 14 0.6749 3.3508 -8.7276 22 1 0.8267 4.7265 -9.2654 23 1 0.7275 2.3739 -9.8448 24 1 -0.6302 3.2337 -8.0287 25 6 3.4109 1.2401 0.6125 26 6 3.3496 0.5738 1.9982 27 6 3.8637 1.6162 3.0125 28 6 4.7442 2.5684 2.1643 29 6 3.9595 2.6650 0.8324 30 1 -0.3633 -1.0238 0.0892 31 1 -0.3633 0.5892 0.8420 32 1 -0.3633 0.4346 -0.9312 33 1 0.8060 4.5673 -0.7451 34 1 1.7580 3.5617 0.3774 35 1 3.8324 4.6830 -0.3111 36 1 2.6438 5.9168 0.1729 37 1 3.7498 6.5634 -1.9405 38 1 2.0221 6.2368 -2.2157 39 1 4.2944 4.2582 -2.7069 40 1 3.4418 5.1821 -3.9674 41 1 3.5868 2.0590 -3.5682 42 1 1.8817 1.7644 -3.9853 43 1 4.7227 2.5656 -6.2367 44 1 4.2264 4.2698 -6.3690 45 1 4.8640 3.6455 -4.8289 46 1 3.3557 2.4215 -8.9173 47 1 4.0784 0.6797 -0.0421 48 1 2.3220 0.2979 2.2347 49 1 3.9869 -0.3103 2.0159 50 1 3.0300 2.1610 3.4555 51 1 4.4595 1.1332 3.7871 52 1 5.7318 2.1371 2.0006 53 1 4.8254 3.5475 2.6367 54 1 4.6255 2.9474 0.0170 55 1 3.1412 3.3796 0.9203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264187437.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:54 Heat of formation + Delta-G solvation = -62.813606 kcal Electronic energy + Delta-G solvation = -32964.222588 eV Core-core repulsion = 29001.681100 eV Total energy + Delta-G solvation = -3962.541488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05067 -39.65157 -38.59246 -37.66163 -37.23936 -34.13132 -33.72968 -32.14253 -31.30015 -29.51238 -28.50237 -27.77840 -27.56359 -26.45500 -25.36056 -23.83526 -22.59137 -22.05368 -21.23234 -20.69894 -20.06002 -18.95677 -18.20227 -17.64279 -17.10872 -16.94797 -16.70974 -16.28248 -15.82694 -15.74125 -15.46625 -15.34525 -15.15382 -14.98538 -14.70337 -14.48784 -14.36319 -14.15552 -14.04533 -13.70829 -13.30472 -13.10050 -12.98978 -12.84155 -12.62426 -12.52309 -12.36490 -12.21533 -12.18541 -12.06347 -12.00725 -11.92778 -11.87434 -11.82815 -11.73342 -11.52892 -11.40768 -11.30123 -11.19667 -11.09304 -10.65705 -9.88366 -9.50523 -8.61441 -7.83615 -5.45288 1.40973 1.43357 1.52896 1.56883 1.90830 2.47937 2.68518 3.27393 3.40831 3.60903 3.66834 3.79394 3.86390 3.89664 3.94975 3.98767 4.08994 4.15650 4.30452 4.35434 4.40438 4.42144 4.49713 4.57470 4.59692 4.63952 4.65784 4.71619 4.78759 4.79946 4.82967 4.87855 4.92096 4.99877 5.05107 5.07803 5.13201 5.17626 5.18498 5.20537 5.30102 5.32862 5.37305 5.39053 5.45423 5.52517 5.56027 5.60034 5.64764 5.74564 5.99929 6.36064 6.51572 7.14313 7.26668 7.84725 8.35384 9.17739 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.003597 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.065897 B = 7782.275071 C = 8539.170476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.381 6.381 3 C 0.089 3.911 4 H 0.113 0.887 5 C 0.475 3.525 6 O -0.566 6.566 7 N -0.598 5.598 8 C 0.087 3.913 9 C -0.135 4.135 10 C -0.114 4.114 11 C -0.111 4.111 12 C 0.137 3.863 13 H 0.051 0.949 14 C 0.177 3.823 15 N -0.614 5.614 16 C 0.178 3.822 17 C -0.267 4.267 18 H 0.059 0.941 19 C -0.047 4.047 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.269 1.269 25 C -0.082 4.082 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.119 4.119 29 C -0.132 4.132 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.037 0.963 43 H -0.003 1.003 44 H 0.014 0.986 45 H 0.028 0.972 46 H 0.249 0.751 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.059 0.941 53 H 0.089 0.911 54 H 0.054 0.946 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 5.646 28.803 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.028 3.972 4 H 0.130 0.870 5 C 0.263 3.737 6 O -0.445 6.445 7 N -0.333 5.333 8 C -0.034 4.034 9 C -0.173 4.173 10 C -0.151 4.151 11 C -0.150 4.150 12 C 0.032 3.968 13 H 0.069 0.931 14 C 0.051 3.949 15 N -0.339 5.339 16 C 0.033 3.967 17 C -0.397 4.397 18 H 0.077 0.923 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.194 1.194 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.169 4.169 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.102 0.898 51 H 0.092 0.908 52 H 0.077 0.923 53 H 0.108 0.892 54 H 0.073 0.927 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.740 4.997 28.175 28.668 hybrid contribution -0.591 -0.247 -2.026 2.124 sum -2.331 4.750 26.150 26.680 Atomic orbital electron populations 1.23040 0.79573 1.04441 1.00316 1.87981 1.21335 1.26226 1.94272 1.22422 0.98040 0.86147 0.90592 0.86991 1.22157 0.76207 0.82352 0.92944 1.90802 1.49965 1.57193 1.46496 1.48426 1.69708 1.05820 1.09329 1.22510 0.99821 0.91114 0.89909 1.22222 0.99285 0.98420 0.97363 1.21512 1.02150 0.96954 0.94504 1.21753 0.96959 0.96271 0.99978 1.21791 0.97967 0.95980 0.81100 0.93060 1.21143 0.97936 0.92061 0.83772 1.44213 1.04392 1.74317 1.10933 1.20546 0.85108 0.96542 0.94510 1.19345 0.91287 1.40601 0.88480 0.92320 1.26123 0.99236 0.99080 0.99787 1.70192 1.24635 1.50109 1.13271 0.85207 0.79242 0.77329 0.78395 1.20503 1.21926 1.19408 1.21785 0.91777 0.98920 0.97692 1.22067 1.02203 0.98383 0.91985 1.22408 0.99782 0.96350 0.97083 1.22498 0.98133 1.00713 0.94322 1.22996 1.00850 0.94549 0.98525 0.88026 0.90560 0.96046 0.90042 0.86781 0.90434 0.87160 0.90464 0.91875 0.93238 0.92625 0.95922 0.94448 0.98442 0.96681 0.95373 0.94159 0.93418 0.90761 0.92380 0.89844 0.90790 0.92264 0.89231 0.92720 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.83 113.37 1.23 1.69 16 2 O -0.38 -10.53 9.16 -131.80 -1.21 -11.74 16 3 C 0.09 2.15 1.60 29.85 0.05 2.20 16 4 H 0.11 1.83 5.61 -2.39 -0.01 1.82 16 5 C 0.48 16.07 6.25 87.66 0.55 16.62 16 6 O -0.57 -26.28 12.27 14.16 0.17 -26.11 16 7 N -0.60 -17.63 2.92 -794.22 -2.32 -19.95 16 8 C 0.09 1.51 5.30 86.51 0.46 1.97 16 9 C -0.14 -2.01 5.36 30.82 0.17 -1.85 16 10 C -0.11 -2.45 5.88 30.62 0.18 -2.27 16 11 C -0.11 -3.63 4.12 30.67 0.13 -3.50 16 12 C 0.14 5.21 3.18 44.98 0.14 5.35 16 13 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 14 C 0.18 8.85 3.58 86.38 0.31 9.16 16 15 N -0.61 -34.43 2.50 -726.91 -1.82 -36.25 16 16 C 0.18 9.65 7.94 127.77 1.01 10.67 16 17 C -0.27 -15.95 9.55 84.03 0.80 -15.15 16 18 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 19 C -0.05 -2.80 5.26 84.86 0.45 -2.35 16 20 N -0.94 -59.41 11.02 21.65 0.24 -59.17 16 21 Si 0.97 47.58 29.56 68.60 2.03 49.61 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 25 C -0.08 -1.78 2.69 -10.07 -0.03 -1.80 16 26 C -0.11 -1.77 6.16 31.32 0.19 -1.58 16 27 C -0.12 -1.27 6.84 31.69 0.22 -1.05 16 28 C -0.12 -1.40 6.91 31.91 0.22 -1.18 16 29 C -0.13 -2.12 4.21 31.67 0.13 -1.98 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.04 7.97 -2.39 -0.02 1.02 16 32 H 0.02 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.33 3.38 -2.39 -0.01 1.33 16 35 H 0.08 1.19 5.40 -2.39 -0.01 1.18 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.05 1.66 7.92 -2.39 -0.02 1.64 16 40 H 0.06 2.13 6.95 -2.39 -0.02 2.12 16 41 H 0.02 1.18 7.14 -2.39 -0.02 1.17 16 42 H 0.04 2.14 6.17 -2.39 -0.01 2.13 16 43 H 0.00 -0.16 7.17 -2.39 -0.02 -0.18 16 44 H 0.01 0.82 7.84 -2.39 -0.02 0.80 16 45 H 0.03 1.31 6.85 -2.38 -0.02 1.30 16 46 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.07 1.16 7.20 -2.39 -0.02 1.14 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 51 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 52 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 53 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 54 H 0.05 1.10 7.27 -2.38 -0.02 1.08 16 55 H 0.10 1.22 3.35 -2.39 -0.01 1.21 16 Total: -1.00 -80.84 396.57 4.16 -76.68 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.86 Total: 11.99 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.21 Total: 14.94 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.90 Total: -115.37 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.03 Total: -37.85 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -80.84 4.16 -76.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264187437.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.865 kcal (2) G-P(sol) polarization free energy of solvation -80.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds