Wall clock time and date at job start Tue Mar 31 2020 22:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.46900 * 2 1 4 4 C 1.42906 * 113.99333 * 184.50397 * 3 2 1 5 5 H 1.08995 * 109.47789 * 327.75471 * 4 3 2 6 6 C 1.52998 * 109.46839 * 207.74955 * 4 3 2 7 7 C 1.50703 * 109.47025 * 65.00429 * 6 4 3 8 8 O 1.21282 * 119.99820 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99909 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99897 * 179.97438 * 9 7 6 11 11 H 1.09004 * 115.56285 * 9.29938 * 10 9 7 12 12 C 1.53032 * 117.50652 * 223.58875 * 10 9 7 13 13 C 1.52818 * 117.50286 * 155.00070 * 10 9 7 14 14 C 1.53181 * 117.71262 * 359.86293 * 13 10 9 15 15 C 1.53348 * 108.76715 * 158.87726 * 14 13 10 16 16 N 1.46840 * 108.81706 * 51.30557 * 15 14 13 17 17 C 1.36938 * 120.37739 * 123.10688 * 16 15 14 18 18 H 1.08001 * 120.00031 * 324.32183 * 17 16 15 19 19 C 1.38814 * 119.99451 * 144.59986 * 17 16 15 20 20 N 1.31611 * 120.00432 * 344.09409 * 19 17 16 21 21 Si 1.86805 * 119.99676 * 164.09304 * 19 17 16 22 22 H 1.48499 * 109.46875 * 90.00107 * 21 19 17 23 23 H 1.48497 * 109.47288 * 209.99858 * 21 19 17 24 24 H 1.48502 * 109.47000 * 330.00093 * 21 19 17 25 25 C 1.46845 * 119.23907 * 303.38485 * 16 15 14 26 26 C 1.52866 * 109.07794 * 56.58005 * 25 16 15 27 27 C 1.53006 * 109.46913 * 87.75486 * 4 3 2 28 28 C 1.53000 * 109.47163 * 64.20635 * 27 4 3 29 29 C 1.53005 * 109.47023 * 184.20452 * 27 4 3 30 30 H 1.09003 * 109.47173 * 300.00204 * 1 2 3 31 31 H 1.09004 * 109.47121 * 59.99389 * 1 2 3 32 32 H 1.09001 * 109.47545 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46748 * 240.00342 * 2 1 3 34 34 H 1.08995 * 109.47502 * 120.00142 * 2 1 3 35 35 H 1.08998 * 109.47434 * 305.00191 * 6 4 3 36 36 H 1.08999 * 109.47148 * 185.00416 * 6 4 3 37 37 H 0.97001 * 119.99993 * 0.02562 * 9 7 6 38 38 H 1.09000 * 117.50816 * 145.04516 * 12 10 9 39 39 H 1.09005 * 117.52341 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.58620 * 39.09242 * 14 13 10 41 41 H 1.08997 * 109.71298 * 278.73329 * 14 13 10 42 42 H 1.09000 * 109.57881 * 291.50978 * 15 14 13 43 43 H 1.08998 * 109.69170 * 171.17493 * 15 14 13 44 44 H 0.96996 * 120.00168 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.57708 * 176.41696 * 25 16 15 46 46 H 1.08999 * 109.57906 * 296.81357 * 25 16 15 47 47 H 1.09001 * 109.66951 * 189.04979 * 26 25 16 48 48 H 1.08997 * 109.56689 * 68.71994 * 26 25 16 49 49 H 1.08993 * 109.47151 * 304.20655 * 27 4 3 50 50 H 1.09002 * 109.47281 * 65.88458 * 28 27 4 51 51 H 1.09002 * 109.47341 * 185.88169 * 28 27 4 52 52 H 1.09000 * 109.47399 * 305.88522 * 28 27 4 53 53 H 1.09000 * 109.46309 * 60.00116 * 29 27 4 54 54 H 1.08998 * 109.46832 * 179.97438 * 29 27 4 55 55 H 1.09001 * 109.47092 * 299.99968 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4270 1.4614 -0.1025 5 1 3.8965 0.6100 0.3902 6 6 3.8846 2.7566 0.5712 7 6 3.5961 2.6834 2.0486 8 8 3.0754 1.6929 2.5164 9 7 3.9168 3.7185 2.8499 10 6 3.6358 3.6476 4.2860 11 1 3.3150 2.6733 4.6549 12 6 3.0346 4.8880 4.9506 13 6 4.4911 4.5075 5.2157 14 6 5.5801 5.3773 4.5802 15 6 5.9391 6.5073 5.5528 16 7 6.2294 5.9248 6.8691 17 6 7.4360 6.1514 7.4757 18 1 8.3350 6.2198 6.8811 19 6 7.5044 6.2876 8.8555 20 7 6.4091 6.5127 9.5497 21 14 9.1510 6.1511 9.7270 22 1 9.7786 7.4943 9.8124 23 1 8.9437 5.6138 11.0957 24 1 10.0397 5.2369 8.9657 25 6 5.2134 5.0916 7.5247 26 6 4.8374 3.9380 6.5948 27 6 3.8317 1.4835 -1.5779 28 6 3.2588 2.7355 -2.2452 29 6 5.3577 1.4999 -1.6880 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.3483 3.6008 0.1377 36 1 4.9554 2.8882 0.4162 37 1 4.3329 4.5108 2.4757 38 1 2.3182 4.7298 5.7569 39 1 2.8483 5.7572 4.3198 40 1 5.2103 5.8021 3.6470 41 1 6.4644 4.7720 4.3810 42 1 5.0999 7.1979 5.6361 43 1 6.8166 7.0410 5.1879 44 1 6.4568 6.6075 10.5138 45 1 5.6144 4.6919 8.4562 46 1 4.3280 5.6920 7.7337 47 1 3.9748 3.4077 6.9984 48 1 5.6795 3.2516 6.5057 49 1 3.4411 0.5958 -2.0752 50 1 3.7281 3.6218 -1.8183 51 1 3.4574 2.6995 -3.3164 52 1 2.1828 2.7771 -2.0764 53 1 5.7658 0.6080 -1.2126 54 1 5.6460 1.5152 -2.7391 55 1 5.7484 2.3878 -1.1907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265328295.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:49 Heat of formation + Delta-G solvation = -77.574198 kcal Electronic energy + Delta-G solvation = -30498.913049 eV Core-core repulsion = 26535.731494 eV Total energy + Delta-G solvation = -3963.181555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.24620 -40.16763 -39.04379 -37.05961 -36.23381 -34.45222 -33.36720 -32.22295 -31.73376 -30.73058 -29.78172 -27.98466 -26.22899 -25.60919 -24.05919 -23.73324 -23.25270 -22.48887 -21.46610 -20.29126 -19.80113 -18.61928 -18.08315 -17.79343 -17.28646 -16.77607 -16.47538 -16.08929 -15.92086 -15.70503 -15.34817 -15.03877 -14.88630 -14.79086 -14.70275 -14.33133 -14.12003 -14.02926 -13.75957 -13.72598 -13.29458 -13.10435 -13.06831 -12.98057 -12.87616 -12.64648 -12.59891 -12.55495 -12.39730 -12.30108 -12.08151 -12.00258 -11.85000 -11.81914 -11.71240 -11.38162 -11.34448 -11.26234 -10.91448 -10.64405 -10.50242 -10.28150 -9.60559 -8.53585 -7.86554 -5.40359 1.45371 1.47322 1.56764 1.66410 2.13038 2.50643 2.79314 2.97267 3.28433 3.62466 3.67686 3.77290 3.82391 3.89578 3.99869 4.02936 4.13765 4.16269 4.20678 4.31722 4.36538 4.45508 4.51925 4.53474 4.55810 4.63983 4.70756 4.74054 4.84296 4.86393 4.91175 4.91998 4.93120 4.98862 5.04817 5.06840 5.08603 5.09699 5.13043 5.17625 5.25498 5.27128 5.31366 5.38477 5.47943 5.49776 5.50457 5.59255 5.67124 5.73097 6.37907 6.44345 6.60686 7.17600 7.32337 7.87527 8.42856 9.17847 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.002163 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.307433 B =12944.527868 C =13580.148557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.389 6.389 4 C 0.109 3.891 5 H 0.050 0.950 6 C -0.135 4.135 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.690 5.690 10 C 0.089 3.911 11 H 0.114 0.886 12 C -0.173 4.173 13 C -0.114 4.114 14 C -0.081 4.081 15 C 0.145 3.855 16 N -0.607 5.607 17 C -0.268 4.268 18 H 0.061 0.939 19 C -0.044 4.044 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.270 1.270 25 C 0.187 3.813 26 C -0.094 4.094 27 C -0.112 4.112 28 C -0.143 4.143 29 C -0.150 4.150 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.414 0.586 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.040 0.960 46 H -0.001 1.001 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.061 0.939 52 H 0.049 0.951 53 H 0.052 0.948 54 H 0.068 0.932 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -9.387 -25.957 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.309 6.309 4 C 0.051 3.949 5 H 0.068 0.932 6 C -0.174 4.174 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.018 4.018 11 H 0.132 0.868 12 C -0.211 4.211 13 C -0.116 4.116 14 C -0.120 4.120 15 C 0.019 3.981 16 N -0.330 5.330 17 C -0.398 4.398 18 H 0.079 0.921 19 C -0.240 4.240 20 N -0.576 5.576 21 Si 0.791 3.209 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.061 3.939 26 C -0.133 4.133 27 C -0.131 4.131 28 C -0.200 4.200 29 C -0.207 4.207 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.251 0.749 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.017 0.983 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.068 0.932 53 H 0.071 0.929 54 H 0.087 0.913 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.837 -9.901 -25.474 28.432 hybrid contribution 0.931 0.131 1.232 1.549 sum -6.906 -9.770 -24.242 27.034 Atomic orbital electron populations 1.21715 0.93230 1.02995 1.02326 1.22466 0.96008 0.83656 0.99567 1.87860 1.21457 1.26974 1.94618 1.21851 0.81640 0.96529 0.94880 0.93219 1.21999 1.05409 1.00839 0.89200 1.21208 0.76782 0.81977 0.89883 1.90669 1.44256 1.33227 1.77497 1.45355 1.62445 1.20040 1.06260 1.21542 1.03525 0.96206 0.80522 0.86830 1.23592 0.95606 0.98973 1.02941 1.21787 0.92943 1.01141 0.95688 1.21432 0.96555 0.96440 0.97559 1.21013 0.97772 0.93636 0.85631 1.44126 1.14765 1.55624 1.18495 1.19398 0.86210 1.43909 0.90329 0.92145 1.25969 0.99852 0.99596 0.98611 1.70169 1.28833 1.52455 1.06127 0.85354 0.80101 0.77937 0.77496 1.20822 1.21966 1.19521 1.20300 0.89984 0.89765 0.93837 1.21540 0.99886 0.97847 0.94038 1.21570 0.97125 1.00037 0.94368 1.21798 1.00884 0.96943 1.00406 1.21909 0.93494 1.02467 1.02855 0.93502 0.91553 0.89599 0.92411 0.94953 0.86144 0.84821 0.74884 0.88575 0.87275 0.89577 0.92359 0.96737 0.92670 0.94088 0.94112 0.98257 0.91769 0.93253 0.91124 0.91486 0.92031 0.93154 0.92880 0.91293 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.06 1.16 6.44 71.98 0.46 1.63 16 3 O -0.39 -8.68 8.63 -135.18 -1.17 -9.85 16 4 C 0.11 1.96 1.42 30.60 0.04 2.00 16 5 H 0.05 1.05 7.67 -2.39 -0.02 1.03 16 6 C -0.14 -2.13 4.64 29.85 0.14 -1.99 16 7 C 0.51 12.47 7.71 87.66 0.68 13.15 16 8 O -0.58 -19.15 14.99 10.76 0.16 -18.99 16 9 N -0.69 -15.43 5.34 -442.76 -2.37 -17.79 16 10 C 0.09 2.47 6.14 44.94 0.28 2.75 16 11 H 0.11 3.63 7.40 -2.38 -0.02 3.62 16 12 C -0.17 -4.75 9.86 30.56 0.30 -4.44 16 13 C -0.11 -3.60 1.94 -52.17 -0.10 -3.70 16 14 C -0.08 -2.47 5.37 30.77 0.17 -2.30 16 15 C 0.14 5.80 6.52 86.43 0.56 6.36 16 16 N -0.61 -30.36 2.90 -699.84 -2.03 -32.39 16 17 C -0.27 -14.76 9.47 84.03 0.80 -13.96 16 18 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 19 C -0.04 -2.47 4.88 84.86 0.41 -2.05 16 20 N -0.93 -55.63 11.63 21.65 0.25 -55.38 16 21 Si 0.96 44.91 29.58 68.60 2.03 46.94 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C 0.19 9.07 5.33 86.27 0.46 9.53 16 26 C -0.09 -3.60 5.82 30.61 0.18 -3.42 16 27 C -0.11 -1.40 2.87 -10.79 -0.03 -1.44 16 28 C -0.14 -1.60 8.49 71.98 0.61 -0.99 16 29 C -0.15 -1.46 8.94 71.98 0.64 -0.82 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.90 7.55 -2.39 -0.02 0.88 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 1.52 6.79 -2.39 -0.02 1.51 16 36 H 0.13 1.37 6.31 -2.39 -0.02 1.36 16 37 H 0.41 6.85 7.12 -92.71 -0.66 6.19 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.11 2.62 8.14 -2.38 -0.02 2.61 16 40 H 0.09 1.93 6.75 -2.39 -0.02 1.92 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.05 2.16 7.92 -2.39 -0.02 2.14 16 44 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 45 H 0.04 2.24 6.42 -2.38 -0.02 2.23 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 47 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 48 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.07 0.92 7.56 -2.39 -0.02 0.90 16 50 H 0.07 0.61 6.83 -2.39 -0.02 0.59 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.05 0.71 7.65 -2.39 -0.02 0.69 16 53 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 54 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 55 H 0.07 0.55 6.44 -2.39 -0.02 0.54 16 Total: -1.00 -71.19 423.05 3.41 -67.78 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.19 Total: 21.04 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.34 Total: -1.37 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.15 Total: -105.56 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.01 Total: -28.83 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.19 3.41 -67.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265328295.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.793 kcal (2) G-P(sol) polarization free energy of solvation -71.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds