Wall clock time and date at job start Tue Mar 31 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99731 * 2 1 4 4 H 1.08996 * 109.46963 * 10.87740 * 3 2 1 5 5 C 1.50698 * 109.46748 * 130.87388 * 3 2 1 6 6 O 1.21277 * 120.00204 * 9.93335 * 5 3 2 7 7 N 1.34776 * 119.99781 * 189.93263 * 5 3 2 8 8 C 1.46920 * 120.63416 * 5.11678 * 7 5 3 9 9 C 1.53183 * 108.78116 * 233.58688 * 8 7 5 10 10 C 1.53049 * 109.31233 * 305.36421 * 9 8 7 11 11 C 1.53042 * 109.53439 * 61.36309 * 10 9 8 12 12 H 1.09000 * 109.49996 * 58.62400 * 11 10 9 13 13 C 1.52998 * 109.49274 * 178.68442 * 11 10 9 14 14 N 1.46498 * 109.47428 * 294.99818 * 13 11 10 15 15 C 1.46497 * 120.00012 * 90.00047 * 14 13 11 16 16 C 1.36945 * 120.00215 * 270.00469 * 14 13 11 17 17 H 1.08001 * 119.99668 * 32.94403 * 16 14 13 18 18 C 1.38810 * 119.99943 * 212.95502 * 16 14 13 19 19 N 1.31614 * 120.00394 * 5.80919 * 18 16 14 20 20 Si 1.86804 * 119.99565 * 185.81487 * 18 16 14 21 21 H 1.48493 * 109.47137 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46703 * 119.99950 * 20 18 16 23 23 H 1.48499 * 109.46765 * 239.99353 * 20 18 16 24 24 C 1.46932 * 120.62883 * 184.83770 * 7 5 3 25 25 C 1.52999 * 109.47344 * 250.87581 * 3 2 1 26 26 C 1.54888 * 110.59531 * 304.61360 * 25 3 2 27 27 C 1.54896 * 102.74747 * 156.67849 * 26 25 3 28 28 C 1.54268 * 104.19400 * 322.05631 * 27 26 25 29 29 C 1.53872 * 106.59771 * 23.60796 * 28 27 26 30 30 H 1.08998 * 109.46692 * 176.30447 * 1 2 3 31 31 H 1.08999 * 109.47119 * 296.30457 * 1 2 3 32 32 H 1.09002 * 109.47052 * 56.30520 * 1 2 3 33 33 H 1.09001 * 109.58408 * 353.37756 * 8 7 5 34 34 H 1.09005 * 109.58993 * 113.65500 * 8 7 5 35 35 H 1.09003 * 109.50169 * 65.31359 * 9 8 7 36 36 H 1.08993 * 109.50372 * 185.38205 * 9 8 7 37 37 H 1.08996 * 109.45911 * 181.38018 * 10 9 8 38 38 H 1.08997 * 109.45848 * 301.34428 * 10 9 8 39 39 H 1.09001 * 109.47409 * 55.00241 * 13 11 10 40 40 H 1.09004 * 109.46691 * 175.00042 * 13 11 10 41 41 H 1.09004 * 109.47262 * 95.15551 * 15 14 13 42 42 H 1.09005 * 109.47419 * 215.15490 * 15 14 13 43 43 H 1.08993 * 109.47125 * 335.15437 * 15 14 13 44 44 H 0.96996 * 120.00350 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.58646 * 246.19880 * 24 7 5 46 46 H 1.08996 * 109.58469 * 6.62903 * 24 7 5 47 47 H 1.08994 * 110.43247 * 181.99676 * 25 3 2 48 48 H 1.09006 * 110.75741 * 274.99037 * 26 25 3 49 49 H 1.09001 * 110.76052 * 38.36156 * 26 25 3 50 50 H 1.08996 * 110.48614 * 203.37969 * 27 26 25 51 51 H 1.09001 * 110.48796 * 80.73291 * 27 26 25 52 52 H 1.09004 * 110.03208 * 264.32952 * 28 27 26 53 53 H 1.08998 * 110.07242 * 142.91389 * 28 27 26 54 54 H 1.09002 * 110.03828 * 240.71332 * 29 28 27 55 55 H 1.09006 * 110.06970 * 119.30605 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2360 2.0478 0.1939 5 6 3.0639 1.3862 1.0744 6 8 3.4225 0.3801 1.6488 7 7 3.6077 2.5765 1.3968 8 6 3.1063 3.8174 0.7908 9 6 4.2838 4.5720 0.1659 10 6 5.3688 4.7832 1.2245 11 6 5.8728 3.4253 1.7188 12 1 6.2654 2.8546 0.8772 13 6 6.9801 3.6373 2.7530 14 7 8.1351 4.2682 2.1095 15 6 8.2390 5.7287 2.0602 16 6 9.1177 3.4928 1.5540 17 1 8.8670 2.5428 1.1056 18 6 10.4359 3.9277 1.5675 19 7 10.7592 5.0282 2.2130 20 14 11.7508 2.9510 0.6694 21 1 11.1331 1.7629 0.0276 22 1 12.3785 3.8056 -0.3703 23 1 12.7861 2.5081 1.6374 24 6 4.7094 2.6583 2.3656 25 6 2.6494 1.5793 -1.3629 26 6 3.6733 0.4723 -1.7167 27 6 3.7409 0.5506 -3.2622 28 6 2.2864 0.8348 -3.6905 29 6 1.5924 1.4888 -2.4829 30 1 -0.3632 -1.0255 -0.0662 31 1 -0.3633 0.4554 0.9212 32 1 -0.3633 0.5701 -0.8550 33 1 2.3750 3.5776 0.0190 34 1 2.6390 4.4356 1.5574 35 1 4.6910 3.9903 -0.6612 36 1 3.9418 5.5388 -0.2031 37 1 6.1974 5.3414 0.7889 38 1 4.9543 5.3436 2.0624 39 1 6.6126 4.2813 3.5520 40 1 7.2771 2.6749 3.1697 41 1 8.8454 6.0783 2.8957 42 1 8.7060 6.0283 1.1219 43 1 7.2429 6.1662 2.1261 44 1 11.6802 5.3323 2.2221 45 1 4.3724 3.1850 3.2584 46 1 5.0362 1.6535 2.6330 47 1 3.1286 2.5582 -1.3686 48 1 4.6461 0.6907 -1.2760 49 1 3.3128 -0.5047 -1.3947 50 1 4.0825 -0.3975 -3.6775 51 1 4.3964 1.3634 -3.5747 52 1 1.7845 -0.0974 -3.9497 53 1 2.2734 1.5150 -4.5421 54 1 0.7537 0.8741 -2.1560 55 1 1.2427 2.4868 -2.7476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265399185.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:24 Heat of formation + Delta-G solvation = -88.950216 kcal Electronic energy + Delta-G solvation = -32040.455403 eV Core-core repulsion = 28076.780546 eV Total energy + Delta-G solvation = -3963.674856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73891 -39.79494 -38.68626 -37.63857 -37.09910 -34.53449 -32.96466 -32.46313 -31.33371 -29.67516 -28.14817 -27.88601 -27.43415 -26.80505 -25.22867 -23.80810 -22.62185 -21.65716 -21.22977 -20.93368 -19.96709 -18.66500 -18.26605 -17.82729 -17.24221 -16.95732 -16.52449 -16.44911 -15.92261 -15.71774 -15.58231 -15.32404 -15.18702 -14.92281 -14.55969 -14.52514 -14.36775 -14.11429 -13.92951 -13.62506 -13.55346 -13.27268 -12.94582 -12.83167 -12.59863 -12.46071 -12.43664 -12.35751 -12.16406 -12.11923 -12.02616 -11.97978 -11.91816 -11.81936 -11.65390 -11.54334 -11.43994 -11.26654 -11.16947 -10.94575 -10.65926 -10.29620 -9.63510 -8.60656 -7.82761 -5.43316 1.40926 1.42795 1.51946 1.53321 1.83197 2.47342 2.88655 3.28049 3.37152 3.57106 3.62499 3.70050 3.82195 3.87089 3.95181 4.03663 4.08696 4.28237 4.30794 4.40201 4.41002 4.46469 4.53022 4.57450 4.57599 4.63614 4.67307 4.70279 4.73817 4.81620 4.82351 4.85289 4.88868 4.91488 4.95133 4.97073 5.01920 5.09834 5.22706 5.23058 5.25490 5.29583 5.34663 5.46164 5.49519 5.50243 5.55178 5.59170 5.64351 5.75476 6.08830 6.37789 6.44326 7.15481 7.17739 7.87765 8.34226 9.16372 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.003147 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.928679 B = 8895.988998 C = 9662.834063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.383 6.383 3 C 0.088 3.912 4 H 0.120 0.880 5 C 0.500 3.500 6 O -0.579 6.579 7 N -0.605 5.605 8 C 0.100 3.900 9 C -0.128 4.128 10 C -0.106 4.106 11 C -0.102 4.102 12 H 0.035 0.965 13 C 0.156 3.844 14 N -0.611 5.611 15 C 0.174 3.826 16 C -0.265 4.265 17 H 0.053 0.947 18 C -0.042 4.042 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.289 1.289 24 C 0.126 3.874 25 C -0.102 4.102 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.117 4.117 29 C -0.115 4.115 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.003 0.997 42 H 0.006 0.994 43 H 0.044 0.956 44 H 0.249 0.751 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.064 0.936 52 H 0.065 0.935 53 H 0.077 0.923 54 H 0.076 0.924 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.924 -1.088 -9.703 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.138 0.862 5 C 0.289 3.711 6 O -0.458 6.458 7 N -0.338 5.338 8 C -0.021 4.021 9 C -0.166 4.166 10 C -0.144 4.144 11 C -0.124 4.124 12 H 0.053 0.947 13 C 0.030 3.970 14 N -0.335 5.335 15 C 0.029 3.971 16 C -0.396 4.396 17 H 0.070 0.930 18 C -0.238 4.238 19 N -0.577 5.577 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.215 1.215 24 C 0.002 3.998 25 C -0.121 4.121 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.155 4.155 29 C -0.152 4.152 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.117 0.883 48 H 0.050 0.950 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.083 0.917 52 H 0.084 0.916 53 H 0.096 0.904 54 H 0.095 0.905 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.500 -1.703 -9.384 28.164 hybrid contribution 1.653 -0.561 -0.018 1.745 sum -24.847 -2.264 -9.402 26.663 Atomic orbital electron populations 1.23243 0.79045 1.04294 1.01330 1.88028 1.21588 1.25794 1.94636 1.21960 0.94853 0.87603 0.92939 0.86247 1.21409 0.83516 0.82611 0.83601 1.90669 1.63621 1.36623 1.54891 1.48215 1.34972 1.07038 1.43587 1.22172 0.96658 0.84259 0.99002 1.21909 0.95396 1.01586 0.97687 1.21520 0.98151 0.95618 0.99073 1.21977 0.94662 0.97068 0.98699 0.94659 1.20815 0.87016 0.96114 0.93079 1.43910 1.21478 1.02037 1.66030 1.20651 0.95816 0.82812 0.97828 1.19323 0.87161 1.02552 1.30543 0.92963 1.25946 0.99112 0.98764 0.99953 1.70155 1.17461 1.24639 1.45493 0.85293 0.79403 0.78445 0.77866 1.19781 1.21238 1.21523 1.21556 0.86245 1.00466 0.91504 1.22503 0.97170 0.99821 0.92582 1.22383 0.97316 0.99147 0.96745 1.22347 0.98169 1.01496 0.94155 1.22076 0.94217 1.01051 0.98133 1.22262 0.97254 1.02375 0.93321 0.88659 0.93373 0.91036 0.87353 0.88693 0.93037 0.87896 0.92805 0.90855 0.92761 0.95368 0.97903 0.97502 0.93735 0.94121 0.89686 0.92299 0.88343 0.95046 0.92234 0.91986 0.91722 0.91577 0.90430 0.90531 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.26 113.37 1.16 1.38 16 2 O -0.38 -8.86 8.50 -130.13 -1.11 -9.96 16 3 C 0.09 1.77 1.60 29.85 0.05 1.82 16 4 H 0.12 1.50 6.66 -2.39 -0.02 1.48 16 5 C 0.50 14.60 6.52 87.66 0.57 15.17 16 6 O -0.58 -23.13 15.96 15.83 0.25 -22.88 16 7 N -0.60 -15.39 2.97 -818.09 -2.43 -17.81 16 8 C 0.10 1.62 5.53 86.36 0.48 2.10 16 9 C -0.13 -2.51 5.95 30.67 0.18 -2.33 16 10 C -0.11 -2.94 4.21 30.62 0.13 -2.81 16 11 C -0.10 -3.51 2.56 -10.57 -0.03 -3.54 16 12 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 13 C 0.16 6.49 5.14 86.38 0.44 6.94 16 14 N -0.61 -31.04 2.72 -726.94 -1.97 -33.02 16 15 C 0.17 8.43 7.92 127.77 1.01 9.44 16 16 C -0.27 -15.14 9.57 84.03 0.80 -14.34 16 17 H 0.05 3.03 7.83 -2.91 -0.02 3.01 16 18 C -0.04 -2.41 5.25 84.86 0.45 -1.96 16 19 N -0.93 -56.03 10.97 21.65 0.24 -55.79 16 20 Si 0.96 46.58 29.56 68.60 2.03 48.61 16 21 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C 0.13 3.81 5.73 86.51 0.50 4.31 16 25 C -0.10 -1.86 2.34 -9.72 -0.02 -1.88 16 26 C -0.12 -2.95 5.77 31.89 0.18 -2.77 16 27 C -0.12 -2.42 6.83 31.67 0.22 -2.21 16 28 C -0.12 -1.63 6.80 31.32 0.21 -1.42 16 29 C -0.11 -1.41 6.28 31.32 0.20 -1.22 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.57 6.18 -2.39 -0.01 0.56 16 33 H 0.11 1.14 4.64 -2.39 -0.01 1.13 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.05 1.18 7.61 -2.39 -0.02 1.17 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.80 5.87 -2.39 -0.01 1.79 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 2.03 8.07 -2.39 -0.02 2.02 16 40 H 0.03 1.25 8.04 -2.38 -0.02 1.23 16 41 H 0.00 0.15 7.17 -2.39 -0.02 0.13 16 42 H 0.01 0.33 7.80 -2.38 -0.02 0.31 16 43 H 0.04 1.76 6.20 -2.39 -0.01 1.74 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.06 2.15 7.03 -2.39 -0.02 2.13 16 47 H 0.10 1.67 5.60 -2.39 -0.01 1.65 16 48 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.06 1.72 7.24 -2.39 -0.02 1.70 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 53 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 54 H 0.08 0.86 4.88 -2.39 -0.01 0.85 16 55 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -76.80 405.26 4.40 -72.40 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.85 Total: 11.77 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.53 Total: 6.69 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -4.16 Total: -106.62 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.85 Total: -32.84 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.80 4.40 -72.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265399185.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.551 kcal (2) G-P(sol) polarization free energy of solvation -76.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds