Wall clock time and date at job start Tue Mar 31 2020 22:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47130 * 2 1 4 4 C 1.42895 * 114.00098 * 184.26910 * 3 2 1 5 5 H 1.08998 * 109.47588 * 35.76652 * 4 3 2 6 6 C 1.53000 * 109.47437 * 155.76998 * 4 3 2 7 7 C 1.50706 * 109.46605 * 295.00368 * 6 4 3 8 8 O 1.21275 * 120.00234 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99945 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00382 * 179.97438 * 9 7 6 11 11 H 1.09003 * 115.56021 * 9.28726 * 10 9 7 12 12 C 1.53038 * 117.50484 * 223.58255 * 10 9 7 13 13 C 1.52813 * 117.50402 * 154.99522 * 10 9 7 14 14 C 1.53185 * 117.71920 * 359.86175 * 13 10 9 15 15 C 1.53351 * 108.76909 * 158.87664 * 14 13 10 16 16 N 1.46836 * 108.81662 * 51.30996 * 15 14 13 17 17 C 1.36932 * 120.38068 * 123.10673 * 16 15 14 18 18 H 1.08001 * 119.99715 * 328.88957 * 17 16 15 19 19 C 1.38807 * 119.99988 * 149.17031 * 17 16 15 20 20 N 1.31619 * 119.99993 * 344.27332 * 19 17 16 21 21 Si 1.86806 * 120.00101 * 164.27812 * 19 17 16 22 22 H 1.48489 * 109.47364 * 59.99434 * 21 19 17 23 23 H 1.48501 * 109.47260 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46628 * 299.99247 * 21 19 17 25 25 C 1.46841 * 119.23901 * 303.38022 * 16 15 14 26 26 C 1.52869 * 109.08153 * 56.58095 * 25 16 15 27 27 C 1.53005 * 109.47331 * 275.76451 * 4 3 2 28 28 C 1.52994 * 109.47287 * 173.44499 * 27 4 3 29 29 C 1.52996 * 109.47321 * 293.45051 * 27 4 3 30 30 H 1.09006 * 109.46917 * 299.99169 * 1 2 3 31 31 H 1.09002 * 109.47396 * 59.99410 * 1 2 3 32 32 H 1.08999 * 109.46923 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46707 * 240.00386 * 2 1 3 34 34 H 1.09002 * 109.47396 * 120.00590 * 2 1 3 35 35 H 1.08995 * 109.47674 * 174.99908 * 6 4 3 36 36 H 1.08997 * 109.47402 * 54.99673 * 6 4 3 37 37 H 0.97007 * 119.99559 * 359.97438 * 9 7 6 38 38 H 1.08997 * 117.50277 * 145.04537 * 12 10 9 39 39 H 1.08995 * 117.52828 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.58327 * 39.08862 * 14 13 10 41 41 H 1.08997 * 109.70705 * 278.73686 * 14 13 10 42 42 H 1.08996 * 109.57636 * 291.50921 * 15 14 13 43 43 H 1.09000 * 109.68606 * 171.17857 * 15 14 13 44 44 H 0.97002 * 119.99688 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.58278 * 176.41932 * 25 16 15 46 46 H 1.08997 * 109.58101 * 296.82252 * 25 16 15 47 47 H 1.08993 * 109.67134 * 189.04946 * 26 25 16 48 48 H 1.09000 * 109.56618 * 68.72068 * 26 25 16 49 49 H 1.09003 * 109.46740 * 53.44867 * 27 4 3 50 50 H 1.09006 * 109.47606 * 306.97603 * 28 27 4 51 51 H 1.09002 * 109.47186 * 66.97070 * 28 27 4 52 52 H 1.09004 * 109.47646 * 186.97201 * 28 27 4 53 53 H 1.08997 * 109.47117 * 59.99633 * 29 27 4 54 54 H 1.09003 * 109.47013 * 179.97438 * 29 27 4 55 55 H 1.08994 * 109.47278 * 299.99664 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4613 -0.0972 5 1 3.8116 0.6743 -0.7461 6 6 3.7906 2.8275 -0.6824 7 6 3.2855 2.9173 -2.0994 8 8 2.6938 1.9806 -2.5928 9 7 3.4923 4.0380 -2.8188 10 6 3.0018 4.1252 -4.1965 11 1 2.3473 3.3137 -4.5149 12 6 3.9403 4.7286 -5.2440 13 6 2.7243 5.5182 -4.7600 14 6 2.9754 6.7203 -3.8443 15 6 3.1549 7.9722 -4.7115 16 7 2.0268 8.0662 -5.6467 17 6 1.2377 9.1851 -5.6698 18 1 1.0782 9.7521 -4.7645 19 6 0.6381 9.5872 -6.8553 20 7 1.0575 9.0991 -8.0035 21 14 -0.7640 10.8211 -6.8213 22 1 -0.2926 12.0893 -6.2096 23 1 -1.2268 11.0830 -8.2079 24 1 -1.8870 10.2722 -6.0196 25 6 1.7509 6.9441 -6.5528 26 6 1.5466 5.6738 -5.7273 27 6 4.0467 1.3220 1.2950 28 6 5.5712 1.2802 1.1732 29 6 3.6365 2.5172 2.1576 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.8736 2.9501 -0.6742 36 1 3.3315 3.6134 -0.0827 37 1 3.9659 4.7871 -2.4243 38 1 3.9030 4.3143 -6.2514 39 1 4.9224 5.0613 -4.9084 40 1 3.8777 6.5500 -3.2570 41 1 2.1251 6.8573 -3.1762 42 1 4.0877 7.8986 -5.2705 43 1 3.1782 8.8582 -4.0770 44 1 0.6387 9.3804 -8.8320 45 1 0.8489 7.1525 -7.1283 46 1 2.5941 6.8050 -7.2293 47 1 1.5010 4.8093 -6.3895 48 1 0.6176 5.7509 -5.1625 49 1 3.6939 0.4010 1.7590 50 1 5.8578 0.5064 0.4610 51 1 5.9345 2.2471 0.8249 52 1 6.0076 1.0574 2.1469 53 1 2.5504 2.5470 2.2443 54 1 4.0773 2.4177 3.1495 55 1 3.9892 3.4383 1.6936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265328296.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:53 Heat of formation + Delta-G solvation = -75.750295 kcal Electronic energy + Delta-G solvation = -30573.350686 eV Core-core repulsion = 26610.248221 eV Total energy + Delta-G solvation = -3963.102465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.24479 -40.17087 -39.05636 -37.07994 -36.22881 -34.44973 -33.36670 -32.23554 -31.71124 -30.72953 -29.78966 -27.99780 -26.23989 -25.59199 -24.05651 -23.75979 -23.23522 -22.47206 -21.46099 -20.30516 -19.79947 -18.63135 -18.09223 -17.82106 -17.27191 -16.78667 -16.44718 -16.13432 -15.84777 -15.70813 -15.32821 -15.06772 -14.95500 -14.73245 -14.70909 -14.31273 -14.15312 -14.00631 -13.75346 -13.72221 -13.27103 -13.09419 -13.05158 -12.99523 -12.86445 -12.69259 -12.57170 -12.56555 -12.40784 -12.28686 -12.09566 -12.00355 -11.83932 -11.79300 -11.71120 -11.39810 -11.34451 -11.25982 -10.91838 -10.64686 -10.47773 -10.28414 -9.60690 -8.58585 -7.85745 -5.34882 1.46141 1.48830 1.55229 1.66518 2.13538 2.51404 2.79873 2.97348 3.29517 3.62584 3.67479 3.77266 3.82211 3.89897 3.99758 4.03316 4.14252 4.16570 4.20881 4.30059 4.36206 4.45366 4.50177 4.53200 4.56293 4.63445 4.70766 4.74150 4.84780 4.86088 4.91174 4.92267 4.92561 4.98740 5.03670 5.05631 5.09256 5.09787 5.11681 5.17982 5.24792 5.26629 5.31999 5.38837 5.47637 5.49539 5.53124 5.59742 5.66044 5.76894 6.39238 6.42742 6.61005 7.17286 7.32756 7.89157 8.41084 9.19177 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.002238 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.040066 B =12509.157453 C =12792.253842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 O -0.393 6.393 4 C 0.109 3.891 5 H 0.053 0.947 6 C -0.134 4.134 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.690 5.690 10 C 0.087 3.913 11 H 0.112 0.888 12 C -0.168 4.168 13 C -0.117 4.117 14 C -0.081 4.081 15 C 0.145 3.855 16 N -0.608 5.608 17 C -0.265 4.265 18 H 0.064 0.936 19 C -0.049 4.049 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.183 3.817 26 C -0.094 4.094 27 C -0.114 4.114 28 C -0.148 4.148 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.413 0.587 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.050 0.950 46 H 0.000 1.000 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.054 0.946 51 H 0.070 0.930 52 H 0.067 0.933 53 H 0.046 0.954 54 H 0.062 0.938 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.786 -17.506 20.634 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.313 6.313 4 C 0.051 3.949 5 H 0.071 0.929 6 C -0.174 4.174 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.019 4.019 11 H 0.130 0.870 12 C -0.206 4.206 13 C -0.119 4.119 14 C -0.120 4.120 15 C 0.020 3.980 16 N -0.331 5.331 17 C -0.395 4.395 18 H 0.081 0.919 19 C -0.245 4.245 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.058 3.942 26 C -0.134 4.134 27 C -0.133 4.133 28 C -0.205 4.205 29 C -0.202 4.202 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.018 0.982 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.088 0.912 52 H 0.086 0.914 53 H 0.065 0.935 54 H 0.081 0.919 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.204 -17.964 20.166 28.532 hybrid contribution -0.717 0.848 -0.700 1.313 sum 8.487 -17.116 19.465 27.274 Atomic orbital electron populations 1.21727 0.93701 1.02960 1.02091 1.22466 0.95739 0.83608 0.99766 1.87880 1.21712 1.27116 1.94560 1.21908 0.81283 0.96145 0.95561 0.92924 1.21992 1.04694 0.99892 0.90775 1.21214 0.78397 0.81528 0.88752 1.90669 1.42869 1.39012 1.73067 1.45353 1.58286 1.17947 1.12512 1.21538 1.01309 0.96732 0.82356 0.86986 1.23593 0.95411 1.02561 0.99080 1.21795 0.97665 0.92165 1.00249 1.21434 1.01164 0.93195 0.96251 1.21007 0.89255 0.96263 0.91486 1.44175 1.31485 1.14940 1.42535 1.19451 1.23012 1.03923 0.93110 0.91873 1.25850 1.02914 1.00733 0.94958 1.70162 1.42692 1.47971 0.97092 0.85386 0.79766 0.79360 0.76209 1.19872 1.22031 1.20656 1.20375 0.98153 0.85128 0.90593 1.21545 0.96194 0.98464 0.97158 1.21594 0.96831 1.00025 0.94821 1.21882 0.93298 1.02734 1.02613 1.21825 1.01145 0.97631 0.99590 0.91828 0.93892 0.89414 0.94520 0.92188 0.84406 0.86526 0.74888 0.88482 0.86992 0.89437 0.92739 0.96408 0.92667 0.94124 0.93187 0.98233 0.91807 0.93691 0.91116 0.92678 0.91154 0.91418 0.93521 0.91883 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.06 1.21 6.47 71.98 0.47 1.67 16 3 O -0.39 -9.17 8.84 -135.20 -1.20 -10.36 16 4 C 0.11 1.95 1.40 30.60 0.04 2.00 16 5 H 0.05 1.07 7.60 -2.39 -0.02 1.05 16 6 C -0.13 -2.11 4.58 29.85 0.14 -1.98 16 7 C 0.51 12.52 7.71 87.66 0.68 13.19 16 8 O -0.58 -19.25 14.99 10.76 0.16 -19.09 16 9 N -0.69 -15.48 5.34 -442.78 -2.37 -17.85 16 10 C 0.09 2.45 6.14 44.94 0.28 2.72 16 11 H 0.11 3.64 7.40 -2.39 -0.02 3.62 16 12 C -0.17 -4.52 9.87 30.56 0.30 -4.22 16 13 C -0.12 -3.75 1.94 -52.17 -0.10 -3.85 16 14 C -0.08 -2.53 5.37 30.77 0.17 -2.36 16 15 C 0.15 5.81 6.52 86.43 0.56 6.37 16 16 N -0.61 -30.62 2.93 -699.87 -2.05 -32.67 16 17 C -0.26 -14.67 9.53 84.03 0.80 -13.87 16 18 H 0.06 3.41 7.88 -2.91 -0.02 3.38 16 19 C -0.05 -2.76 4.92 84.86 0.42 -2.35 16 20 N -0.93 -55.86 11.26 21.65 0.24 -55.61 16 21 Si 0.96 45.33 29.58 68.60 2.03 47.36 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 C 0.18 8.99 5.34 86.27 0.46 9.45 16 26 C -0.09 -3.70 5.82 30.61 0.18 -3.52 16 27 C -0.11 -1.41 2.84 -10.80 -0.03 -1.44 16 28 C -0.15 -1.29 8.82 71.98 0.63 -0.66 16 29 C -0.14 -1.70 8.57 71.98 0.62 -1.08 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 0.80 7.99 -2.39 -0.02 0.78 16 34 H 0.06 0.93 7.44 -2.39 -0.02 0.92 16 35 H 0.14 1.25 6.56 -2.39 -0.02 1.23 16 36 H 0.12 1.61 6.64 -2.39 -0.02 1.60 16 37 H 0.41 6.85 7.12 -92.70 -0.66 6.19 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.09 1.97 6.75 -2.39 -0.02 1.96 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 2.16 7.92 -2.39 -0.02 2.14 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 48 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.07 0.91 7.40 -2.39 -0.02 0.89 16 50 H 0.05 0.51 8.12 -2.38 -0.02 0.49 16 51 H 0.07 0.47 6.84 -2.39 -0.02 0.45 16 52 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 53 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 54 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 55 H 0.07 0.66 6.44 -2.39 -0.02 0.64 16 Total: -1.00 -71.87 422.35 3.36 -68.52 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.19 Total: 21.61 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.34 Total: -1.89 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -4.18 Total: -106.14 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.03 Total: -29.46 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.87 3.36 -68.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265328296.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.234 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds