Wall clock time and date at job start Tue Mar 31 2020 22:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99905 * 2 1 4 4 H 1.08996 * 109.47229 * 30.00287 * 3 2 1 5 5 C 1.50698 * 109.46935 * 269.99590 * 3 2 1 6 6 O 1.21280 * 120.00147 * 353.30438 * 5 3 2 7 7 N 1.34776 * 119.99704 * 173.30597 * 5 3 2 8 8 C 1.46929 * 120.63036 * 175.42950 * 7 5 3 9 9 C 1.53192 * 108.77585 * 126.41014 * 8 7 5 10 10 C 1.53043 * 109.33896 * 54.62306 * 9 8 7 11 11 C 1.53044 * 109.53840 * 298.68468 * 10 9 8 12 12 H 1.09001 * 109.49445 * 301.34710 * 11 10 9 13 13 C 1.52992 * 109.49613 * 181.28491 * 11 10 9 14 14 N 1.46496 * 109.47521 * 65.06541 * 13 11 10 15 15 C 1.36934 * 120.00049 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99982 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00004 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99996 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47344 * 90.00205 * 19 17 15 21 21 H 1.48505 * 109.47058 * 210.00778 * 19 17 15 22 22 H 1.48503 * 109.47121 * 330.00059 * 19 17 15 23 23 C 1.46926 * 120.63224 * 355.45167 * 7 5 3 24 24 C 1.53007 * 109.47071 * 149.99770 * 3 2 1 25 25 C 1.52998 * 109.46850 * 57.78925 * 24 3 2 26 26 C 1.53004 * 109.47361 * 179.97438 * 25 24 3 27 27 C 1.53002 * 109.46694 * 59.99871 * 26 25 24 28 28 C 1.52998 * 109.47322 * 300.00152 * 27 26 25 29 29 C 1.52992 * 109.47082 * 297.79304 * 24 3 2 30 30 H 1.09000 * 109.46635 * 60.00043 * 1 2 3 31 31 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47049 * 300.00506 * 1 2 3 33 33 H 1.08997 * 109.58974 * 246.20327 * 8 7 5 34 34 H 1.09006 * 109.58356 * 6.62679 * 8 7 5 35 35 H 1.09002 * 109.49580 * 174.58544 * 9 8 7 36 36 H 1.08998 * 109.50238 * 294.65737 * 9 8 7 37 37 H 1.08989 * 109.48727 * 178.64289 * 10 9 8 38 38 H 1.09000 * 109.43049 * 58.68339 * 10 9 8 39 39 H 1.09008 * 109.46855 * 185.06384 * 13 11 10 40 40 H 1.09003 * 109.46893 * 305.05783 * 13 11 10 41 41 H 0.97000 * 119.99920 * 359.97438 * 14 13 11 42 42 H 0.97003 * 120.00105 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.58542 * 113.80471 * 23 7 5 44 44 H 1.08992 * 109.58750 * 353.37688 * 23 7 5 45 45 H 1.08998 * 109.47077 * 177.78435 * 24 3 2 46 46 H 1.09002 * 109.47467 * 300.00036 * 25 24 3 47 47 H 1.09004 * 109.47329 * 59.99786 * 25 24 3 48 48 H 1.09002 * 109.46955 * 300.00466 * 26 25 24 49 49 H 1.08991 * 109.47607 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.47229 * 180.02562 * 27 26 25 51 51 H 1.09002 * 109.46933 * 60.00582 * 27 26 25 52 52 H 1.08994 * 109.47174 * 300.00089 * 28 27 26 53 53 H 1.09004 * 109.47138 * 179.97438 * 28 27 26 54 54 H 1.09004 * 109.47003 * 299.99439 * 29 24 3 55 55 H 1.08998 * 109.47874 * 59.99619 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 2.0087 1.0006 -2.3402 7 7 2.6262 3.0233 -1.6697 8 6 2.9259 3.4554 -3.0417 9 6 2.1185 4.7209 -3.3475 10 6 2.4077 5.7773 -2.2786 11 6 1.9785 5.2491 -0.9077 12 1 0.9160 5.0066 -0.9277 13 6 2.2384 6.3181 0.1555 14 7 1.3795 7.4776 -0.0975 15 6 1.4380 8.5666 0.7305 16 1 2.1170 8.5706 1.5704 17 6 0.6238 9.6651 0.4911 18 7 0.6796 10.7117 1.2873 19 14 -0.5512 9.6579 -0.9611 20 1 -1.8582 9.0943 -0.5376 21 1 -0.7455 11.0476 -1.4474 22 1 0.0162 8.8263 -2.0528 23 6 2.7842 3.9896 -0.5743 24 6 3.3589 1.2633 0.7213 25 6 4.2739 0.2485 0.0329 26 6 5.6228 0.2067 0.7538 27 6 5.4093 -0.2057 2.2116 28 6 4.4944 0.8091 2.9000 29 6 3.1450 0.8505 2.1789 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9906 3.6703 -3.1328 34 1 2.6489 2.6672 -3.7418 35 1 2.4034 5.1065 -4.3264 36 1 1.0548 4.4831 -3.3456 37 1 1.8529 6.6871 -2.5071 38 1 3.4752 5.9968 -2.2651 39 1 2.0173 5.9105 1.1421 40 1 3.2837 6.6243 0.1149 41 1 0.7699 7.4742 -0.8520 42 1 0.1109 11.4795 1.1198 43 1 3.8374 4.2482 -0.4642 44 1 2.4139 3.5539 0.3536 45 1 3.8203 2.2502 0.6871 46 1 3.8125 -0.7385 0.0671 47 1 4.4262 0.5425 -1.0056 48 1 6.0840 1.1937 0.7192 49 1 6.2745 -0.5166 0.2637 50 1 6.3702 -0.2351 2.7254 51 1 4.9482 -1.1928 2.2462 52 1 4.9556 1.7960 2.8655 53 1 4.3420 0.5150 3.9385 54 1 2.4932 1.5735 2.6694 55 1 2.6836 -0.1364 2.2132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265637327.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:35 Heat of formation + Delta-G solvation = -112.536964 kcal Electronic energy + Delta-G solvation = -31868.080946 eV Core-core repulsion = 27903.383292 eV Total energy + Delta-G solvation = -3964.697655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.85830 -39.80225 -38.83076 -37.90603 -36.60400 -34.41558 -33.81625 -32.54132 -31.96482 -31.60867 -28.46917 -27.51708 -27.16577 -25.95668 -24.23302 -23.56934 -23.16132 -22.48613 -21.37529 -20.63479 -20.09373 -19.64570 -18.35853 -17.75342 -17.18480 -16.72978 -16.53813 -15.98236 -15.92369 -15.77200 -15.53266 -15.50684 -15.11282 -15.00470 -14.86130 -14.72215 -14.46882 -14.17798 -13.96598 -13.90966 -13.72661 -13.53889 -13.17027 -13.01093 -12.88385 -12.85329 -12.73356 -12.32466 -12.25586 -12.06187 -12.01139 -11.94904 -11.86639 -11.76588 -11.68149 -11.48287 -11.40749 -11.27120 -11.10330 -10.94777 -10.90007 -10.22870 -9.70069 -9.26205 -8.01437 -5.33834 1.37267 1.39851 1.47080 1.47929 1.84007 2.48513 2.74676 3.30070 3.30620 3.54907 3.61046 3.67240 3.80272 3.85348 3.91701 3.97561 4.08821 4.18254 4.29437 4.31393 4.37029 4.39937 4.41556 4.47848 4.49644 4.50602 4.57715 4.62991 4.67990 4.69669 4.75064 4.76782 4.79617 4.82733 4.89389 4.96150 5.03964 5.12443 5.18666 5.19232 5.27352 5.30167 5.31912 5.34103 5.40302 5.43661 5.44916 5.49348 5.64041 5.78586 5.98277 6.22662 6.32723 7.07972 7.10051 7.87232 8.04240 9.20129 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003113 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.872557 B = 8993.193389 C = 9774.394695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.368 6.368 3 C 0.077 3.923 4 H 0.100 0.900 5 C 0.494 3.506 6 O -0.572 6.572 7 N -0.603 5.603 8 C 0.111 3.889 9 C -0.125 4.125 10 C -0.112 4.112 11 C -0.102 4.102 12 H 0.066 0.934 13 C 0.161 3.839 14 N -0.757 5.757 15 C -0.229 4.229 16 H 0.061 0.939 17 C -0.064 4.064 18 N -0.984 5.984 19 Si 0.949 3.051 20 H -0.281 1.281 21 H -0.298 1.298 22 H -0.251 1.251 23 C 0.116 3.884 24 C -0.077 4.077 25 C -0.104 4.104 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.109 4.109 30 H 0.027 0.973 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.364 0.636 42 H 0.257 0.743 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.057 0.943 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.067 0.933 53 H 0.071 0.929 54 H 0.071 0.929 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 -24.268 -2.395 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.286 6.286 3 C 0.015 3.985 4 H 0.118 0.882 5 C 0.283 3.717 6 O -0.451 6.451 7 N -0.337 5.337 8 C -0.011 4.011 9 C -0.163 4.163 10 C -0.150 4.150 11 C -0.122 4.122 12 H 0.084 0.916 13 C 0.035 3.965 14 N -0.403 5.403 15 C -0.360 4.360 16 H 0.079 0.921 17 C -0.255 4.255 18 N -0.635 5.635 19 Si 0.777 3.223 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.176 1.176 23 C -0.007 4.007 24 C -0.096 4.096 25 C -0.141 4.141 26 C -0.153 4.153 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.146 4.146 30 H 0.046 0.954 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.198 0.802 42 H 0.066 0.934 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.086 0.914 53 H 0.089 0.911 54 H 0.090 0.910 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.490 -24.771 -2.704 26.019 hybrid contribution -1.303 0.933 -0.941 1.859 sum 6.187 -23.837 -3.645 24.896 Atomic orbital electron populations 1.22991 0.79925 1.04091 1.00173 1.87951 1.20863 1.25444 1.94305 1.22274 0.98362 0.86737 0.91095 0.88246 1.21751 0.75817 0.81369 0.92748 1.90657 1.52256 1.54666 1.47529 1.48202 1.66035 1.10534 1.08918 1.21652 1.00170 0.96553 0.82711 1.21856 0.99968 0.94765 0.99736 1.21526 1.02151 0.97704 0.93578 1.21607 1.00284 0.94654 0.95632 0.91579 1.20747 0.93743 0.85859 0.96167 1.42722 1.48269 1.16315 1.33020 1.19053 1.17420 0.93458 1.06038 0.92096 1.25452 1.02189 0.96141 1.01715 1.69875 1.44436 1.07461 1.41731 0.85494 0.79493 0.76743 0.80557 1.20732 1.22483 1.17599 1.21927 1.01645 0.87771 0.89369 1.21405 0.91205 1.01240 0.95707 1.21394 0.95838 0.99223 0.97681 1.21521 0.95979 1.01889 0.95943 1.21531 0.99938 0.98986 0.95088 1.21542 0.94897 0.99880 0.99221 1.21528 0.98152 1.02230 0.92712 0.95380 0.87987 0.92017 0.89657 0.90482 0.89168 0.92858 0.93051 0.90663 0.94773 0.94836 0.80250 0.93431 0.88726 0.88118 0.88202 0.92451 0.94238 0.91514 0.91940 0.91192 0.92389 0.91398 0.91067 0.90983 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.81 113.37 1.23 1.67 16 2 O -0.37 -8.39 8.54 -130.03 -1.11 -9.50 16 3 C 0.08 1.56 1.39 29.85 0.04 1.60 16 4 H 0.10 1.72 6.77 -2.39 -0.02 1.71 16 5 C 0.49 12.44 5.87 87.66 0.51 12.96 16 6 O -0.57 -18.86 15.93 15.92 0.25 -18.61 16 7 N -0.60 -13.01 2.97 -818.91 -2.43 -15.45 16 8 C 0.11 2.31 6.44 86.36 0.56 2.86 16 9 C -0.13 -2.62 6.08 30.67 0.19 -2.43 16 10 C -0.11 -2.72 5.06 30.62 0.15 -2.57 16 11 C -0.10 -2.54 2.37 -10.72 -0.03 -2.56 16 12 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 13 C 0.16 5.26 5.65 86.38 0.49 5.75 16 14 N -0.76 -33.04 5.12 -343.46 -1.76 -34.80 16 15 C -0.23 -12.53 10.47 84.03 0.88 -11.65 16 16 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 17 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 18 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 19 Si 0.95 44.56 27.74 68.60 1.90 46.46 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.25 -10.56 6.52 99.48 0.65 -9.92 16 23 C 0.12 2.19 4.23 86.36 0.36 2.55 16 24 C -0.08 -1.29 1.70 -10.79 -0.02 -1.30 16 25 C -0.10 -1.96 4.82 30.59 0.15 -1.82 16 26 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 27 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 28 C -0.12 -1.49 5.93 30.61 0.18 -1.30 16 29 C -0.11 -1.56 5.08 30.61 0.16 -1.41 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.83 7.00 -2.38 -0.02 1.81 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.49 7.16 -2.39 -0.02 1.48 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.36 15.41 4.71 -92.71 -0.44 14.97 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.10 1.62 5.02 -2.39 -0.01 1.61 16 45 H 0.10 1.47 5.96 -2.39 -0.01 1.46 16 46 H 0.06 1.26 7.63 -2.39 -0.02 1.25 16 47 H 0.04 0.89 7.29 -2.38 -0.02 0.87 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 55 H 0.06 1.05 7.74 -2.39 -0.02 1.03 16 Total: -1.00 -71.63 410.38 3.19 -68.45 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.35 Total: 28.96 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.68 Total: -3.74 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -3.89 Total: -112.02 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.86 Total: -28.11 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -71.63 3.19 -68.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265637327.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.091 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds