Wall clock time and date at job start Tue Mar 31 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99911 * 2 1 4 4 C 1.53006 * 109.47057 * 184.99370 * 3 2 1 5 5 C 1.53005 * 109.47000 * 174.93081 * 4 3 2 6 6 C 1.50689 * 112.85003 * 316.79594 * 5 4 3 7 7 O 1.21284 * 120.00109 * 136.93920 * 6 5 4 8 8 N 1.34777 * 120.00259 * 316.93797 * 6 5 4 9 9 C 1.46962 * 120.36340 * 5.83236 * 8 6 5 10 10 C 1.51794 * 109.39947 * 291.89849 * 9 8 6 11 11 C 1.53801 * 109.05948 * 287.19124 * 10 9 8 12 12 C 1.52445 * 109.40245 * 77.78996 * 11 10 9 13 13 C 1.53949 * 110.73258 * 246.27387 * 12 11 10 14 14 C 1.52879 * 109.73094 * 44.36275 * 13 12 11 15 15 H 1.09004 * 109.50175 * 312.91717 * 14 13 12 16 16 N 1.46504 * 109.48356 * 192.87180 * 14 13 12 17 17 C 1.36940 * 119.99874 * 85.09185 * 16 14 13 18 18 H 1.07998 * 119.99703 * 359.97438 * 17 16 14 19 19 C 1.38807 * 119.99818 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47305 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47464 * 119.99633 * 21 19 17 24 24 H 1.48501 * 109.46820 * 239.99775 * 21 19 17 25 25 C 1.45340 * 120.36675 * 186.11239 * 8 6 5 26 26 C 1.53776 * 113.60980 * 185.59848 * 5 4 3 27 27 C 1.53788 * 87.08156 * 219.93837 * 26 5 4 28 28 C 1.53786 * 87.16969 * 25.39018 * 27 26 5 29 29 H 1.09002 * 109.47236 * 184.99558 * 1 2 3 30 30 H 1.08999 * 109.47121 * 305.00010 * 1 2 3 31 31 H 1.09002 * 109.46700 * 65.00141 * 1 2 3 32 32 H 1.08995 * 109.47315 * 64.99422 * 3 2 1 33 33 H 1.09004 * 109.46856 * 304.98871 * 3 2 1 34 34 H 1.09004 * 109.46884 * 54.93159 * 4 3 2 35 35 H 1.08993 * 109.46886 * 294.93361 * 4 3 2 36 36 H 1.08996 * 109.53038 * 51.53317 * 9 8 6 37 37 H 1.09004 * 109.53154 * 171.75147 * 9 8 6 38 38 H 1.09000 * 109.60869 * 167.29499 * 10 9 8 39 39 H 1.08997 * 109.58845 * 47.07786 * 10 9 8 40 40 H 1.08997 * 109.48160 * 317.80707 * 11 10 9 41 41 H 1.09000 * 109.48068 * 197.76657 * 11 10 9 42 42 H 1.09003 * 109.22468 * 125.94854 * 12 11 10 43 43 H 1.09006 * 109.18714 * 6.57544 * 12 11 10 44 44 H 1.09003 * 109.42575 * 284.28837 * 13 12 11 45 45 H 1.09002 * 109.43018 * 164.44758 * 13 12 11 46 46 H 0.96994 * 119.99994 * 265.08309 * 16 14 13 47 47 H 0.97001 * 120.00437 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.67096 * 256.38791 * 25 8 6 49 49 H 1.09002 * 109.67450 * 16.91993 * 25 8 6 50 50 H 1.09002 * 113.61892 * 105.39156 * 26 5 4 51 51 H 1.09003 * 113.61755 * 334.48518 * 26 5 4 52 52 H 1.09000 * 113.61474 * 139.98389 * 27 26 5 53 53 H 1.08999 * 113.60942 * 270.80293 * 27 26 5 54 54 H 1.09006 * 113.60763 * 89.15862 * 28 27 26 55 55 H 1.08992 * 113.61411 * 220.05727 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1869 -0.1256 5 6 4.1422 2.5835 -0.2527 6 6 3.3704 3.4774 -1.1887 7 8 3.1555 4.6318 -0.8854 8 7 2.9190 2.9940 -2.3631 9 6 3.0622 1.5669 -2.6833 10 6 4.5316 1.2385 -2.8766 11 6 5.0070 1.8317 -4.2136 12 6 5.2373 3.3297 -4.0496 13 6 4.2270 4.1316 -4.8900 14 6 2.8292 3.5351 -4.7242 15 1 2.8799 2.4521 -4.8372 16 7 1.9363 4.0916 -5.7438 17 6 1.8843 3.5268 -6.9902 18 1 2.5018 2.6716 -7.2217 19 6 1.0380 4.0537 -7.9561 20 7 0.2852 5.0958 -7.6738 21 14 0.9665 3.2830 -9.6562 22 1 1.9028 2.1320 -9.7177 23 1 -0.4153 2.8126 -9.9288 24 1 1.3558 4.2921 -10.6738 25 6 2.2907 3.8795 -3.3293 26 6 5.6562 2.5707 -0.5215 27 6 5.7586 3.7616 0.4461 28 6 4.4667 3.2435 1.0998 29 1 -0.3634 -1.0238 0.0895 30 1 -0.3633 0.5894 0.8418 31 1 -0.3633 0.4343 -0.9314 32 1 1.7612 1.8141 0.9313 33 1 1.6196 1.8770 -0.8420 34 1 3.7773 0.6002 -1.0105 35 1 3.9308 0.6941 0.7603 36 1 2.6664 0.9679 -1.8632 37 1 2.5138 1.3418 -3.5981 38 1 4.6660 0.1569 -2.8897 39 1 5.1124 1.6679 -2.0604 40 1 4.2479 1.6620 -4.9771 41 1 5.9384 1.3514 -4.5136 42 1 6.2487 3.5750 -4.3739 43 1 5.1225 3.5969 -2.9991 44 1 4.5161 4.0913 -5.9402 45 1 4.2204 5.1692 -4.5562 46 1 1.3820 4.8598 -5.5359 47 1 -0.3066 5.4638 -8.3486 48 1 1.2101 3.7383 -3.3079 49 1 2.5308 4.9151 -3.0884 50 1 5.9194 2.8195 -1.5496 51 1 6.1560 1.6714 -0.1614 52 1 6.6280 3.7178 1.1021 53 1 5.6437 4.7303 -0.0403 54 1 4.6407 2.5285 1.9040 55 1 3.7708 4.0347 1.3788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264684064.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:33 Heat of formation + Delta-G solvation = -21.741999 kcal Electronic energy + Delta-G solvation = -33361.707213 eV Core-core repulsion = 29400.946723 eV Total energy + Delta-G solvation = -3960.760489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.86302 -39.67969 -38.95229 -38.22836 -36.64745 -35.17562 -34.18205 -32.73935 -31.44348 -29.15053 -27.92262 -27.28688 -27.04008 -26.18176 -25.42335 -23.94999 -23.14492 -22.70870 -21.87070 -20.32886 -19.34709 -19.13785 -18.10426 -17.57647 -17.37786 -16.98688 -16.91935 -16.30480 -15.99172 -15.91909 -15.76749 -15.26203 -15.15968 -15.10233 -14.97666 -14.67569 -14.30015 -14.25136 -13.76711 -13.43030 -13.36254 -13.21310 -13.02161 -12.93504 -12.81961 -12.69047 -12.47984 -12.34252 -12.20453 -12.10074 -12.08429 -11.84267 -11.77729 -11.64268 -11.51673 -11.40496 -11.27027 -11.19614 -10.95101 -10.69486 -10.66464 -10.60311 -9.52401 -9.01859 -7.95035 -5.24769 1.46379 1.47114 1.54248 1.57075 1.95382 2.56165 2.69312 3.33295 3.38577 3.49071 3.56393 3.77705 3.87619 3.89507 3.98980 4.01245 4.06179 4.08284 4.16325 4.23006 4.28367 4.37955 4.45052 4.48477 4.49151 4.54265 4.56944 4.59573 4.69317 4.77152 4.80222 4.83016 4.83952 4.84956 4.90921 4.96970 4.99706 5.07964 5.09579 5.15466 5.19417 5.23894 5.26133 5.33308 5.42008 5.45755 5.46316 5.51306 5.58062 5.70642 6.12839 6.25985 6.44879 7.15561 7.31564 8.04780 8.28868 9.28880 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003777 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.504420 B = 7412.422990 C = 8236.254521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.045 3.955 4 C -0.118 4.118 5 C -0.101 4.101 6 C 0.532 3.468 7 O -0.583 6.583 8 N -0.587 5.587 9 C 0.067 3.933 10 C -0.166 4.166 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.127 4.127 14 C 0.161 3.839 15 H 0.078 0.922 16 N -0.737 5.737 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.297 1.297 25 C 0.118 3.882 26 C -0.120 4.120 27 C -0.142 4.142 28 C -0.114 4.114 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.369 0.631 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.061 0.939 50 H 0.079 0.921 51 H 0.133 0.867 52 H 0.095 0.905 53 H 0.054 0.946 54 H 0.120 0.880 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.606 -13.801 20.038 26.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.031 4.031 4 C -0.154 4.154 5 C -0.104 4.104 6 C 0.322 3.678 7 O -0.464 6.464 8 N -0.318 5.318 9 C -0.054 4.054 10 C -0.203 4.203 11 C -0.160 4.160 12 C -0.149 4.149 13 C -0.167 4.167 14 C 0.052 3.948 15 H 0.096 0.904 16 N -0.377 5.377 17 C -0.363 4.363 18 H 0.097 0.903 19 C -0.268 4.268 20 N -0.623 5.623 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.224 1.224 25 C -0.007 4.007 26 C -0.157 4.157 27 C -0.179 4.179 28 C -0.152 4.152 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.200 0.800 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.151 0.849 52 H 0.113 0.887 53 H 0.072 0.928 54 H 0.138 0.862 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.620 -13.505 20.037 26.812 hybrid contribution -1.364 1.323 -1.525 2.436 sum 10.256 -12.182 18.512 24.419 Atomic orbital electron populations 1.22908 0.80056 1.03999 1.00203 1.87808 1.20790 1.27581 1.95481 1.22829 0.95227 0.84926 1.00152 1.22101 0.91977 0.94769 1.06593 1.21977 0.96865 0.94701 0.96903 1.20541 0.78265 0.87421 0.81603 1.90662 1.59530 1.20680 1.75495 1.47716 1.58264 1.09748 1.16106 1.22680 0.99041 0.80000 1.03633 1.22735 0.95279 1.03153 0.99169 1.21773 1.01882 0.94380 0.97949 1.21701 0.97863 0.95933 0.99414 1.22263 0.96947 0.98296 0.99191 1.21066 0.89137 0.98138 0.86416 0.90421 1.42578 1.48542 1.36498 1.10061 1.19595 1.18010 1.09610 0.89101 0.90312 1.25547 0.99852 0.99198 1.02177 1.69840 1.30491 1.27059 1.34872 0.85105 0.77187 0.77724 0.79962 1.18647 1.22142 1.22434 1.21436 0.96074 0.94428 0.88756 1.23241 0.90784 1.01061 1.00565 1.22808 0.98713 0.97457 0.98942 1.22990 0.97496 1.00127 0.94578 0.87635 0.93533 0.94612 0.93356 0.94190 0.87051 0.87427 0.86503 0.90753 0.87798 0.87266 0.92733 0.90235 0.92086 0.92251 0.93892 0.95049 0.80012 0.94149 0.93376 0.92044 0.90311 0.84865 0.88694 0.92757 0.86209 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -7.98 10.55 -148.98 -1.57 -9.56 16 3 C 0.05 0.91 4.41 71.98 0.32 1.23 16 4 C -0.12 -1.79 4.25 30.60 0.13 -1.66 16 5 C -0.10 -1.90 0.42 -52.35 -0.02 -1.93 16 6 C 0.53 15.31 4.10 87.65 0.36 15.67 16 7 O -0.58 -21.97 15.02 -3.04 -0.05 -22.01 16 8 N -0.59 -16.98 1.09 -824.98 -0.90 -17.88 16 9 C 0.07 1.54 4.25 85.89 0.37 1.91 16 10 C -0.17 -2.95 3.97 30.47 0.12 -2.82 16 11 C -0.12 -2.80 5.49 30.68 0.17 -2.64 16 12 C -0.11 -3.07 5.24 30.73 0.16 -2.91 16 13 C -0.13 -4.74 5.33 30.87 0.16 -4.58 16 14 C 0.16 6.39 2.29 45.10 0.10 6.49 16 15 H 0.08 2.95 3.29 -2.38 -0.01 2.95 16 16 N -0.74 -37.66 5.12 -322.42 -1.65 -39.31 16 17 C -0.23 -12.71 9.90 84.03 0.83 -11.88 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 20 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 21 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 25 C 0.12 4.39 5.45 86.74 0.47 4.87 16 26 C -0.12 -1.72 5.22 31.12 0.16 -1.56 16 27 C -0.14 -2.42 7.70 31.12 0.24 -2.18 16 28 C -0.11 -1.99 7.00 31.18 0.22 -1.77 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.99 5.12 -2.38 -0.01 0.98 16 34 H 0.11 1.52 3.82 -2.38 -0.01 1.51 16 35 H 0.11 1.14 7.85 -2.39 -0.02 1.13 16 36 H 0.12 2.35 2.81 -2.39 -0.01 2.34 16 37 H 0.07 1.98 6.06 -2.38 -0.01 1.96 16 38 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.11 1.69 1.80 -2.39 0.00 1.69 16 40 H 0.05 1.53 5.47 -2.39 -0.01 1.51 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.64 3.71 -2.38 -0.01 1.63 16 44 H 0.04 1.77 8.11 -2.39 -0.02 1.75 16 45 H 0.03 1.26 7.87 -2.39 -0.02 1.24 16 46 H 0.37 20.71 7.80 -92.71 -0.72 19.99 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.06 2.56 6.87 -2.39 -0.02 2.54 16 50 H 0.08 1.34 4.54 -2.39 -0.01 1.33 16 51 H 0.13 0.99 8.10 -2.39 -0.02 0.97 16 52 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.05 1.28 7.86 -2.39 -0.02 1.26 16 54 H 0.12 1.31 7.90 -2.38 -0.02 1.29 16 55 H 0.05 1.23 7.51 -2.39 -0.02 1.21 16 Total: -1.00 -71.45 383.08 3.85 -67.61 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: 0.19 Total: 38.99 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.51 Total: -5.97 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -2.27 Total: -117.16 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.62 Total: -31.57 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -71.45 3.85 -67.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264684064.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.863 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds