Wall clock time and date at job start Tue Mar 31 2020 22:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00353 * 2 1 4 4 H 1.08999 * 109.46717 * 9.00439 * 3 2 1 5 5 C 1.50701 * 109.47348 * 128.99962 * 3 2 1 6 6 O 1.21284 * 119.99869 * 13.75937 * 5 3 2 7 7 N 1.34771 * 119.99947 * 193.75846 * 5 3 2 8 8 C 1.46929 * 120.63280 * 355.86361 * 7 5 3 9 9 C 1.53188 * 108.77750 * 126.41499 * 8 7 5 10 10 C 1.53037 * 109.34195 * 54.61744 * 9 8 7 11 11 C 1.53046 * 109.53876 * 298.68622 * 10 9 8 12 12 H 1.09000 * 109.49830 * 301.34593 * 11 10 9 13 13 C 1.52998 * 109.49390 * 181.27953 * 11 10 9 14 14 N 1.46504 * 109.47128 * 65.07008 * 13 11 10 15 15 C 1.36935 * 120.00028 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00084 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99947 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46734 * 60.00270 * 19 17 15 21 21 H 1.48499 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47255 * 300.00241 * 19 17 15 23 23 C 1.46931 * 120.63152 * 175.88614 * 7 5 3 24 24 C 1.52999 * 109.47104 * 249.00451 * 3 2 1 25 25 C 1.52998 * 109.47304 * 65.62658 * 24 3 2 26 26 C 1.52999 * 109.47304 * 179.97438 * 25 24 3 27 27 C 1.53002 * 109.47062 * 59.99603 * 26 25 24 28 28 C 1.52998 * 109.47385 * 300.00347 * 27 26 25 29 29 C 1.52999 * 109.47304 * 59.99801 * 28 27 26 30 30 H 1.08998 * 109.47152 * 184.80167 * 1 2 3 31 31 H 1.08992 * 109.47040 * 304.80380 * 1 2 3 32 32 H 1.09004 * 109.46678 * 64.80125 * 1 2 3 33 33 H 1.09002 * 109.58516 * 246.20026 * 8 7 5 34 34 H 1.09001 * 109.58333 * 6.62245 * 8 7 5 35 35 H 1.09005 * 109.49739 * 174.58924 * 9 8 7 36 36 H 1.09001 * 109.49722 * 294.65089 * 9 8 7 37 37 H 1.08993 * 109.49016 * 178.64580 * 10 9 8 38 38 H 1.09008 * 109.43028 * 58.68851 * 10 9 8 39 39 H 1.09002 * 109.46981 * 185.06268 * 13 11 10 40 40 H 1.09000 * 109.47989 * 305.06593 * 13 11 10 41 41 H 0.96996 * 119.99838 * 359.97438 * 14 13 11 42 42 H 0.96993 * 119.99946 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.58723 * 113.79618 * 23 7 5 44 44 H 1.08997 * 109.58511 * 353.37122 * 23 7 5 45 45 H 1.09006 * 109.46629 * 185.62666 * 24 3 2 46 46 H 1.09007 * 109.47045 * 300.00094 * 25 24 3 47 47 H 1.09005 * 109.47357 * 59.99705 * 25 24 3 48 48 H 1.08997 * 109.46703 * 300.00232 * 26 25 24 49 49 H 1.09000 * 109.47038 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47411 * 179.97438 * 27 26 25 51 51 H 1.09007 * 109.46790 * 60.00211 * 27 26 25 52 52 H 1.08995 * 109.46746 * 299.99731 * 28 27 26 53 53 H 1.08999 * 109.46945 * 179.97438 * 28 27 26 54 54 H 1.08994 * 109.47707 * 180.02562 * 29 28 27 55 55 H 1.08998 * 109.47220 * 59.99745 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2309 2.0502 0.1608 5 6 3.0315 1.4006 1.1042 6 8 3.4240 0.3942 1.6556 7 7 3.5086 2.6041 1.4789 8 6 3.1117 3.8233 0.7613 9 6 2.5659 4.8355 1.7732 10 6 3.6054 5.0638 2.8728 11 6 3.8751 3.7465 3.6038 12 1 2.9451 3.3697 4.0295 13 6 4.8907 3.9825 4.7235 14 7 4.3079 4.8711 5.7320 15 6 5.0371 5.2256 6.8355 16 1 6.0416 4.8499 6.9626 17 6 4.4851 6.0680 7.7908 18 7 3.2610 6.5264 7.6357 19 14 5.4795 6.5511 9.2965 20 1 6.7152 7.2549 8.8687 21 1 4.6696 7.4507 10.1569 22 1 5.8440 5.3316 10.0613 23 6 4.4358 2.7219 2.6125 24 6 2.6899 1.5611 -1.3467 25 6 1.6325 1.6037 -2.4517 26 6 2.3121 1.8599 -3.7983 27 6 3.3085 0.7358 -4.0889 28 6 4.3659 0.6932 -2.9839 29 6 3.6863 0.4369 -1.6373 30 1 -0.3633 -1.0240 0.0860 31 1 -0.3633 0.5865 0.8438 32 1 -0.3633 0.4376 -0.9299 33 1 3.9780 4.2461 0.2524 34 1 2.3384 3.5824 0.0318 35 1 2.3574 5.7787 1.2681 36 1 1.6476 4.4490 2.2153 37 1 3.2293 5.8018 3.5813 38 1 4.5311 5.4277 2.4268 39 1 5.1503 3.0298 5.1852 40 1 5.7881 4.4420 4.3093 41 1 3.4056 5.2082 5.6181 42 1 2.8753 7.1147 8.3035 43 1 5.4101 3.0550 2.2546 44 1 4.5362 1.7545 3.1046 45 1 3.2179 2.5141 -1.3121 46 1 1.1045 0.6506 -2.4862 47 1 0.9229 2.4049 -2.2449 48 1 2.8397 2.8130 -3.7634 49 1 1.5588 1.8898 -4.5856 50 1 3.7923 0.9181 -5.0485 51 1 2.7807 -0.2174 -4.1238 52 1 4.8935 1.6463 -2.9491 53 1 5.0754 -0.1080 -3.1908 54 1 4.4395 0.4070 -0.8500 55 1 3.1586 -0.5162 -1.6722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265637323.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:22 Heat of formation + Delta-G solvation = -115.311805 kcal Electronic energy + Delta-G solvation = -31362.839082 eV Core-core repulsion = 27398.021102 eV Total energy + Delta-G solvation = -3964.817981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80576 -39.89620 -38.69965 -37.87069 -36.63885 -34.55420 -33.03282 -32.85334 -31.62822 -31.58528 -28.72613 -27.46508 -26.89546 -25.92811 -24.47944 -23.51076 -23.21455 -22.56206 -21.24654 -20.68532 -20.05986 -19.21433 -18.30214 -17.62822 -17.19124 -16.85067 -16.50133 -16.05108 -15.82034 -15.69414 -15.45040 -15.32115 -15.28357 -15.06474 -14.90282 -14.64814 -14.47110 -14.13990 -13.96221 -13.77575 -13.57459 -13.30777 -13.15070 -13.01160 -12.84341 -12.76186 -12.71676 -12.38891 -12.21098 -12.13694 -11.99263 -11.98646 -11.85549 -11.72436 -11.58911 -11.43624 -11.39627 -11.19648 -11.13070 -10.93300 -10.82025 -10.23805 -9.67883 -9.01535 -7.96675 -5.25542 1.45903 1.49310 1.51357 1.55367 1.77001 2.54983 2.86442 3.36183 3.38138 3.59414 3.70485 3.76259 3.80394 3.87208 3.93406 4.01767 4.04710 4.26772 4.32181 4.37459 4.39360 4.40052 4.40532 4.51841 4.52626 4.55387 4.60595 4.67025 4.68131 4.69337 4.75540 4.78134 4.83204 4.84080 4.85704 4.95239 5.04152 5.17370 5.19348 5.22446 5.26621 5.32153 5.33825 5.38882 5.40936 5.43669 5.45469 5.48552 5.50328 5.62988 6.05313 6.25487 6.40197 7.12419 7.31988 8.06742 8.31505 9.26673 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002288 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.107277 B =12233.963815 C =12386.679406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.381 6.381 3 C 0.082 3.918 4 H 0.111 0.889 5 C 0.501 3.499 6 O -0.576 6.576 7 N -0.605 5.605 8 C 0.101 3.899 9 C -0.129 4.129 10 C -0.107 4.107 11 C -0.092 4.092 12 H 0.050 0.950 13 C 0.159 3.841 14 N -0.741 5.741 15 C -0.248 4.248 16 H 0.074 0.926 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.281 1.281 23 C 0.128 3.872 24 C -0.091 4.091 25 C -0.111 4.111 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.105 4.105 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.010 0.990 40 H 0.029 0.971 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.055 0.945 52 H 0.066 0.934 53 H 0.056 0.944 54 H 0.031 0.969 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 -7.524 -29.553 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.299 6.299 3 C 0.021 3.979 4 H 0.128 0.872 5 C 0.290 3.710 6 O -0.454 6.454 7 N -0.338 5.338 8 C -0.020 4.020 9 C -0.167 4.167 10 C -0.145 4.145 11 C -0.112 4.112 12 H 0.069 0.931 13 C 0.031 3.969 14 N -0.384 5.384 15 C -0.380 4.380 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.207 1.207 23 C 0.005 3.995 24 C -0.109 4.109 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.156 4.156 28 C -0.154 4.154 29 C -0.143 4.143 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.207 0.793 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.074 0.926 52 H 0.085 0.915 53 H 0.075 0.925 54 H 0.050 0.950 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.296 -8.244 -29.176 30.777 hybrid contribution 0.075 0.328 1.766 1.798 sum -5.222 -7.917 -27.409 29.003 Atomic orbital electron populations 1.23160 0.79233 1.03958 1.01312 1.88004 1.21339 1.25878 1.94668 1.22180 0.95016 0.87389 0.93364 0.87166 1.21444 0.82695 0.82600 0.84278 1.90677 1.60606 1.36844 1.57322 1.48191 1.46387 1.07174 1.32071 1.22202 1.01931 0.83507 0.94389 1.21925 0.97902 1.00455 0.96372 1.21455 1.00078 0.95483 0.97437 1.21472 0.98191 0.96687 0.94861 0.93144 1.20715 0.94993 0.92315 0.88831 1.42508 1.16509 1.56791 1.22618 1.19597 0.97437 1.22449 0.98518 0.90854 1.25570 0.97827 1.01086 1.02193 1.69806 1.15913 1.38858 1.37348 0.85198 0.77694 0.77618 0.79170 1.20145 1.21949 1.20693 1.21383 0.92572 0.98980 0.86574 1.21627 0.97289 1.00111 0.91908 1.21606 0.96855 1.02677 0.93659 1.21512 0.98462 0.98729 0.96540 1.21539 0.96829 0.99244 0.98013 1.21521 0.97958 1.01801 0.94085 1.21369 0.97297 0.98673 0.96972 0.88813 0.93825 0.91228 0.88791 0.87069 0.87856 0.92372 0.93409 0.91003 0.97187 0.95284 0.79260 0.93926 0.89803 0.91534 0.88275 0.91868 0.89918 0.91074 0.90705 0.91196 0.92576 0.91507 0.92494 0.94994 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.48 113.37 1.19 1.47 16 2 O -0.38 -8.75 8.61 -130.31 -1.12 -9.88 16 3 C 0.08 1.58 1.47 29.85 0.04 1.63 16 4 H 0.11 1.54 6.57 -2.39 -0.02 1.53 16 5 C 0.50 13.97 6.04 87.66 0.53 14.50 16 6 O -0.58 -22.04 15.98 15.63 0.25 -21.79 16 7 N -0.60 -14.68 2.97 -818.90 -2.43 -17.12 16 8 C 0.10 1.58 5.24 86.36 0.45 2.03 16 9 C -0.13 -2.47 6.08 30.67 0.19 -2.29 16 10 C -0.11 -3.02 5.06 30.62 0.15 -2.86 16 11 C -0.09 -3.06 2.37 -10.72 -0.03 -3.09 16 12 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 13 C 0.16 6.57 5.65 86.38 0.49 7.06 16 14 N -0.74 -38.59 5.32 -343.45 -1.83 -40.42 16 15 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 16 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 18 N -0.97 -59.74 13.06 21.65 0.28 -59.45 16 19 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 C 0.13 3.74 5.71 86.36 0.49 4.23 16 24 C -0.09 -1.32 1.61 -10.79 -0.02 -1.33 16 25 C -0.11 -1.08 4.71 30.59 0.14 -0.94 16 26 C -0.12 -0.96 5.92 30.59 0.18 -0.78 16 27 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 28 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 29 C -0.11 -2.03 4.82 30.59 0.15 -1.88 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.07 0.66 7.04 -2.39 -0.02 0.65 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.10 4.81 -2.39 -0.01 1.09 16 35 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.67 7.16 -2.39 -0.02 1.65 16 38 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.37 20.56 6.85 -92.71 -0.64 19.93 16 42 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.29 7.03 -2.39 -0.02 2.27 16 45 H 0.10 1.17 6.17 -2.38 -0.01 1.16 16 46 H 0.06 0.73 6.90 -2.38 -0.02 0.72 16 47 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 48 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 49 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 52 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.03 0.79 7.39 -2.39 -0.02 0.78 16 55 H 0.06 1.26 7.55 -2.39 -0.02 1.24 16 Total: -1.00 -75.84 411.29 3.03 -72.81 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.22 Total: 29.15 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.63 Total: -2.08 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.98 Total: -116.99 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.87 Total: -31.66 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.84 3.03 -72.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265637323.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.499 kcal (2) G-P(sol) polarization free energy of solvation -75.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds