Wall clock time and date at job start Tue Mar 31 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47247 * 2 1 4 4 C 1.42903 * 113.99997 * 179.82742 * 3 2 1 5 5 H 1.09000 * 109.47072 * 14.10119 * 4 3 2 6 6 C 1.52993 * 109.47201 * 134.10575 * 4 3 2 7 7 C 1.50705 * 109.47044 * 294.99715 * 6 4 3 8 8 O 1.21273 * 119.99987 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99519 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99378 * 180.02562 * 9 7 6 11 11 H 1.08993 * 115.56879 * 350.70128 * 10 9 7 12 12 C 1.53040 * 117.50413 * 136.41288 * 10 9 7 13 13 C 1.52819 * 117.49809 * 204.99731 * 10 9 7 14 14 C 1.53174 * 117.71667 * 0.13642 * 13 10 9 15 15 C 1.53353 * 108.76945 * 201.12217 * 14 13 10 16 16 N 1.46846 * 108.81207 * 308.68620 * 15 14 13 17 17 C 1.36935 * 120.38314 * 236.87333 * 16 15 14 18 18 H 1.08005 * 119.99672 * 30.43177 * 17 16 15 19 19 C 1.38811 * 120.00189 * 210.42153 * 17 16 15 20 20 N 1.31623 * 119.99679 * 14.16006 * 19 17 16 21 21 Si 1.86796 * 119.99936 * 194.14902 * 19 17 16 22 22 H 1.48496 * 109.46908 * 90.00815 * 21 19 17 23 23 H 1.48504 * 109.47194 * 210.00072 * 21 19 17 24 24 H 1.48496 * 109.47283 * 330.00560 * 21 19 17 25 25 C 1.46842 * 119.23418 * 56.89878 * 16 15 14 26 26 C 1.53189 * 117.71093 * 144.90205 * 13 10 9 27 27 C 1.53000 * 109.46895 * 254.10723 * 4 3 2 28 28 C 1.52998 * 109.47338 * 54.23861 * 27 4 3 29 29 C 1.52999 * 109.47167 * 174.24156 * 27 4 3 30 30 H 1.09001 * 109.47186 * 59.99295 * 1 2 3 31 31 H 1.08997 * 109.47751 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46742 * 300.00134 * 1 2 3 33 33 H 1.09004 * 109.47023 * 240.00337 * 2 1 3 34 34 H 1.08997 * 109.47560 * 120.00405 * 2 1 3 35 35 H 1.09005 * 109.46784 * 175.00005 * 6 4 3 36 36 H 1.08996 * 109.47369 * 55.00261 * 6 4 3 37 37 H 0.96992 * 120.00678 * 359.97438 * 9 7 6 38 38 H 1.09003 * 117.49693 * 0.02562 * 12 10 9 39 39 H 1.08990 * 117.52909 * 214.94064 * 12 10 9 40 40 H 1.09004 * 109.58957 * 81.33951 * 14 13 10 41 41 H 1.09005 * 109.58957 * 320.90884 * 14 13 10 42 42 H 1.09004 * 109.58202 * 188.88742 * 15 14 13 43 43 H 1.09001 * 109.57570 * 68.48616 * 15 14 13 44 44 H 0.97001 * 119.99701 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.58012 * 62.90405 * 25 16 15 46 46 H 1.09000 * 109.57900 * 183.29720 * 25 16 15 47 47 H 1.08988 * 109.59048 * 39.09289 * 26 13 10 48 48 H 1.08998 * 109.58587 * 278.66061 * 26 13 10 49 49 H 1.09002 * 109.47257 * 294.24239 * 27 4 3 50 50 H 1.09005 * 109.47262 * 54.16912 * 28 27 4 51 51 H 1.09003 * 109.47362 * 174.16188 * 28 27 4 52 52 H 1.08998 * 109.47400 * 294.16493 * 28 27 4 53 53 H 1.09000 * 109.46865 * 59.99890 * 29 27 4 54 54 H 1.09001 * 109.47081 * 179.97438 * 29 27 4 55 55 H 1.08997 * 109.47229 * 299.99704 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0039 5 1 3.8725 0.4949 -0.2442 6 6 3.8630 2.5001 -1.0316 7 6 3.5055 2.0129 -2.4122 8 8 2.9594 0.9394 -2.5539 9 7 3.7937 2.7698 -3.4895 10 6 3.4457 2.2964 -4.8315 11 1 3.1031 1.2635 -4.8918 12 6 2.8203 3.3058 -5.7969 13 6 4.2609 2.8391 -6.0046 14 6 5.3828 3.8342 -5.6927 15 6 5.7017 4.6324 -6.9627 16 7 5.9276 3.6926 -8.0683 17 6 7.1055 3.7146 -8.7662 18 1 8.0187 4.0165 -8.2749 19 6 7.1259 3.3487 -10.1051 20 7 5.9988 3.2512 -10.7779 21 14 8.7529 2.9949 -10.9519 22 1 9.0817 1.5538 -10.8097 23 1 8.6460 3.3383 -12.3927 24 1 9.8242 3.8111 -10.3265 25 6 4.8755 2.7295 -8.4171 26 6 4.5397 1.8928 -7.1766 27 6 3.9041 1.8955 1.3922 28 6 3.3507 0.9330 2.4449 29 6 5.4333 1.8777 1.4386 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.9406 2.6508 -0.9673 36 1 3.3519 3.4425 -0.8352 37 1 4.2308 3.6282 -3.3762 38 1 2.6683 4.3222 -5.4335 39 1 2.0665 2.9373 -6.4925 40 1 6.2717 3.2931 -5.3684 41 1 5.0591 4.5148 -4.9050 42 1 6.5988 5.2305 -6.8027 43 1 4.8630 5.2854 -7.2039 44 1 6.0131 2.9959 -11.7136 45 1 3.9856 3.2647 -8.7486 46 1 5.2287 2.0754 -9.2143 47 1 3.6566 1.2852 -7.3737 48 1 5.3831 1.2471 -6.9322 49 1 3.5461 2.9042 1.5984 50 1 3.6225 -0.0892 2.1812 51 1 3.7704 1.1804 3.4200 52 1 2.2650 1.0218 2.4835 53 1 5.8275 2.5635 0.6887 54 1 5.7704 2.1883 2.4275 55 1 5.7914 0.8690 1.2326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265328294.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:44 Heat of formation + Delta-G solvation = -76.593626 kcal Electronic energy + Delta-G solvation = -30508.436415 eV Core-core repulsion = 26545.297381 eV Total energy + Delta-G solvation = -3963.139034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23862 -40.15272 -39.02471 -37.08039 -36.02735 -34.45502 -33.39361 -32.42644 -31.67116 -30.92712 -29.84455 -27.85149 -26.25090 -25.43056 -24.05417 -23.65267 -23.13834 -22.32101 -21.33412 -20.95895 -19.80191 -18.49734 -17.96744 -17.93516 -17.31532 -16.75944 -16.66890 -15.98599 -15.74869 -15.65187 -15.29011 -15.20643 -14.98780 -14.78359 -14.58580 -14.36692 -14.16806 -13.93276 -13.76213 -13.45792 -13.27032 -13.11248 -13.04143 -12.92345 -12.87383 -12.86263 -12.60355 -12.54589 -12.45630 -12.25598 -12.08373 -11.98573 -11.92009 -11.79531 -11.62304 -11.48092 -11.37282 -11.25628 -10.91066 -10.64034 -10.48394 -10.25473 -9.61485 -8.59589 -7.84874 -5.34776 1.46450 1.47987 1.56481 1.65948 2.12598 2.51328 2.80403 2.96883 3.30207 3.62382 3.68326 3.76894 3.82211 3.89696 3.99577 4.05682 4.13493 4.14972 4.24521 4.30690 4.42681 4.48670 4.53495 4.53939 4.56953 4.63874 4.73643 4.74538 4.81740 4.84861 4.88443 4.91805 4.94135 4.98952 5.02995 5.03689 5.07814 5.09900 5.11511 5.17961 5.24222 5.28703 5.32061 5.38841 5.44372 5.46549 5.53938 5.59785 5.65870 5.78840 6.39478 6.42948 6.60039 7.17297 7.31707 7.89065 8.40457 9.19649 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002156 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.414639 B =12985.866473 C =13669.692221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 O -0.389 6.389 4 C 0.109 3.891 5 H 0.053 0.947 6 C -0.143 4.143 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.690 5.690 10 C 0.089 3.911 11 H 0.114 0.886 12 C -0.173 4.173 13 C -0.114 4.114 14 C -0.081 4.081 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.066 0.934 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.181 3.819 26 C -0.094 4.094 27 C -0.106 4.106 28 C -0.145 4.145 29 C -0.150 4.150 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.249 0.751 45 H -0.002 1.002 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.083 0.917 50 H 0.047 0.953 51 H 0.067 0.933 52 H 0.052 0.948 53 H 0.068 0.932 54 H 0.069 0.931 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -1.664 27.511 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.309 6.309 4 C 0.050 3.950 5 H 0.071 0.929 6 C -0.182 4.182 7 C 0.302 3.698 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.018 4.018 11 H 0.132 0.868 12 C -0.211 4.211 13 C -0.116 4.116 14 C -0.120 4.120 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.055 3.945 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.202 4.202 29 C -0.207 4.207 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.086 0.914 52 H 0.071 0.929 53 H 0.087 0.913 54 H 0.088 0.912 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.636 -2.281 27.277 28.165 hybrid contribution 0.891 -0.186 -1.350 1.628 sum -5.746 -2.467 25.927 26.670 Atomic orbital electron populations 1.21709 0.93466 1.02829 1.02256 1.22531 0.95773 0.83629 0.99632 1.87802 1.21093 1.27044 1.94960 1.21913 0.81521 0.97654 0.93883 0.92855 1.22107 1.05271 1.01763 0.89061 1.21200 0.77207 0.84074 0.87331 1.90648 1.43712 1.23978 1.87239 1.45357 1.61224 1.23195 1.04294 1.21544 1.03206 0.97506 0.79538 0.86821 1.23586 0.95594 1.00109 1.01818 1.21796 0.93367 1.00181 0.96223 1.21441 0.96303 0.96563 0.97709 1.21023 0.98149 0.91235 0.87723 1.44224 1.15751 1.36691 1.36542 1.19523 0.87101 1.41138 0.91301 0.91650 1.25868 0.99723 1.02349 0.96825 1.70158 1.26775 1.52762 1.08471 0.85275 0.80067 0.77946 0.77219 1.21398 1.22205 1.19151 1.20525 0.89226 0.90854 0.93862 1.21626 0.99854 0.96734 0.95126 1.21509 0.96665 1.00903 0.93404 1.21807 1.01033 0.98669 0.98714 1.21912 0.93460 1.02228 1.03079 0.93545 0.89919 0.91476 0.94696 0.92599 0.84983 0.86309 0.74910 0.87287 0.88619 0.92404 0.89553 0.92570 0.96560 0.94173 0.98425 0.92719 0.91917 0.93438 0.89851 0.93341 0.91403 0.92869 0.91299 0.91202 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.06 1.27 5.72 71.98 0.41 1.68 16 3 O -0.39 -8.65 8.70 -135.21 -1.18 -9.82 16 4 C 0.11 1.93 1.40 30.59 0.04 1.97 16 5 H 0.05 1.11 7.47 -2.39 -0.02 1.09 16 6 C -0.14 -2.21 5.29 29.85 0.16 -2.05 16 7 C 0.51 12.26 7.71 87.66 0.68 12.93 16 8 O -0.58 -18.49 13.80 10.76 0.15 -18.34 16 9 N -0.69 -15.29 5.34 -442.76 -2.37 -17.65 16 10 C 0.09 2.46 6.14 44.94 0.28 2.74 16 11 H 0.11 3.62 7.40 -2.39 -0.02 3.60 16 12 C -0.17 -4.73 9.87 30.56 0.30 -4.43 16 13 C -0.11 -3.60 1.94 -52.17 -0.10 -3.70 16 14 C -0.08 -2.47 5.37 30.77 0.17 -2.30 16 15 C 0.14 5.71 6.52 86.43 0.56 6.28 16 16 N -0.61 -30.39 2.93 -698.88 -2.05 -32.44 16 17 C -0.26 -14.27 9.55 84.03 0.80 -13.47 16 18 H 0.07 3.48 7.87 -2.91 -0.02 3.46 16 19 C -0.05 -2.94 4.97 84.86 0.42 -2.52 16 20 N -0.94 -55.73 11.10 21.65 0.24 -55.49 16 21 Si 0.97 45.03 29.58 68.60 2.03 47.06 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 C 0.18 8.84 5.37 86.43 0.46 9.31 16 26 C -0.09 -3.64 5.83 30.78 0.18 -3.46 16 27 C -0.11 -1.34 2.69 -10.79 -0.03 -1.36 16 28 C -0.14 -1.81 7.87 71.98 0.57 -1.25 16 29 C -0.15 -1.46 8.97 71.98 0.65 -0.81 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 0.89 7.14 -2.38 -0.02 0.88 16 34 H 0.06 0.97 6.52 -2.39 -0.02 0.95 16 35 H 0.13 1.34 6.37 -2.38 -0.02 1.32 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.41 6.83 7.12 -92.71 -0.66 6.17 16 38 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 41 H 0.09 1.93 6.75 -2.38 -0.02 1.91 16 42 H 0.06 2.16 7.92 -2.38 -0.02 2.15 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.05 3.06 5.92 -2.39 -0.01 3.04 16 47 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 50 H 0.05 0.63 7.74 -2.38 -0.02 0.61 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.05 0.76 7.32 -2.39 -0.02 0.74 16 53 H 0.07 0.54 6.49 -2.39 -0.02 0.53 16 54 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 55 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -70.01 420.67 3.30 -66.71 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.19 Total: 22.30 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.28 Total: -2.32 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -4.18 Total: -105.59 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.03 Total: -28.16 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.01 3.30 -66.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265328294.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.885 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds