Wall clock time and date at job start Tue Mar 31 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99907 * 2 1 4 4 H 1.09004 * 109.47694 * 29.99662 * 3 2 1 5 5 C 1.50697 * 109.47401 * 269.99522 * 3 2 1 6 6 O 1.21287 * 119.99898 * 351.52634 * 5 3 2 7 7 N 1.34778 * 120.00454 * 171.52292 * 5 3 2 8 8 C 1.46928 * 120.62801 * 355.98847 * 7 5 3 9 9 C 1.53201 * 108.77213 * 126.36884 * 8 7 5 10 10 C 1.53037 * 109.30855 * 54.63575 * 9 8 7 11 11 C 1.53069 * 109.66242 * 298.69627 * 10 9 8 12 12 H 1.08998 * 109.38899 * 301.28232 * 11 10 9 13 13 C 1.53006 * 109.62538 * 181.17328 * 11 10 9 14 14 N 1.46494 * 109.46999 * 65.10427 * 13 11 10 15 15 C 1.46496 * 120.00703 * 270.00248 * 14 13 11 16 16 C 1.36941 * 119.99844 * 90.00055 * 14 13 11 17 17 H 1.08006 * 120.00181 * 356.67091 * 16 14 13 18 18 C 1.38814 * 120.00373 * 176.66049 * 16 14 13 19 19 N 1.31619 * 119.99135 * 34.13005 * 18 16 14 20 20 Si 1.86794 * 120.00508 * 214.12893 * 18 16 14 21 21 H 1.48501 * 109.46987 * 95.00156 * 20 18 16 22 22 H 1.48499 * 109.47391 * 215.00132 * 20 18 16 23 23 H 1.48502 * 109.47180 * 335.00357 * 20 18 16 24 24 C 1.46929 * 120.63121 * 175.97056 * 7 5 3 25 25 C 1.53003 * 109.47206 * 149.99507 * 3 2 1 26 26 C 1.54268 * 110.02984 * 59.09765 * 25 3 2 27 27 C 1.54964 * 104.15785 * 217.14016 * 26 25 3 28 28 C 1.54884 * 102.77947 * 37.88631 * 27 26 25 29 29 C 1.53871 * 110.03330 * 301.87978 * 25 3 2 30 30 H 1.09006 * 109.46535 * 59.99981 * 1 2 3 31 31 H 1.09001 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.00489 * 1 2 3 33 33 H 1.08997 * 109.58955 * 246.15623 * 8 7 5 34 34 H 1.08997 * 109.58366 * 6.58616 * 8 7 5 35 35 H 1.08993 * 109.49281 * 174.58462 * 9 8 7 36 36 H 1.08997 * 109.49788 * 294.68772 * 9 8 7 37 37 H 1.08997 * 109.46240 * 58.66057 * 10 9 8 38 38 H 1.09007 * 109.45771 * 178.60923 * 10 9 8 39 39 H 1.08999 * 109.46830 * 185.11047 * 13 11 10 40 40 H 1.09004 * 109.46753 * 305.10708 * 13 11 10 41 41 H 1.09005 * 109.47300 * 95.15691 * 15 14 13 42 42 H 1.09000 * 109.47829 * 215.16205 * 15 14 13 43 43 H 1.09010 * 109.46965 * 335.16497 * 15 14 13 44 44 H 0.97007 * 119.99779 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.58502 * 353.41249 * 24 7 5 46 46 H 1.08995 * 109.58708 * 113.70532 * 24 7 5 47 47 H 1.08998 * 110.01779 * 180.48428 * 25 3 2 48 48 H 1.09003 * 110.48349 * 335.78191 * 26 25 3 49 49 H 1.08996 * 110.49293 * 98.42702 * 26 25 3 50 50 H 1.09002 * 110.71650 * 279.56685 * 27 26 25 51 51 H 1.09001 * 110.92303 * 156.29906 * 27 26 25 52 52 H 1.09008 * 110.48651 * 203.40496 * 28 27 26 53 53 H 1.08993 * 110.48868 * 80.76501 * 28 27 26 54 54 H 1.08992 * 110.03430 * 238.56726 * 29 25 3 55 55 H 1.09003 * 110.03215 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2147 1.7643 -1.4208 6 8 2.0400 0.9912 -2.3388 7 7 2.5915 3.0339 -1.6713 8 6 2.7220 4.0058 -0.5772 9 6 4.1191 4.6315 -0.6376 10 6 4.3505 5.2193 -2.0315 11 6 4.2743 4.1059 -3.0792 12 1 5.0246 3.3474 -2.8562 13 6 4.5347 4.6897 -4.4693 14 7 5.9101 5.1891 -4.5395 15 6 6.2058 6.5756 -4.1705 16 6 6.9195 4.3597 -4.9499 17 1 6.7109 3.3231 -5.1702 18 6 8.2109 4.8511 -5.0829 19 7 8.6479 5.7832 -4.2627 20 14 9.3283 4.1898 -6.4257 21 1 9.2488 5.0742 -7.6160 22 1 10.7278 4.1508 -5.9306 23 1 8.8967 2.8186 -6.7982 24 6 2.8801 3.4721 -3.0438 25 6 3.3589 1.2633 0.7214 26 6 4.3036 0.2673 0.0176 27 6 5.0860 -0.3977 1.1782 28 6 4.0081 -0.5391 2.2813 29 6 3.1713 0.7512 2.1602 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9677 4.7846 -0.6884 34 1 2.5894 3.4995 0.3789 35 1 4.1959 5.4226 0.1082 36 1 4.8692 3.8668 -0.4362 37 1 3.5853 5.9664 -2.2422 38 1 5.3344 5.6870 -2.0696 39 1 4.3907 3.9143 -5.2217 40 1 3.8406 5.5094 -4.6549 41 1 6.5236 6.6146 -3.1286 42 1 7.0024 6.9593 -4.8079 43 1 5.3112 7.1849 -4.3005 44 1 9.5505 6.1264 -4.3554 45 1 2.8518 2.6137 -3.7149 46 1 2.1372 4.2056 -3.3569 47 1 3.8064 2.2571 0.7341 48 1 3.7301 -0.4789 -0.5324 49 1 4.9850 0.7944 -0.6501 50 1 5.8996 0.2457 1.5132 51 1 5.4659 -1.3754 0.8817 52 1 4.4743 -0.6005 3.2648 53 1 3.3867 -1.4155 2.0974 54 1 3.5285 1.4961 2.8712 55 1 2.1193 0.5331 2.3447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265399187.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:32 Heat of formation + Delta-G solvation = -81.550639 kcal Electronic energy + Delta-G solvation = -32153.606115 eV Core-core repulsion = 28190.252129 eV Total energy + Delta-G solvation = -3963.353987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.79168 -39.72941 -38.65996 -37.72215 -37.14076 -34.57518 -33.00604 -32.47791 -31.36245 -29.60089 -28.17477 -27.64847 -27.52338 -26.90106 -25.27210 -23.79438 -22.64495 -21.73289 -21.23777 -20.85760 -19.97177 -18.72637 -18.34192 -17.85671 -17.09442 -16.89398 -16.52702 -16.38674 -16.06005 -15.71792 -15.55343 -15.36998 -15.27801 -14.97475 -14.59306 -14.56765 -14.16854 -14.11466 -14.02117 -13.71759 -13.48835 -13.34275 -13.08649 -12.72714 -12.68032 -12.49507 -12.32972 -12.27189 -12.10971 -12.01476 -11.96603 -11.93576 -11.86624 -11.72340 -11.65368 -11.61946 -11.57185 -11.35622 -11.29293 -11.19213 -10.37350 -10.21882 -9.64828 -8.92918 -7.98362 -5.10019 1.42328 1.47005 1.50549 1.54252 1.92758 2.51040 2.75243 3.14445 3.35382 3.61291 3.63188 3.69331 3.79828 3.85398 3.94410 4.04729 4.07549 4.25950 4.29227 4.40121 4.42939 4.46992 4.51922 4.55337 4.58813 4.61430 4.65502 4.69477 4.76434 4.81214 4.83782 4.85676 4.88667 4.89429 4.90689 4.96484 4.98399 5.09177 5.20310 5.23872 5.25954 5.30771 5.38793 5.44472 5.51024 5.52084 5.54439 5.58523 5.62451 5.78556 6.04123 6.25002 6.42745 7.12329 7.13965 7.90592 8.29325 9.10740 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.003163 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.081524 B = 8848.862809 C = 9466.119539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.087 3.913 4 H 0.117 0.883 5 C 0.485 3.515 6 O -0.580 6.580 7 N -0.605 5.605 8 C 0.101 3.899 9 C -0.129 4.129 10 C -0.106 4.106 11 C -0.107 4.107 12 H 0.027 0.973 13 C 0.157 3.843 14 N -0.615 5.615 15 C 0.168 3.832 16 C -0.267 4.267 17 H 0.065 0.935 18 C -0.039 4.039 19 N -0.915 5.915 20 Si 0.936 3.064 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.277 1.277 24 C 0.125 3.875 25 C -0.087 4.087 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.116 4.116 29 C -0.106 4.106 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.067 0.933 41 H -0.001 1.001 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.250 0.750 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.052 0.948 49 H 0.034 0.966 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.080 0.920 53 H 0.061 0.939 54 H 0.086 0.914 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.011 -4.579 17.839 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C 0.026 3.974 4 H 0.135 0.865 5 C 0.274 3.726 6 O -0.459 6.459 7 N -0.338 5.338 8 C -0.020 4.020 9 C -0.167 4.167 10 C -0.143 4.143 11 C -0.129 4.129 12 H 0.045 0.955 13 C 0.030 3.970 14 N -0.338 5.338 15 C 0.024 3.976 16 C -0.396 4.396 17 H 0.083 0.917 18 C -0.235 4.235 19 N -0.561 5.561 20 Si 0.765 3.235 21 H -0.214 1.214 22 H -0.224 1.224 23 H -0.202 1.202 24 C 0.002 3.998 25 C -0.106 4.106 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.153 4.153 29 C -0.143 4.143 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.119 0.881 48 H 0.071 0.929 49 H 0.053 0.947 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.098 0.902 53 H 0.080 0.920 54 H 0.105 0.895 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.878 -5.081 17.374 25.442 hybrid contribution 1.192 -0.293 -1.441 1.893 sum -16.686 -5.374 15.933 23.689 Atomic orbital electron populations 1.23026 0.79619 1.04072 1.00517 1.87987 1.21199 1.25514 1.94228 1.22171 0.97956 0.86951 0.90312 0.86516 1.22040 0.76174 0.81284 0.93130 1.90664 1.52777 1.54448 1.48060 1.48299 1.66368 1.10301 1.08868 1.22172 0.97808 0.92252 0.89751 1.21892 0.96476 1.00737 0.97551 1.21485 1.01764 0.97029 0.94038 1.21994 0.94804 0.97541 0.98530 0.95451 1.20890 0.85010 0.97153 0.93901 1.44269 1.03060 1.08843 1.77627 1.20836 0.96274 0.83447 0.97059 1.19359 0.89130 0.93582 1.37555 0.91711 1.25232 0.97831 0.99760 1.00689 1.70418 1.16754 1.34327 1.34576 0.85697 0.78018 0.78052 0.81696 1.21428 1.22366 1.20217 1.21482 0.96148 0.99027 0.83142 1.22084 0.91500 1.00884 0.96124 1.22305 0.97440 0.98252 0.97865 1.22489 0.98078 1.00204 0.95287 1.22287 0.96522 0.98058 0.98461 1.22103 1.01323 0.97542 0.93379 0.95328 0.88409 0.91031 0.88509 0.87321 0.88202 0.93592 0.90750 0.93399 0.94498 0.91483 0.98328 0.94943 0.94833 0.94074 0.92217 0.89495 0.88105 0.92920 0.94704 0.91178 0.92097 0.90166 0.92036 0.89501 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.81 113.37 1.23 1.62 16 2 O -0.37 -8.73 8.35 -130.08 -1.09 -9.82 16 3 C 0.09 1.83 1.22 29.85 0.04 1.86 16 4 H 0.12 1.57 6.95 -2.39 -0.02 1.55 16 5 C 0.48 14.14 6.34 87.66 0.56 14.70 16 6 O -0.58 -22.63 15.95 15.85 0.25 -22.38 16 7 N -0.60 -15.74 2.97 -818.88 -2.44 -18.17 16 8 C 0.10 1.78 5.54 86.36 0.48 2.26 16 9 C -0.13 -2.89 5.92 30.67 0.18 -2.71 16 10 C -0.11 -3.19 4.78 30.63 0.15 -3.04 16 11 C -0.11 -3.77 2.55 -10.70 -0.03 -3.80 16 12 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 13 C 0.16 6.25 5.19 86.38 0.45 6.70 16 14 N -0.61 -30.55 2.76 -726.91 -2.01 -32.55 16 15 C 0.17 8.08 8.10 127.77 1.03 9.12 16 16 C -0.27 -15.09 9.65 84.03 0.81 -14.28 16 17 H 0.06 3.72 8.02 -2.91 -0.02 3.70 16 18 C -0.04 -2.23 4.85 84.86 0.41 -1.82 16 19 N -0.91 -53.90 10.80 21.65 0.23 -53.67 16 20 Si 0.94 46.01 29.67 68.60 2.04 48.04 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.13 3.79 5.70 86.36 0.49 4.29 16 25 C -0.09 -1.71 2.44 -10.07 -0.02 -1.74 16 26 C -0.12 -3.21 5.61 31.70 0.18 -3.03 16 27 C -0.12 -2.59 6.91 31.91 0.22 -2.37 16 28 C -0.12 -1.87 6.83 31.67 0.22 -1.66 16 29 C -0.11 -1.50 6.20 31.32 0.19 -1.31 16 30 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.32 4.47 -2.39 -0.01 1.31 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.23 7.71 -2.39 -0.02 1.21 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.83 5.48 -2.38 -0.01 1.81 16 39 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 40 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 41 H 0.00 -0.07 6.56 -2.38 -0.02 -0.09 16 42 H 0.03 1.74 6.16 -2.39 -0.01 1.72 16 43 H 0.03 1.34 7.84 -2.38 -0.02 1.32 16 44 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 45 H 0.06 2.15 7.03 -2.39 -0.02 2.13 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.10 1.82 5.37 -2.39 -0.01 1.81 16 48 H 0.05 1.67 7.19 -2.39 -0.02 1.65 16 49 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 54 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.08 0.97 7.36 -2.39 -0.02 0.96 16 Total: -1.00 -74.00 408.73 4.42 -69.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.84 Total: 14.17 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.58 Total: 4.80 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.21 Total: -104.39 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.83 Total: -32.20 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.04 Total: 48.04 kcal Total: -74.00 4.42 -69.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265399187.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.969 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds