Wall clock time and date at job start Tue Mar 31 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46895 * 2 1 4 4 C 1.42905 * 113.99524 * 174.96423 * 3 2 1 5 5 H 1.08999 * 109.47025 * 344.81146 * 4 3 2 6 6 C 1.53001 * 109.46716 * 224.81504 * 4 3 2 7 7 C 1.50705 * 109.47191 * 65.00429 * 6 4 3 8 8 O 1.21288 * 119.99615 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00393 * 179.97438 * 7 6 4 10 10 C 1.46497 * 120.00278 * 179.97438 * 9 7 6 11 11 H 1.08996 * 115.56491 * 350.71201 * 10 9 7 12 12 C 1.53035 * 117.50130 * 136.41389 * 10 9 7 13 13 C 1.52817 * 117.50247 * 204.99776 * 10 9 7 14 14 C 1.53178 * 117.71640 * 0.14550 * 13 10 9 15 15 C 1.53351 * 108.76760 * 201.12039 * 14 13 10 16 16 N 1.46853 * 108.80977 * 308.68314 * 15 14 13 17 17 C 1.36935 * 120.37982 * 236.87974 * 16 15 14 18 18 H 1.07995 * 120.00183 * 30.92841 * 17 16 15 19 19 C 1.38814 * 119.99597 * 210.93270 * 17 16 15 20 20 N 1.31618 * 120.00454 * 12.74236 * 19 17 16 21 21 Si 1.86806 * 119.99862 * 192.74784 * 19 17 16 22 22 H 1.48494 * 109.47343 * 89.99689 * 21 19 17 23 23 H 1.48496 * 109.47201 * 209.99891 * 21 19 17 24 24 H 1.48511 * 109.46880 * 329.99498 * 21 19 17 25 25 C 1.46837 * 119.23342 * 56.90158 * 16 15 14 26 26 C 1.53194 * 117.71201 * 144.90316 * 13 10 9 27 27 C 1.52997 * 109.47270 * 104.81929 * 4 3 2 28 28 C 1.52996 * 109.47097 * 185.59112 * 27 4 3 29 29 C 1.53001 * 109.47175 * 305.59297 * 27 4 3 30 30 H 1.09002 * 109.46616 * 59.99724 * 1 2 3 31 31 H 1.08991 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47179 * 300.00737 * 1 2 3 33 33 H 1.08994 * 109.47057 * 239.99971 * 2 1 3 34 34 H 1.09002 * 109.46726 * 119.99731 * 2 1 3 35 35 H 1.08999 * 109.47474 * 305.00182 * 6 4 3 36 36 H 1.09003 * 109.47243 * 184.99740 * 6 4 3 37 37 H 0.97003 * 119.99652 * 359.97438 * 9 7 6 38 38 H 1.08997 * 117.50438 * 0.02562 * 12 10 9 39 39 H 1.09000 * 117.53236 * 214.94664 * 12 10 9 40 40 H 1.09003 * 109.58896 * 81.33521 * 14 13 10 41 41 H 1.08996 * 109.58780 * 320.90772 * 14 13 10 42 42 H 1.08997 * 109.58024 * 188.88541 * 15 14 13 43 43 H 1.08996 * 109.58187 * 68.48068 * 15 14 13 44 44 H 0.96993 * 120.00177 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.58188 * 62.90182 * 25 16 15 46 46 H 1.09001 * 109.57556 * 183.30118 * 25 16 15 47 47 H 1.09003 * 109.58741 * 39.09812 * 26 13 10 48 48 H 1.09003 * 109.58363 * 278.67118 * 26 13 10 49 49 H 1.09006 * 109.47430 * 65.59007 * 27 4 3 50 50 H 1.08998 * 109.47262 * 60.00282 * 28 27 4 51 51 H 1.09005 * 109.47001 * 179.97438 * 28 27 4 52 52 H 1.08998 * 109.47147 * 299.99923 * 28 27 4 53 53 H 1.09005 * 109.47034 * 65.92168 * 29 27 4 54 54 H 1.09000 * 109.47239 * 185.92336 * 29 27 4 55 55 H 1.09004 * 109.46770 * 305.92498 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 0.1146 5 1 3.8417 0.5106 0.4473 6 6 3.7694 2.5519 1.1318 7 6 3.2917 2.1325 2.4982 8 8 2.7314 1.0667 2.6439 9 7 3.4871 2.9416 3.5581 10 6 3.0222 2.5340 4.8863 11 1 2.3929 1.6445 4.9119 12 6 3.9673 2.7653 6.0675 13 6 2.7243 3.6387 5.8993 14 6 2.9296 5.0894 5.4525 15 6 3.0977 5.9698 6.6968 16 7 1.9864 5.7034 7.6190 17 6 1.1727 6.7229 8.0358 18 1 0.9849 7.5642 7.3853 19 6 0.5894 6.6749 9.2946 20 7 1.0049 5.7935 10.1794 21 14 -0.7855 7.8612 9.7327 22 1 -2.0938 7.2561 9.3762 23 1 -0.7509 8.1424 11.1903 24 1 -0.6045 9.1284 8.9797 25 6 1.7580 4.3312 8.0894 26 6 1.5628 3.4176 6.8735 27 6 4.0198 1.8294 -1.2468 28 6 5.5471 1.8155 -1.1577 29 6 3.5607 0.8133 -2.2945 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2800 3.4829 0.8457 36 1 4.8490 2.7010 1.1543 37 1 3.9355 3.7938 3.4416 38 1 4.9347 3.2210 5.8564 39 1 3.9598 2.0283 6.8705 40 1 2.0617 5.4228 4.8835 41 1 3.8237 5.1578 4.8329 42 1 3.0868 7.0200 6.4054 43 1 4.0428 5.7342 7.1860 44 1 0.5971 5.7598 11.0587 45 1 2.6201 3.9941 8.6650 46 1 0.8654 4.3032 8.7144 47 1 1.5501 2.3767 7.1968 48 1 0.6214 3.6609 6.3808 49 1 3.6816 2.8251 -1.5337 50 1 5.8853 0.8198 -0.8709 51 1 5.9700 2.0770 -2.1278 52 1 5.8741 2.5394 -0.4113 53 1 2.4828 0.8968 -2.4338 54 1 4.0657 1.0126 -3.2397 55 1 3.8064 -0.1934 -1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265328293.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:40 Heat of formation + Delta-G solvation = -76.509425 kcal Electronic energy + Delta-G solvation = -30561.395034 eV Core-core repulsion = 26598.259651 eV Total energy + Delta-G solvation = -3963.135383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23418 -40.15158 -39.02806 -37.07956 -36.02328 -34.45414 -33.39342 -32.42685 -31.67189 -30.93514 -29.84622 -27.84624 -26.25384 -25.42925 -24.05154 -23.65671 -23.13673 -22.31904 -21.33111 -20.95734 -19.80576 -18.50128 -17.97102 -17.93341 -17.30604 -16.77384 -16.67938 -15.99044 -15.73243 -15.66574 -15.28826 -15.19256 -14.97480 -14.78005 -14.60864 -14.37321 -14.15628 -13.90498 -13.76382 -13.47825 -13.25790 -13.08957 -13.02869 -12.93622 -12.88106 -12.86102 -12.60949 -12.57936 -12.44736 -12.26191 -12.08989 -11.98569 -11.90041 -11.80141 -11.62266 -11.47390 -11.37223 -11.25633 -10.90926 -10.64158 -10.48743 -10.25595 -9.61018 -8.58754 -7.84747 -5.35768 1.46057 1.47652 1.56063 1.65907 2.13123 2.50934 2.81161 2.97143 3.30298 3.62597 3.68372 3.77163 3.82274 3.89783 4.00103 4.05897 4.13852 4.15508 4.24486 4.30260 4.41856 4.48738 4.53270 4.53726 4.55594 4.63478 4.73552 4.75199 4.82110 4.84928 4.88042 4.92113 4.93750 4.99287 5.02882 5.03503 5.07938 5.09790 5.10625 5.18046 5.23866 5.28773 5.32022 5.38978 5.44691 5.47164 5.54356 5.59889 5.65609 5.79463 6.40647 6.43306 6.60243 7.17467 7.31890 7.88991 8.40307 9.19464 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.002196 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.332763 B =12748.884081 C =13143.430464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 O -0.392 6.392 4 C 0.109 3.891 5 H 0.057 0.943 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.576 6.576 9 N -0.690 5.690 10 C 0.088 3.912 11 H 0.113 0.887 12 C -0.168 4.168 13 C -0.117 4.117 14 C -0.081 4.081 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.182 3.818 26 C -0.095 4.095 27 C -0.108 4.108 28 C -0.148 4.148 29 C -0.145 4.145 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.413 0.587 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.249 0.751 45 H -0.001 1.001 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.080 0.920 50 H 0.053 0.947 51 H 0.068 0.932 52 H 0.069 0.931 53 H 0.050 0.950 54 H 0.067 0.933 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.813 -9.734 -25.070 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.312 6.312 4 C 0.050 3.950 5 H 0.075 0.925 6 C -0.182 4.182 7 C 0.302 3.698 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.019 4.019 11 H 0.131 0.869 12 C -0.207 4.207 13 C -0.118 4.118 14 C -0.120 4.120 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.056 3.944 26 C -0.134 4.134 27 C -0.126 4.126 28 C -0.205 4.205 29 C -0.203 4.203 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.251 0.749 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.087 0.913 52 H 0.088 0.912 53 H 0.069 0.931 54 H 0.086 0.914 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.256 -10.328 -24.851 28.459 hybrid contribution -0.687 0.622 1.116 1.451 sum 8.569 -9.705 -23.735 27.036 Atomic orbital electron populations 1.21721 0.93895 1.02793 1.02033 1.22527 0.95531 0.83596 0.99724 1.87820 1.21830 1.27180 1.94354 1.21943 0.81478 0.97562 0.93998 0.92499 1.22108 1.05006 1.01656 0.89410 1.21204 0.77948 0.83687 0.86991 1.90654 1.43724 1.24936 1.86252 1.45356 1.59906 1.22701 1.06107 1.21540 1.01564 0.99108 0.79677 0.86921 1.23589 0.95103 1.02496 0.99506 1.21793 0.97563 0.93009 0.99473 1.21436 1.01190 0.91941 0.97466 1.21019 0.89524 0.97410 0.90125 1.44216 1.31925 1.03766 1.53340 1.19516 1.21852 1.01287 0.96469 0.91769 1.25879 1.02925 1.00541 0.95346 1.70138 1.43525 1.39362 1.05115 0.85277 0.79345 0.79216 0.76672 1.21431 1.22083 1.19194 1.20528 0.98490 0.82982 0.92441 1.21632 0.96253 0.98960 0.96542 1.21525 0.96574 1.00733 0.93805 1.21902 0.93217 1.02370 1.03046 1.21819 1.01243 0.98442 0.98763 0.91627 0.89794 0.93974 0.92293 0.94516 0.86789 0.84547 0.74921 0.87051 0.88500 0.92778 0.89472 0.92658 0.96357 0.94148 0.98291 0.92678 0.91876 0.93731 0.90153 0.92739 0.91279 0.91190 0.93071 0.91396 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 10.28 71.98 0.74 -2.16 16 2 C 0.06 1.34 5.77 71.98 0.42 1.75 16 3 O -0.39 -9.09 8.71 -135.19 -1.18 -10.26 16 4 C 0.11 1.92 1.39 30.59 0.04 1.96 16 5 H 0.06 1.13 7.41 -2.39 -0.02 1.12 16 6 C -0.14 -2.21 5.28 29.85 0.16 -2.05 16 7 C 0.51 12.27 7.71 87.66 0.68 12.94 16 8 O -0.58 -18.50 13.97 10.74 0.15 -18.35 16 9 N -0.69 -15.31 5.34 -442.77 -2.37 -17.68 16 10 C 0.09 2.44 6.14 44.94 0.28 2.71 16 11 H 0.11 3.61 7.40 -2.39 -0.02 3.59 16 12 C -0.17 -4.52 9.87 30.56 0.30 -4.22 16 13 C -0.12 -3.72 1.94 -52.17 -0.10 -3.83 16 14 C -0.08 -2.52 5.37 30.77 0.17 -2.36 16 15 C 0.14 5.78 6.52 86.43 0.56 6.34 16 16 N -0.61 -30.65 2.93 -698.92 -2.05 -32.70 16 17 C -0.26 -14.43 9.55 84.03 0.80 -13.62 16 18 H 0.06 3.46 7.86 -2.91 -0.02 3.44 16 19 C -0.05 -2.92 5.00 84.86 0.42 -2.49 16 20 N -0.94 -55.84 11.05 21.65 0.24 -55.60 16 21 Si 0.97 45.34 29.57 68.60 2.03 47.37 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C 0.18 8.91 5.36 86.43 0.46 9.37 16 26 C -0.09 -3.71 5.83 30.77 0.18 -3.53 16 27 C -0.11 -1.35 2.69 -10.80 -0.03 -1.37 16 28 C -0.15 -1.29 8.96 71.98 0.65 -0.65 16 29 C -0.15 -1.81 7.84 71.98 0.56 -1.25 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.02 6.39 -2.39 -0.02 1.00 16 34 H 0.04 0.93 7.23 -2.39 -0.02 0.91 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.14 1.22 6.37 -2.39 -0.02 1.20 16 37 H 0.41 6.84 7.12 -92.71 -0.66 6.18 16 38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 1.97 6.75 -2.39 -0.02 1.96 16 42 H 0.05 2.15 7.92 -2.39 -0.02 2.14 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.05 3.10 5.92 -2.39 -0.01 3.09 16 47 H 0.06 2.26 8.10 -2.39 -0.02 2.25 16 48 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 52 H 0.07 0.46 6.48 -2.39 -0.02 0.45 16 53 H 0.05 0.75 7.19 -2.38 -0.02 0.73 16 54 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.05 0.63 7.81 -2.39 -0.02 0.61 16 Total: -1.00 -70.70 420.66 3.30 -67.40 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.19 Total: 22.27 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 6.29 Total: -2.44 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.18 Total: -105.98 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.03 Total: -28.62 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.70 3.30 -67.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265328293.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.108 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds