Wall clock time and date at job start Tue Mar 31 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99820 * 2 1 4 4 H 1.08994 * 109.47464 * 334.85431 * 3 2 1 5 5 C 1.50699 * 109.46809 * 94.85337 * 3 2 1 6 6 O 1.21283 * 120.00198 * 5.00019 * 5 3 2 7 7 N 1.34782 * 119.99850 * 185.00242 * 5 3 2 8 8 C 1.46918 * 120.63053 * 359.71456 * 7 5 3 9 9 C 1.53622 * 108.54217 * 126.37020 * 8 7 5 10 10 C 1.53045 * 109.24030 * 54.85597 * 9 8 7 11 11 C 1.53032 * 109.53942 * 298.51327 * 10 9 8 12 12 H 1.08999 * 109.49443 * 301.41058 * 11 10 9 13 13 C 1.53005 * 109.52293 * 181.33088 * 11 10 9 14 14 N 1.46498 * 109.46858 * 65.14805 * 13 11 10 15 15 C 1.46504 * 119.99789 * 269.99603 * 14 13 11 16 16 C 1.36940 * 120.00432 * 89.99854 * 14 13 11 17 17 H 1.07992 * 119.99574 * 355.89093 * 16 14 13 18 18 C 1.38819 * 119.99925 * 175.88774 * 16 14 13 19 19 N 1.31611 * 119.99938 * 34.56595 * 18 16 14 20 20 Si 1.86795 * 119.99532 * 214.56209 * 18 16 14 21 21 H 1.48502 * 109.46981 * 95.00558 * 20 18 16 22 22 H 1.48506 * 109.46968 * 214.99877 * 20 18 16 23 23 H 1.48498 * 109.47427 * 334.99861 * 20 18 16 24 24 C 1.46925 * 120.62953 * 179.97438 * 7 5 3 25 25 C 1.52995 * 109.47281 * 214.85090 * 3 2 1 26 26 C 1.54897 * 110.75749 * 306.96418 * 25 3 2 27 27 C 1.54261 * 104.19546 * 156.25492 * 26 25 3 28 28 C 1.53878 * 106.60071 * 336.38929 * 27 26 25 29 29 C 1.54259 * 106.59557 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46959 * 304.99005 * 1 2 3 31 31 H 1.08994 * 109.47113 * 64.98977 * 1 2 3 32 32 H 1.09000 * 109.46719 * 184.99473 * 1 2 3 33 33 H 1.09000 * 109.59014 * 246.20583 * 8 7 5 34 34 H 1.09002 * 109.58869 * 6.63174 * 8 7 5 35 35 H 1.08999 * 109.63693 * 294.86510 * 9 8 7 36 36 H 1.08999 * 109.43515 * 174.72605 * 9 8 7 37 37 H 1.08999 * 109.45863 * 178.48502 * 10 9 8 38 38 H 1.09000 * 109.45539 * 58.53588 * 10 9 8 39 39 H 1.09006 * 109.46771 * 185.14270 * 13 11 10 40 40 H 1.08997 * 109.47254 * 305.14368 * 13 11 10 41 41 H 1.08995 * 109.47180 * 95.80832 * 15 14 13 42 42 H 1.08998 * 109.47303 * 215.80865 * 15 14 13 43 43 H 1.09000 * 109.47157 * 335.80644 * 15 14 13 44 44 H 0.97003 * 120.00082 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.58851 * 353.37085 * 24 7 5 46 46 H 1.09007 * 109.58855 * 113.65124 * 24 7 5 47 47 H 1.08997 * 110.67306 * 183.52452 * 25 3 2 48 48 H 1.08996 * 110.48524 * 37.57783 * 26 25 3 49 49 H 1.09003 * 110.48338 * 274.93646 * 26 25 3 50 50 H 1.08998 * 110.03392 * 217.10479 * 27 26 25 51 51 H 1.09004 * 110.03563 * 95.67476 * 27 26 25 52 52 H 1.09002 * 110.03110 * 119.28581 * 28 27 26 53 53 H 1.09000 * 110.03305 * 240.71054 * 28 27 26 54 54 H 1.09007 * 110.48232 * 142.28930 * 29 28 27 55 55 H 1.08997 * 110.48936 * 264.92502 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3082 2.0158 -0.4366 5 6 2.3243 1.7155 1.4157 6 8 2.1598 0.9301 2.3252 7 7 2.7880 2.9549 1.6713 8 6 2.9984 3.9153 0.5795 9 6 2.2401 5.2089 0.9139 10 6 2.6851 5.7132 2.2887 11 6 2.3447 4.6670 3.3524 12 1 1.2718 4.4752 3.3437 13 6 2.7595 5.1857 4.7308 14 7 1.9525 6.3591 5.0742 15 6 2.4131 7.6992 4.7024 16 6 0.7675 6.2034 5.7427 17 1 0.3954 5.2128 5.9583 18 6 0.0448 7.3189 6.1433 19 7 0.0405 8.4030 5.3971 20 14 -0.9215 7.2810 7.7414 21 1 -0.0980 7.8626 8.8317 22 1 -2.1674 8.0740 7.5854 23 1 -1.2676 5.8766 8.0776 24 6 3.0982 3.3694 3.0463 25 6 3.2990 1.2900 -0.8243 26 6 4.2494 0.1684 -0.3362 27 6 5.1431 -0.1284 -1.5580 28 6 4.3544 0.3231 -2.7997 29 6 3.0092 0.8792 -2.2890 30 1 -0.3633 0.5893 0.8419 31 1 -0.3633 0.4345 -0.9313 32 1 -0.3633 -1.0238 0.0895 33 1 4.0628 4.1278 0.4797 34 1 2.6180 3.4978 -0.3528 35 1 1.1682 5.0119 0.9281 36 1 2.4617 5.9643 0.1601 37 1 2.1690 6.6455 2.5179 38 1 3.7612 5.8865 2.2810 39 1 2.6013 4.4054 5.4753 40 1 3.8137 5.4623 4.7128 41 1 1.9493 7.9948 3.7614 42 1 2.1359 8.4081 5.4825 43 1 3.4969 7.6918 4.5867 44 1 -0.4648 9.1823 5.6768 45 1 2.7838 2.5916 3.7422 46 1 4.1710 3.5357 3.1447 47 1 3.7918 2.2615 -0.7862 48 1 3.6807 -0.7179 -0.0552 49 1 4.8526 0.5174 0.5020 50 1 5.3525 -1.1965 -1.6168 51 1 6.0753 0.4317 -1.4837 52 1 4.9037 1.1024 -3.3280 53 1 4.1810 -0.5258 -3.4611 54 1 2.7073 1.7466 -2.8763 55 1 2.2398 0.1079 -2.3232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265399184.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:19 Heat of formation + Delta-G solvation = -81.359203 kcal Electronic energy + Delta-G solvation = -31729.476686 eV Core-core repulsion = 27766.131001 eV Total energy + Delta-G solvation = -3963.345685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74436 -39.71780 -38.64810 -37.77125 -37.14273 -34.59507 -33.01591 -32.44899 -31.35990 -29.54893 -28.17730 -27.64539 -27.54872 -26.93110 -25.31745 -23.83402 -22.65515 -21.48320 -21.12995 -20.96457 -20.09627 -18.71470 -18.20603 -17.82723 -17.25616 -16.88033 -16.52801 -16.38710 -16.01849 -15.73765 -15.64913 -15.37560 -15.10917 -14.92633 -14.59150 -14.51728 -14.26617 -14.19876 -13.92815 -13.70813 -13.63442 -13.33347 -13.08522 -12.72895 -12.67821 -12.52412 -12.30154 -12.26417 -12.11456 -12.06368 -12.00462 -11.91925 -11.86893 -11.73768 -11.69904 -11.59018 -11.47998 -11.27137 -11.20005 -11.16820 -10.37316 -10.23494 -9.65470 -8.93392 -7.99222 -5.10138 1.42193 1.47187 1.52956 1.54251 1.88257 2.50724 2.75934 3.13609 3.33149 3.58738 3.66202 3.67512 3.84442 3.89424 3.97754 4.03179 4.07316 4.25965 4.32257 4.39482 4.44334 4.45094 4.48969 4.54940 4.59452 4.65759 4.67065 4.71421 4.76033 4.79562 4.81534 4.85520 4.86914 4.90086 4.90388 4.98325 5.01707 5.16741 5.20160 5.24289 5.29816 5.37470 5.38894 5.49765 5.50985 5.53894 5.57132 5.57485 5.62272 5.78191 5.99419 6.24565 6.41698 7.11872 7.13596 7.90274 8.29240 9.10086 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.002677 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.546336 B =10455.908684 C =11012.639414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.370 6.370 3 C 0.085 3.915 4 H 0.106 0.894 5 C 0.487 3.513 6 O -0.581 6.581 7 N -0.604 5.604 8 C 0.102 3.898 9 C -0.129 4.129 10 C -0.106 4.106 11 C -0.107 4.107 12 H 0.027 0.973 13 C 0.157 3.843 14 N -0.616 5.616 15 C 0.168 3.832 16 C -0.266 4.266 17 H 0.066 0.934 18 C -0.040 4.040 19 N -0.914 5.914 20 Si 0.937 3.063 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.277 1.277 24 C 0.125 3.875 25 C -0.092 4.092 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.119 4.119 29 C -0.112 4.112 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.067 0.933 41 H -0.001 1.001 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.078 0.922 53 H 0.067 0.933 54 H 0.087 0.913 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -12.634 -21.400 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.288 6.288 3 C 0.024 3.976 4 H 0.123 0.877 5 C 0.275 3.725 6 O -0.460 6.460 7 N -0.338 5.338 8 C -0.019 4.019 9 C -0.167 4.167 10 C -0.144 4.144 11 C -0.130 4.130 12 H 0.046 0.954 13 C 0.030 3.970 14 N -0.339 5.339 15 C 0.023 3.977 16 C -0.396 4.396 17 H 0.084 0.916 18 C -0.237 4.237 19 N -0.561 5.561 20 Si 0.766 3.234 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.202 1.202 24 C 0.002 3.998 25 C -0.110 4.110 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.150 4.150 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.133 0.867 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.096 0.904 53 H 0.086 0.914 54 H 0.105 0.895 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.217 -13.090 -20.918 26.708 hybrid contribution -1.441 0.390 1.622 2.204 sum 8.777 -12.700 -19.296 24.711 Atomic orbital electron populations 1.23000 0.79872 1.03842 1.00428 1.87946 1.20881 1.25679 1.94262 1.22058 0.98365 0.86859 0.90344 0.87677 1.21964 0.76341 0.81358 0.92799 1.90665 1.54325 1.52632 1.48418 1.48281 1.64219 1.12573 1.08702 1.22318 1.02091 0.88266 0.89231 1.21975 0.99444 0.97708 0.97562 1.21492 1.01258 0.97782 0.93856 1.21989 0.98252 0.94726 0.97985 0.95397 1.20895 0.94388 0.88511 0.93166 1.44284 1.20939 1.02184 1.66471 1.20839 0.93499 0.85782 0.97538 1.19348 0.99961 0.92417 1.27827 0.91639 1.25258 1.00721 0.96384 1.01295 1.70419 1.44482 1.05856 1.35299 0.85692 0.77325 0.77335 0.83070 1.21469 1.22408 1.20176 1.21485 0.99905 0.95564 0.82851 1.22542 0.91952 1.01116 0.95395 1.22269 0.97075 0.98311 0.97815 1.22112 0.98500 1.01281 0.93966 1.22101 0.95422 1.01105 0.97062 1.22371 0.98170 1.01544 0.92895 0.95791 0.91259 0.88300 0.88340 0.87278 0.93769 0.88236 0.93395 0.90656 0.94427 0.91463 0.98329 0.95013 0.94750 0.94055 0.92105 0.89446 0.86730 0.92729 0.93426 0.92083 0.91098 0.90360 0.91435 0.89459 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.79 113.37 1.22 1.71 16 2 O -0.37 -9.02 8.01 -129.99 -1.04 -10.06 16 3 C 0.09 1.80 1.52 29.85 0.05 1.85 16 4 H 0.11 1.77 7.07 -2.39 -0.02 1.75 16 5 C 0.49 14.29 6.69 87.66 0.59 14.88 16 6 O -0.58 -22.89 15.92 15.95 0.25 -22.64 16 7 N -0.60 -15.70 2.97 -818.16 -2.43 -18.13 16 8 C 0.10 1.79 4.96 86.51 0.43 2.22 16 9 C -0.13 -2.89 6.10 30.82 0.19 -2.71 16 10 C -0.11 -3.19 4.78 30.62 0.15 -3.04 16 11 C -0.11 -3.78 2.54 -10.73 -0.03 -3.80 16 12 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 13 C 0.16 6.21 5.18 86.38 0.45 6.66 16 14 N -0.62 -30.46 2.76 -726.93 -2.01 -32.47 16 15 C 0.17 8.04 8.07 127.77 1.03 9.07 16 16 C -0.27 -14.97 9.64 84.03 0.81 -14.16 16 17 H 0.07 3.74 8.02 -2.91 -0.02 3.71 16 18 C -0.04 -2.30 4.85 84.86 0.41 -1.89 16 19 N -0.91 -53.77 10.80 21.65 0.23 -53.53 16 20 Si 0.94 45.79 29.67 68.60 2.04 47.83 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 24 C 0.13 3.77 5.71 86.35 0.49 4.26 16 25 C -0.09 -1.43 2.27 -9.51 -0.02 -1.46 16 26 C -0.12 -2.26 5.79 31.67 0.18 -2.07 16 27 C -0.12 -1.67 6.80 31.32 0.21 -1.46 16 28 C -0.12 -1.28 6.80 31.32 0.21 -1.07 16 29 C -0.11 -1.32 6.23 31.66 0.20 -1.12 16 30 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.33 4.71 -2.39 -0.01 1.32 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.82 5.48 -2.39 -0.01 1.80 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.54 8.04 -2.38 -0.02 1.52 16 40 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 41 H 0.00 -0.07 6.59 -2.39 -0.02 -0.09 16 42 H 0.03 1.70 6.17 -2.39 -0.01 1.68 16 43 H 0.03 1.37 7.83 -2.39 -0.02 1.35 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.06 2.17 7.01 -2.39 -0.02 2.15 16 46 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 47 H 0.11 1.38 5.52 -2.39 -0.01 1.37 16 48 H 0.05 1.34 7.14 -2.39 -0.02 1.32 16 49 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 55 H 0.07 0.93 7.41 -2.39 -0.02 0.91 16 Total: -1.00 -73.42 409.46 4.46 -68.96 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.84 Total: 12.17 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.57 Total: 7.87 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.20 Total: -104.13 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.79 Total: -32.70 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.04 Total: 47.83 kcal Total: -73.42 4.46 -68.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265399184.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.402 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds