Wall clock time and date at job start Tue Mar 31 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00441 * 2 1 4 4 C 1.52997 * 109.47341 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47075 * 184.22331 * 4 3 2 6 6 C 1.50702 * 110.43683 * 293.35866 * 5 4 3 7 7 O 1.21277 * 119.99765 * 114.94138 * 6 5 4 8 8 N 1.34773 * 120.00075 * 294.93227 * 6 5 4 9 9 C 1.46500 * 119.99775 * 354.72026 * 8 6 5 10 10 C 1.46501 * 120.00119 * 174.71649 * 8 6 5 11 11 C 1.53036 * 109.46020 * 119.97522 * 10 8 6 12 12 C 1.53161 * 109.32818 * 181.38627 * 11 10 8 13 13 N 1.46930 * 108.76859 * 305.35588 * 12 11 10 14 14 C 1.36934 * 120.63269 * 233.58466 * 13 12 11 15 15 H 1.08007 * 119.99654 * 30.66450 * 14 13 12 16 16 C 1.38809 * 120.00049 * 210.65864 * 14 13 12 17 17 N 1.31612 * 120.00363 * 11.52833 * 16 14 13 18 18 Si 1.86801 * 119.99772 * 191.52237 * 16 14 13 19 19 H 1.48502 * 109.47464 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47033 * 120.00498 * 18 16 14 21 21 H 1.48499 * 109.47172 * 240.00227 * 18 16 14 22 22 C 1.46931 * 118.73781 * 53.60815 * 13 12 11 23 23 C 1.53040 * 109.46031 * 240.03132 * 10 8 6 24 24 C 1.54890 * 110.59781 * 55.97919 * 5 4 3 25 25 C 1.54890 * 102.74924 * 156.67441 * 24 5 4 26 26 C 1.54267 * 104.19729 * 322.05510 * 25 24 5 27 27 C 1.53878 * 106.59584 * 23.61254 * 26 25 24 28 28 H 1.08996 * 109.47518 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46993 * 300.00240 * 1 2 3 30 30 H 1.09002 * 109.46816 * 59.99188 * 1 2 3 31 31 H 1.09002 * 109.46745 * 59.99650 * 3 2 1 32 32 H 1.09001 * 109.47339 * 300.00606 * 3 2 1 33 33 H 1.09000 * 109.46823 * 64.22818 * 4 3 2 34 34 H 1.09000 * 109.47244 * 304.22799 * 4 3 2 35 35 H 1.09002 * 109.47340 * 264.86898 * 9 8 6 36 36 H 1.09005 * 109.47522 * 24.87256 * 9 8 6 37 37 H 1.09006 * 109.46823 * 144.87256 * 9 8 6 38 38 H 1.08995 * 109.45838 * 0.02562 * 10 8 6 39 39 H 1.09004 * 109.49841 * 301.32479 * 11 10 8 40 40 H 1.09002 * 109.49593 * 61.42279 * 11 10 8 41 41 H 1.09000 * 109.59113 * 185.57114 * 12 11 10 42 42 H 1.08997 * 109.70920 * 65.21050 * 12 11 10 43 43 H 0.97005 * 120.00547 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.58419 * 186.60591 * 22 13 12 45 45 H 1.08996 * 109.70254 * 66.25037 * 22 13 12 46 46 H 1.09004 * 109.49624 * 298.57903 * 23 10 8 47 47 H 1.09002 * 109.49754 * 58.67474 * 23 10 8 48 48 H 1.09005 * 110.75418 * 274.98417 * 24 5 4 49 49 H 1.08993 * 110.75710 * 38.35840 * 24 5 4 50 50 H 1.09000 * 110.48504 * 203.37989 * 25 24 5 51 51 H 1.09002 * 110.48795 * 80.73498 * 25 24 5 52 52 H 1.08994 * 110.03448 * 264.32881 * 26 25 24 53 53 H 1.09000 * 110.03536 * 142.89224 * 26 25 24 54 54 H 1.09000 * 110.03075 * 240.71407 * 27 26 25 55 55 H 1.08994 * 110.03704 * 119.28628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1575 2.5783 0.1069 6 6 3.8680 3.3798 -1.1360 7 8 3.1742 4.3724 -1.0695 8 7 4.3802 2.9938 -2.3214 9 6 5.3109 1.8642 -2.3841 10 6 4.0061 3.7038 -3.5471 11 6 5.2596 4.2937 -4.1973 12 6 4.8610 5.0643 -5.4595 13 7 4.0907 4.1709 -6.3354 14 6 4.4595 3.9856 -7.6411 15 1 5.5002 4.0504 -7.9226 16 6 3.4959 3.7142 -8.6026 17 7 2.2198 3.8572 -8.3142 18 14 4.0105 3.1462 -10.3062 19 1 5.4917 3.0653 -10.3747 20 1 3.4289 1.8071 -10.5781 21 1 3.5198 4.1141 -11.3199 22 6 2.9168 3.4805 -5.7839 23 6 3.3374 2.7277 -4.5178 24 6 3.6304 3.3159 1.3627 25 6 4.7449 4.3548 1.6419 26 6 6.0524 3.6038 1.3160 27 6 5.6790 2.4743 0.3400 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8628 0.7102 -0.9246 34 1 3.8518 0.5797 0.8506 35 1 6.3354 2.2357 -2.3595 36 1 5.1423 1.2066 -1.5313 37 1 5.1476 1.3098 -3.3084 38 1 3.3113 4.5074 -3.3035 39 1 5.7483 4.9711 -3.4969 40 1 5.9445 3.4886 -4.4636 41 1 5.7573 5.4024 -5.9796 42 1 4.2501 5.9250 -5.1872 43 1 1.5464 3.6680 -8.9863 44 1 2.5304 2.7736 -6.5180 45 1 2.1447 4.2090 -5.5364 46 1 4.0405 1.9374 -4.7810 47 1 2.4577 2.2903 -4.0455 48 1 2.6838 3.8128 1.1500 49 1 3.5264 2.6265 2.2005 50 1 4.7300 4.6582 2.6887 51 1 4.6303 5.2214 0.9908 52 1 6.4790 3.1841 2.2270 53 1 6.7656 4.2817 0.8471 54 1 5.9244 1.5065 0.7774 55 1 6.2108 2.6040 -0.6025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265201973.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:40 Heat of formation + Delta-G solvation = -80.718759 kcal Electronic energy + Delta-G solvation = -32228.632791 eV Core-core repulsion = 28265.314877 eV Total energy + Delta-G solvation = -3963.317914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07685 -39.63703 -38.77073 -37.93235 -36.67521 -34.45283 -33.46848 -31.97917 -31.41074 -29.71016 -28.86612 -27.95189 -27.07556 -26.64933 -24.37083 -23.92005 -23.76981 -22.32835 -21.31701 -20.52457 -19.64601 -18.71891 -17.70955 -17.46136 -17.39468 -17.08002 -16.78703 -16.38445 -15.94073 -15.86942 -15.58319 -15.42005 -15.34390 -14.94626 -14.78265 -14.34504 -14.22186 -14.15357 -14.05274 -13.79406 -13.37717 -13.22773 -12.98964 -12.95563 -12.67847 -12.56202 -12.50995 -12.41723 -12.23925 -12.10006 -12.00492 -11.94572 -11.92974 -11.85962 -11.72487 -11.54364 -11.48466 -11.31642 -11.25137 -10.69937 -10.60819 -10.48405 -9.56857 -8.69805 -7.88549 -5.39886 1.46695 1.47870 1.58883 1.63068 2.00107 2.49807 2.69074 3.28448 3.37078 3.53276 3.62659 3.66257 3.84875 3.95551 4.03508 4.05608 4.16639 4.24187 4.31021 4.33735 4.41293 4.44661 4.46487 4.49337 4.53861 4.56628 4.60888 4.63403 4.67132 4.69111 4.79603 4.80575 4.83606 4.89078 4.94740 5.01368 5.02330 5.03677 5.09109 5.11182 5.12051 5.15576 5.26944 5.28916 5.35698 5.44141 5.51759 5.61839 5.62097 5.67627 6.12411 6.38449 6.48050 7.12500 7.20270 7.80799 8.35331 9.18273 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003199 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.267391 B = 8750.120914 C = 9940.439436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.060 3.940 4 C -0.105 4.105 5 C -0.072 4.072 6 C 0.520 3.480 7 O -0.586 6.586 8 N -0.604 5.604 9 C 0.055 3.945 10 C 0.156 3.844 11 C -0.119 4.119 12 C 0.144 3.856 13 N -0.608 5.608 14 C -0.262 4.262 15 H 0.071 0.929 16 C -0.051 4.051 17 N -0.939 5.939 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.294 1.294 22 C 0.184 3.816 23 C -0.126 4.126 24 C -0.103 4.103 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.122 4.122 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.004 0.996 43 H 0.250 0.750 44 H 0.061 0.939 45 H -0.014 1.014 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.100 0.900 50 H 0.081 0.919 51 H 0.037 0.963 52 H 0.089 0.911 53 H 0.057 0.943 54 H 0.108 0.892 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -8.736 23.364 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.076 4.076 6 C 0.309 3.691 7 O -0.466 6.466 8 N -0.335 5.335 9 C -0.086 4.086 10 C 0.052 3.948 11 C -0.158 4.158 12 C 0.018 3.982 13 N -0.331 5.331 14 C -0.392 4.392 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.585 5.585 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.216 1.216 21 H -0.221 1.221 22 C 0.057 3.943 23 C -0.166 4.166 24 C -0.140 4.140 25 C -0.164 4.164 26 C -0.159 4.159 27 C -0.159 4.159 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.022 0.978 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.004 0.996 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.119 0.881 50 H 0.100 0.900 51 H 0.056 0.944 52 H 0.108 0.892 53 H 0.076 0.924 54 H 0.127 0.873 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.463 -8.410 23.278 25.581 hybrid contribution -0.896 0.638 -1.576 1.922 sum 5.567 -7.771 21.703 23.715 Atomic orbital electron populations 1.22913 0.79883 1.03965 1.00350 1.87791 1.21082 1.28074 1.95503 1.22575 0.95000 0.84364 0.99687 1.21779 0.92283 0.94569 1.05560 1.21572 0.99221 0.94584 0.92193 1.21111 0.78202 0.84537 0.85207 1.90645 1.40928 1.28656 1.86364 1.48011 1.46117 1.33367 1.06025 1.22508 0.92922 0.88478 1.04710 1.20732 0.96559 0.94100 0.83376 1.22113 0.96732 1.00229 0.96761 1.20995 0.94946 0.91358 0.90939 1.44295 1.31107 1.49662 1.08086 1.19586 0.92185 1.43072 0.84360 0.91115 1.25950 0.95372 1.01714 1.01532 1.70167 1.00304 1.53283 1.34779 0.85139 0.78269 0.77071 0.79554 1.18676 1.21602 1.22086 1.20489 0.87730 0.93799 0.92268 1.22278 0.99631 0.98495 0.96216 1.22484 0.98407 0.97700 0.95438 1.22341 0.94974 0.97597 1.01489 1.22146 0.96849 0.96897 0.99960 1.22623 0.90612 1.01470 1.01172 0.87779 0.92897 0.94835 0.92136 0.96325 0.89621 0.86971 0.90607 0.87399 0.91252 0.92174 0.91335 0.90828 0.91805 0.97774 0.94103 0.92039 0.99584 0.91260 0.93034 0.92795 0.88143 0.90023 0.94375 0.89228 0.92399 0.87347 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -9.23 10.70 -148.98 -1.59 -10.82 16 3 C 0.06 1.35 5.52 71.98 0.40 1.74 16 4 C -0.10 -1.82 4.24 30.59 0.13 -1.69 16 5 C -0.07 -1.41 0.27 -51.85 -0.01 -1.42 16 6 C 0.52 15.18 5.47 87.66 0.48 15.66 16 7 O -0.59 -22.47 14.72 -3.02 -0.04 -22.51 16 8 N -0.60 -17.14 2.75 -822.44 -2.26 -19.40 16 9 C 0.05 1.09 7.47 127.77 0.95 2.05 16 10 C 0.16 5.64 2.48 45.02 0.11 5.75 16 11 C -0.12 -4.11 5.34 30.66 0.16 -3.95 16 12 C 0.14 6.19 6.52 86.35 0.56 6.75 16 13 N -0.61 -31.19 2.99 -699.16 -2.09 -33.28 16 14 C -0.26 -14.43 9.59 84.03 0.81 -13.62 16 15 H 0.07 3.75 7.86 -2.91 -0.02 3.72 16 16 C -0.05 -2.84 5.03 84.86 0.43 -2.41 16 17 N -0.94 -56.46 11.05 21.65 0.24 -56.23 16 18 Si 0.97 44.80 29.57 68.60 2.03 46.82 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 C 0.18 9.27 5.26 86.36 0.45 9.72 16 23 C -0.13 -4.98 5.29 30.67 0.16 -4.82 16 24 C -0.10 -1.95 4.22 31.89 0.13 -1.82 16 25 C -0.13 -2.33 6.55 31.67 0.21 -2.13 16 26 C -0.12 -1.71 6.80 31.32 0.21 -1.50 16 27 C -0.12 -1.67 4.77 31.32 0.15 -1.52 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.24 6.84 -2.39 -0.02 1.23 16 32 H 0.02 0.53 7.62 -2.39 -0.02 0.51 16 33 H 0.09 1.51 5.36 -2.39 -0.01 1.49 16 34 H 0.11 1.38 7.98 -2.39 -0.02 1.36 16 35 H 0.08 1.26 7.17 -2.39 -0.02 1.24 16 36 H 0.11 1.60 3.37 -2.38 -0.01 1.59 16 37 H 0.07 1.48 6.48 -2.38 -0.02 1.47 16 38 H 0.06 2.60 6.91 -2.39 -0.02 2.58 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.39 7.72 -2.39 -0.02 2.37 16 41 H 0.06 2.61 7.93 -2.39 -0.02 2.60 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 44 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 45 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H 0.07 2.59 6.76 -2.38 -0.02 2.57 16 47 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.05 1.32 7.08 -2.38 -0.02 1.31 16 49 H 0.10 1.36 8.06 -2.39 -0.02 1.34 16 50 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.04 0.95 7.92 -2.39 -0.02 0.93 16 52 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.11 0.87 7.73 -2.39 -0.02 0.85 16 55 H 0.08 1.15 4.84 -2.39 -0.01 1.14 16 Total: -1.00 -72.01 402.35 3.72 -68.29 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.86 Total: 18.62 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.59 Total: 8.50 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.11 Total: -108.90 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.64 Total: -33.33 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.01 3.72 -68.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265201973.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.430 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds