Wall clock time and date at job start Tue Mar 31 2020 22:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99845 * 2 1 4 4 H 1.09005 * 109.47321 * 3.62043 * 3 2 1 5 5 C 1.50704 * 109.46929 * 123.61483 * 3 2 1 6 6 O 1.21286 * 119.99945 * 6.61481 * 5 3 2 7 7 N 1.34766 * 120.00455 * 186.61068 * 5 3 2 8 8 C 1.46928 * 120.62840 * 8.28658 * 7 5 3 9 9 C 1.53192 * 108.77611 * 126.36851 * 8 7 5 10 10 C 1.53045 * 109.31341 * 54.63824 * 9 8 7 11 11 C 1.53038 * 109.53266 * 298.63149 * 10 9 8 12 12 C 1.46927 * 120.63513 * 188.26265 * 7 5 3 13 13 H 1.09000 * 109.58761 * 113.70002 * 12 7 5 14 14 C 1.53003 * 109.58436 * 353.41853 * 12 7 5 15 15 N 1.46501 * 109.46840 * 179.15671 * 14 12 7 16 16 C 1.46501 * 119.99869 * 276.05739 * 15 14 12 17 17 C 1.36930 * 120.00129 * 96.06139 * 15 14 12 18 18 H 1.08007 * 120.00101 * 5.51360 * 17 15 14 19 19 C 1.38818 * 120.00251 * 185.51025 * 17 15 14 20 20 N 1.31617 * 119.99728 * 220.88782 * 19 17 15 21 21 Si 1.86800 * 119.99815 * 40.88512 * 19 17 15 22 22 H 1.48503 * 109.46951 * 266.69688 * 21 19 17 23 23 H 1.48504 * 109.47132 * 26.69586 * 21 19 17 24 24 H 1.48500 * 109.47019 * 146.69465 * 21 19 17 25 25 C 1.52992 * 109.47309 * 243.61477 * 3 2 1 26 26 C 1.54262 * 110.03424 * 54.17566 * 25 3 2 27 27 C 1.54888 * 104.19928 * 217.10427 * 26 25 3 28 28 C 1.54894 * 102.74519 * 37.94042 * 27 26 25 29 29 C 1.53881 * 110.03428 * 297.00863 * 25 3 2 30 30 H 1.09003 * 109.46889 * 304.76644 * 1 2 3 31 31 H 1.08996 * 109.47038 * 64.76322 * 1 2 3 32 32 H 1.09001 * 109.46935 * 184.76617 * 1 2 3 33 33 H 1.08998 * 109.58777 * 246.15420 * 8 7 5 34 34 H 1.09001 * 109.58511 * 6.58232 * 8 7 5 35 35 H 1.09009 * 109.49739 * 174.58379 * 9 8 7 36 36 H 1.08997 * 109.49952 * 294.65003 * 9 8 7 37 37 H 1.09000 * 109.46145 * 58.65055 * 10 9 8 38 38 H 1.09001 * 109.45833 * 178.62803 * 10 9 8 39 39 H 1.08994 * 109.50055 * 301.41291 * 11 10 9 40 40 H 1.09004 * 109.49864 * 181.31287 * 11 10 9 41 41 H 1.08997 * 109.46789 * 59.15483 * 14 12 7 42 42 H 1.08999 * 109.46908 * 299.15433 * 14 12 7 43 43 H 1.09003 * 109.47044 * 215.60357 * 16 15 14 44 44 H 1.08994 * 109.47175 * 335.61097 * 16 15 14 45 45 H 1.08999 * 109.46881 * 95.60987 * 16 15 14 46 46 H 0.97000 * 120.00599 * 5.02855 * 20 19 17 47 47 H 1.09000 * 110.01679 * 175.61569 * 25 3 2 48 48 H 1.08999 * 110.48294 * 335.78469 * 26 25 3 49 49 H 1.09008 * 110.48750 * 98.42335 * 26 25 3 50 50 H 1.09001 * 110.75474 * 279.63067 * 27 26 25 51 51 H 1.09003 * 110.75556 * 156.25774 * 27 26 25 52 52 H 1.08996 * 110.48282 * 203.37750 * 28 27 26 53 53 H 1.08996 * 110.48228 * 80.73838 * 28 27 26 54 54 H 1.08997 * 110.02993 * 238.57019 * 29 25 3 55 55 H 1.08995 * 110.02562 * 359.95116 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2210 2.0546 0.0649 5 6 2.9331 1.4444 1.1833 6 8 3.1723 0.4824 1.8820 7 7 3.4927 2.6376 1.4650 8 6 3.0766 3.8484 0.7442 9 6 2.6729 4.9162 1.7659 10 6 3.8238 5.1353 2.7506 11 6 4.1101 3.8326 3.5010 12 6 4.5301 2.7525 2.4991 13 1 5.4779 3.0286 2.0368 14 6 4.6835 1.4132 3.2228 15 7 5.7323 1.5249 4.2395 16 6 7.1375 1.3485 3.8648 17 6 5.3991 1.7940 5.5402 18 1 4.3607 1.8357 5.8341 19 6 6.3961 2.0131 6.4810 20 7 6.2837 1.5042 7.6896 21 14 7.8971 3.0301 6.0316 22 1 8.9812 2.1311 5.5604 23 1 7.5423 3.9858 4.9517 24 1 8.3611 3.7819 7.2252 25 6 2.8033 1.5107 -1.2921 26 6 1.9051 1.2280 -2.5140 27 6 2.8505 0.5394 -3.5294 28 6 3.7364 -0.3504 -2.6223 29 6 3.9677 0.5071 -1.3610 30 1 -0.3633 0.5860 0.8442 31 1 -0.3633 0.4381 -0.9295 32 1 -0.3633 -1.0241 0.0854 33 1 3.9052 4.2164 0.1392 34 1 2.2268 3.6174 0.1019 35 1 2.4540 5.8504 1.2485 36 1 1.7875 4.5845 2.3082 37 1 4.7154 5.4433 2.2045 38 1 3.5483 5.9120 3.4640 39 1 3.2116 3.5109 4.0274 40 1 4.9142 3.9953 4.2188 41 1 4.9554 0.6407 2.5036 42 1 3.7404 1.1487 3.7011 43 1 7.6698 0.8500 4.6749 44 1 7.1992 0.7415 2.9616 45 1 7.5890 2.3231 3.6791 46 1 5.5417 0.9164 7.9013 47 1 3.1859 2.5303 -1.3371 48 1 1.0878 0.5607 -2.2404 49 1 1.5165 2.1596 -2.9257 50 1 3.4556 1.2775 -4.0558 51 1 2.2836 -0.0700 -4.2332 52 1 4.6844 -0.5707 -3.1130 53 1 3.2149 -1.2726 -2.3663 54 1 4.9154 1.0397 -1.4403 55 1 3.9683 -0.1255 -0.4735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264187438.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:58 Heat of formation + Delta-G solvation = -68.110339 kcal Electronic energy + Delta-G solvation = -32873.475126 eV Core-core repulsion = 28910.703955 eV Total energy + Delta-G solvation = -3962.771172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95906 -39.89073 -38.29813 -37.57960 -37.46788 -34.22287 -33.91114 -32.50519 -31.24981 -29.60291 -28.53281 -27.78157 -27.55288 -26.44157 -25.34744 -23.95304 -22.18444 -21.99512 -21.54478 -20.77102 -19.94974 -19.43280 -17.97803 -17.79629 -17.43831 -16.71628 -16.57654 -16.36949 -16.13962 -15.75706 -15.66258 -15.40092 -15.19201 -15.04137 -14.85887 -14.53282 -14.40043 -14.13706 -13.94898 -13.86086 -13.49076 -13.41681 -13.23967 -13.14514 -12.56973 -12.47920 -12.32274 -12.11109 -12.04662 -11.96509 -11.90640 -11.89885 -11.81522 -11.75918 -11.63012 -11.52845 -11.42842 -11.38056 -11.28830 -10.91451 -10.42952 -9.96664 -9.51076 -9.09495 -8.66778 -5.26042 1.44555 1.54282 1.60403 1.73481 1.82433 2.58465 2.85122 2.94429 3.38907 3.53642 3.61464 3.68345 3.84128 3.87689 3.90410 3.98596 4.05020 4.12337 4.30400 4.31836 4.38684 4.44502 4.50016 4.51678 4.58047 4.59086 4.62324 4.65186 4.73600 4.74366 4.79101 4.80216 4.82119 4.91174 4.92963 4.96589 5.00140 5.05736 5.07797 5.11922 5.15432 5.27925 5.29368 5.32047 5.34129 5.46157 5.47674 5.55359 5.66904 5.77556 6.09213 6.19300 6.51591 6.90607 7.24298 7.67584 8.10338 8.79566 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.003597 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.272229 B = 7782.131818 C = 8144.017667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.380 6.380 3 C 0.086 3.914 4 H 0.112 0.888 5 C 0.492 3.508 6 O -0.564 6.564 7 N -0.602 5.602 8 C 0.098 3.902 9 C -0.127 4.127 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.135 3.865 13 H 0.068 0.932 14 C 0.182 3.818 15 N -0.622 5.622 16 C 0.108 3.892 17 C -0.339 4.339 18 H 0.033 0.967 19 C -0.060 4.060 20 N -0.933 5.933 21 Si 1.081 2.919 22 H -0.277 1.277 23 H -0.270 1.270 24 H -0.306 1.306 25 C -0.093 4.093 26 C -0.114 4.114 27 C -0.116 4.116 28 C -0.120 4.120 29 C -0.122 4.122 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.250 0.750 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.065 0.935 53 H 0.052 0.948 54 H 0.059 0.941 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 7.511 -28.470 31.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.298 6.298 3 C 0.024 3.976 4 H 0.130 0.870 5 C 0.280 3.720 6 O -0.441 6.441 7 N -0.337 5.337 8 C -0.023 4.023 9 C -0.165 4.165 10 C -0.154 4.154 11 C -0.151 4.151 12 C 0.029 3.971 13 H 0.086 0.914 14 C 0.057 3.943 15 N -0.347 5.347 16 C -0.037 4.037 17 C -0.468 4.468 18 H 0.051 0.949 19 C -0.257 4.257 20 N -0.574 5.574 21 Si 0.908 3.092 22 H -0.204 1.204 23 H -0.196 1.196 24 H -0.234 1.234 25 C -0.112 4.112 26 C -0.152 4.152 27 C -0.153 4.153 28 C -0.158 4.158 29 C -0.160 4.160 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.038 0.962 46 H 0.058 0.942 47 H 0.126 0.874 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.083 0.917 53 H 0.070 0.930 54 H 0.078 0.922 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.090 7.443 -27.521 30.243 hybrid contribution -1.545 -1.002 0.811 2.012 sum -11.635 6.441 -26.710 29.837 Atomic orbital electron populations 1.23144 0.79415 1.03810 1.01145 1.88016 1.21215 1.26058 1.94501 1.22137 0.95825 0.87253 0.92342 0.87013 1.21600 0.81669 0.82424 0.86264 1.90785 1.61569 1.40650 1.51144 1.48364 1.39254 1.08210 1.37908 1.22209 1.01941 0.83707 0.94471 1.21920 0.97421 1.00071 0.97122 1.21548 0.99675 0.95593 0.98571 1.21701 1.00087 0.95807 0.97502 1.21918 0.89575 0.97812 0.87786 0.91385 1.21216 0.90031 0.93644 0.89439 1.44655 1.02220 1.82368 1.05492 1.21250 0.84968 0.98418 0.99059 1.19810 0.92619 1.49026 0.85345 0.94923 1.26826 1.03848 1.01692 0.93324 1.70997 1.29978 1.30822 1.25560 0.83688 0.74283 0.76823 0.74448 1.20355 1.19565 1.23418 1.22218 0.95558 1.00853 0.92577 1.22447 0.97632 1.01732 0.93348 1.22451 0.97348 0.98534 0.96986 1.22290 1.00034 0.98248 0.95231 1.22113 0.97923 0.97612 0.98324 0.94161 0.90908 0.89070 0.89008 0.87149 0.87064 0.92718 0.90831 0.91533 0.95239 0.92814 0.93195 0.95707 0.94771 0.92147 0.96208 0.94163 0.87425 0.91216 0.88909 0.90373 0.90726 0.91673 0.92953 0.92181 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.28 113.37 1.17 1.52 16 2 O -0.38 -9.73 8.70 -130.03 -1.13 -10.87 16 3 C 0.09 1.85 1.56 29.85 0.05 1.90 16 4 H 0.11 1.69 6.43 -2.38 -0.02 1.67 16 5 C 0.49 15.59 5.76 87.66 0.50 16.10 16 6 O -0.56 -24.51 11.66 15.90 0.19 -24.33 16 7 N -0.60 -17.03 2.97 -795.01 -2.36 -19.39 16 8 C 0.10 1.62 5.03 86.36 0.43 2.06 16 9 C -0.13 -2.20 6.08 30.67 0.19 -2.02 16 10 C -0.12 -2.89 5.88 30.62 0.18 -2.71 16 11 C -0.11 -4.17 4.72 30.67 0.14 -4.03 16 12 C 0.13 4.95 3.19 44.98 0.14 5.09 16 13 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.18 8.64 3.60 86.38 0.31 8.95 16 15 N -0.62 -32.76 2.60 -726.93 -1.89 -34.65 16 16 C 0.11 5.03 8.55 127.77 1.09 6.13 16 17 C -0.34 -20.56 8.37 84.04 0.70 -19.85 16 18 H 0.03 2.19 8.00 -2.91 -0.02 2.16 16 19 C -0.06 -3.68 4.95 84.86 0.42 -3.26 16 20 N -0.93 -61.45 13.70 21.65 0.30 -61.15 16 21 Si 1.08 54.29 24.66 68.60 1.69 55.98 16 22 H -0.28 -12.98 6.65 99.48 0.66 -12.31 16 23 H -0.27 -12.46 6.93 99.48 0.69 -11.77 16 24 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 25 C -0.09 -1.54 2.59 -10.07 -0.03 -1.57 16 26 C -0.11 -1.33 6.26 31.67 0.20 -1.13 16 27 C -0.12 -1.42 6.91 31.89 0.22 -1.20 16 28 C -0.12 -2.21 6.83 31.67 0.22 -2.00 16 29 C -0.12 -2.74 5.79 31.32 0.18 -2.56 16 30 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 31 H 0.07 0.78 6.90 -2.39 -0.02 0.76 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.13 5.17 -2.39 -0.01 1.12 16 35 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 2.40 7.03 -2.39 -0.02 2.39 16 41 H 0.05 2.44 6.29 -2.39 -0.02 2.43 16 42 H 0.02 1.35 6.81 -2.39 -0.02 1.33 16 43 H 0.03 1.71 5.89 -2.39 -0.01 1.70 16 44 H 0.06 2.47 7.90 -2.39 -0.02 2.45 16 45 H 0.02 0.88 5.84 -2.39 -0.01 0.87 16 46 H 0.25 16.72 8.73 -92.71 -0.81 15.91 16 47 H 0.11 1.32 6.29 -2.39 -0.02 1.30 16 48 H 0.07 0.90 5.41 -2.39 -0.01 0.89 16 49 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 54 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 55 H 0.03 1.07 6.60 -2.39 -0.02 1.06 16 Total: -1.00 -81.65 396.72 3.66 -77.99 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.75 Total: 15.00 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.12 Total: 1.42 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.96 Total: -115.19 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.95 Total: -35.19 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 1.69 Total: 55.98 kcal Total: -81.65 3.66 -77.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264187438.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.876 kcal (2) G-P(sol) polarization free energy of solvation -81.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds