Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00028 * 2 1 4 4 C 1.53005 * 109.46806 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47200 * 299.99978 * 4 3 2 6 6 O 1.21278 * 120.00014 * 239.99934 * 5 4 3 7 7 N 1.34770 * 119.99702 * 60.00656 * 5 4 3 8 8 C 1.46495 * 119.99992 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47406 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.69872 * 299.95341 * 9 8 7 11 11 C 1.52763 * 109.50898 * 179.84090 * 9 8 7 12 12 C 1.53048 * 109.37971 * 185.70577 * 11 9 8 13 13 C 1.53041 * 109.53645 * 61.24189 * 12 11 9 14 14 C 1.53190 * 109.31134 * 298.63225 * 13 12 11 15 15 N 1.46920 * 109.58791 * 60.31366 * 9 8 7 16 16 C 1.36945 * 120.62833 * 353.41586 * 15 9 8 17 17 H 1.07998 * 120.00069 * 29.54393 * 16 15 9 18 18 C 1.38810 * 120.00138 * 209.53731 * 16 15 9 19 19 N 1.31617 * 120.00108 * 198.36409 * 18 16 15 20 20 Si 1.86806 * 119.99915 * 18.36727 * 18 16 15 21 21 H 1.48499 * 109.47269 * 265.15599 * 20 18 16 22 22 H 1.48501 * 109.47141 * 25.15654 * 20 18 16 23 23 H 1.48501 * 109.46996 * 145.15277 * 20 18 16 24 24 C 1.52996 * 109.47054 * 60.00662 * 4 3 2 25 25 C 1.52996 * 109.47079 * 179.97438 * 24 4 3 26 26 C 1.53001 * 109.47250 * 299.99709 * 25 24 4 27 27 C 1.53008 * 109.47224 * 59.99831 * 26 25 24 28 28 C 1.53000 * 109.46735 * 300.00563 * 27 26 25 29 29 H 1.09000 * 109.46993 * 59.99775 * 1 2 3 30 30 H 1.08998 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47262 * 299.99666 * 1 2 3 32 32 H 1.09003 * 109.46753 * 60.00281 * 3 2 1 33 33 H 1.08997 * 109.47424 * 299.99938 * 3 2 1 34 34 H 0.97003 * 120.00239 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.47293 * 59.99759 * 8 7 5 36 36 H 1.09007 * 109.46957 * 299.99803 * 8 7 5 37 37 H 1.08993 * 109.56556 * 65.67235 * 11 9 8 38 38 H 1.09004 * 109.36216 * 305.61281 * 11 9 8 39 39 H 1.08992 * 109.45833 * 301.21773 * 12 11 9 40 40 H 1.09007 * 109.44153 * 181.25032 * 12 11 9 41 41 H 1.09000 * 109.49695 * 178.68332 * 13 12 11 42 42 H 1.08996 * 109.50315 * 58.58176 * 13 12 11 43 43 H 1.09011 * 109.58405 * 294.85202 * 14 13 12 44 44 H 1.09002 * 109.70260 * 174.50095 * 14 13 12 45 45 H 0.96997 * 119.99746 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.47063 * 299.99666 * 24 4 3 47 47 H 1.08997 * 109.47555 * 59.99779 * 24 4 3 48 48 H 1.08993 * 109.47341 * 179.97438 * 25 24 4 49 49 H 1.09004 * 109.47328 * 59.99688 * 25 24 4 50 50 H 1.09004 * 109.46938 * 300.00218 * 26 25 24 51 51 H 1.08998 * 109.47632 * 180.02562 * 26 25 24 52 52 H 1.08997 * 109.46975 * 180.02562 * 27 26 25 53 53 H 1.09004 * 109.46847 * 60.00331 * 27 26 25 54 54 H 1.08999 * 109.47412 * 299.99051 * 28 27 26 55 55 H 1.09003 * 109.46810 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9797 0.4369 1.2315 6 8 4.7210 0.9695 2.0300 7 7 3.5531 -0.8236 1.4447 8 6 3.9853 -1.5507 2.6408 9 6 3.3624 -2.9482 2.6411 10 1 2.2756 -2.8660 2.6421 11 6 3.8157 -3.7085 3.8861 12 6 3.3083 -5.1505 3.8134 13 6 3.9004 -5.8399 2.5820 14 6 3.4433 -5.1023 1.3196 15 7 3.7998 -3.6826 1.4462 16 6 4.5308 -3.0573 0.4715 17 1 5.1844 -2.2371 0.7293 18 6 4.4318 -3.4777 -0.8477 19 7 5.3655 -3.1488 -1.7150 20 14 2.9732 -4.5101 -1.3920 21 1 3.3342 -5.9491 -1.3287 22 1 1.8195 -4.2492 -0.4941 23 1 2.6063 -4.1525 -2.7858 24 6 3.9874 0.4252 -1.2483 25 6 5.5126 0.3049 -1.2480 26 6 6.1345 1.7028 -1.2482 27 6 5.6826 2.4623 0.0008 28 6 4.1573 2.5825 0.0004 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 2.9600 -1.2495 0.8061 35 1 3.6637 -1.0098 3.5308 36 1 5.0719 -1.6368 2.6408 37 1 3.4123 -3.2253 4.7759 38 1 4.9048 -3.7080 3.9333 39 1 2.2207 -5.1495 3.7413 40 1 3.6123 -5.6879 4.7118 41 1 3.5572 -6.8738 2.5437 42 1 4.9885 -5.8193 2.6414 43 1 2.3630 -5.1994 1.2106 44 1 3.9382 -5.5270 0.4463 45 1 5.2964 -3.4429 -2.6368 46 1 3.5440 -0.5706 -1.2484 47 1 3.6662 0.9660 -2.1385 48 1 5.8346 -0.2365 -2.1375 49 1 5.8343 -0.2358 -0.3578 50 1 5.8129 2.2434 -2.1384 51 1 7.2212 1.6171 -1.2485 52 1 6.1253 3.4583 0.0003 53 1 6.0043 1.9217 0.8910 54 1 3.8357 3.1232 -0.8897 55 1 3.8353 3.1232 0.8904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265647884.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = -91.770156 kcal Electronic energy + Delta-G solvation = -33968.661381 eV Core-core repulsion = 30004.864243 eV Total energy + Delta-G solvation = -3963.797138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73131 -39.82894 -38.61397 -37.81769 -35.64630 -34.77409 -33.29118 -32.51303 -32.12634 -31.30768 -27.95145 -27.72884 -26.36625 -26.00035 -24.26954 -23.54506 -23.43046 -22.10382 -21.51439 -20.97028 -20.04358 -18.32163 -17.65105 -17.28426 -17.12965 -17.01790 -16.60461 -16.46579 -16.15195 -15.47768 -15.28724 -15.23940 -15.07801 -14.89281 -14.70333 -14.64480 -14.37844 -14.16883 -13.67196 -13.63398 -13.32806 -13.18609 -13.02580 -12.92053 -12.84502 -12.82029 -12.64352 -12.50797 -12.24518 -12.09836 -11.94249 -11.83627 -11.65234 -11.51308 -11.49659 -11.17402 -11.15492 -10.98150 -10.89964 -10.56040 -10.54082 -10.22971 -9.59616 -8.70285 -7.93444 -5.27765 1.35414 1.47173 1.53309 1.91192 2.53581 2.56468 2.85443 3.18119 3.42179 3.76950 3.78719 3.92129 3.98851 4.08180 4.15146 4.20952 4.26738 4.31130 4.34135 4.44447 4.47327 4.53635 4.54248 4.58074 4.59890 4.63736 4.65296 4.70743 4.71796 4.76907 4.86678 4.87483 4.89531 4.96556 5.00694 5.05874 5.10273 5.16399 5.22407 5.25327 5.30640 5.32338 5.34153 5.45519 5.53337 5.61769 5.62711 5.69572 5.92295 6.06592 6.27002 6.38339 6.98545 7.08165 7.61613 7.80028 8.19901 9.22608 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.005388 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.863545 B = 5195.706875 C = 5551.399085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.412 6.412 3 C 0.076 3.924 4 C -0.072 4.072 5 C 0.520 3.480 6 O -0.593 6.593 7 N -0.684 5.684 8 C 0.138 3.862 9 C 0.165 3.835 10 H 0.045 0.955 11 C -0.124 4.124 12 C -0.102 4.102 13 C -0.131 4.131 14 C 0.123 3.877 15 N -0.615 5.615 16 C -0.226 4.226 17 H 0.062 0.938 18 C -0.009 4.009 19 N -0.933 5.933 20 Si 0.923 3.077 21 H -0.296 1.296 22 H -0.259 1.259 23 H -0.321 1.321 24 C -0.085 4.085 25 C -0.096 4.096 26 C -0.113 4.113 27 C -0.127 4.127 28 C -0.082 4.082 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.029 0.971 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.021 0.979 50 H 0.078 0.922 51 H 0.050 0.950 52 H 0.076 0.924 53 H 0.057 0.943 54 H 0.095 0.905 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 7.383 5.198 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.332 6.332 3 C 0.000 4.000 4 C -0.075 4.075 5 C 0.308 3.692 6 O -0.476 6.476 7 N -0.335 5.335 8 C 0.013 3.987 9 C 0.060 3.940 10 H 0.062 0.938 11 C -0.163 4.163 12 C -0.139 4.139 13 C -0.170 4.170 14 C -0.002 4.002 15 N -0.340 5.340 16 C -0.356 4.356 17 H 0.080 0.920 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.755 3.245 21 H -0.224 1.224 22 H -0.184 1.184 23 H -0.251 1.251 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.150 4.150 27 C -0.164 4.164 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.063 0.937 49 H 0.040 0.960 50 H 0.097 0.903 51 H 0.069 0.931 52 H 0.095 0.905 53 H 0.075 0.925 54 H 0.113 0.887 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.435 7.552 5.618 13.328 hybrid contribution -0.498 -1.107 -1.117 1.650 sum -9.934 6.445 4.501 12.668 Atomic orbital electron populations 1.22862 0.79433 1.03184 1.01123 1.87842 1.21496 1.28285 1.95535 1.22566 0.90310 0.85018 1.02150 1.20966 0.95573 0.97489 0.93442 1.20648 0.79612 0.81956 0.87019 1.90514 1.38673 1.69432 1.48982 1.46099 1.49117 1.13339 1.24957 1.21188 0.97978 0.91831 0.87697 1.20791 0.96239 0.89519 0.87484 0.93769 1.21837 1.00690 0.96614 0.97206 1.21355 1.00305 0.94873 0.97385 1.21937 1.00345 0.99040 0.95647 1.21356 0.96972 0.84605 0.97259 1.44522 1.63408 1.05479 1.20620 1.18717 1.16200 1.14729 0.85939 0.91994 1.25581 0.98950 0.99929 0.96084 1.69933 1.33856 1.50246 1.03870 0.86289 0.84150 0.78257 0.75783 1.22431 1.18377 1.25128 1.21301 0.95593 0.99661 0.95736 1.21189 0.95615 0.96434 1.00169 1.21556 0.99449 0.95128 0.98861 1.21683 0.95867 1.00550 0.98299 1.21281 0.95314 0.92348 1.03028 0.92442 0.89976 0.92820 0.92081 0.89781 0.74533 0.91267 0.94963 0.89634 0.93197 0.91564 0.90285 0.90690 0.93306 0.95291 0.93993 0.93834 0.93178 0.90069 0.93703 0.95969 0.90346 0.93073 0.90491 0.92463 0.88693 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -12.45 7.53 -148.98 -1.12 -13.57 16 3 C 0.08 2.00 4.79 71.98 0.35 2.34 16 4 C -0.07 -2.32 0.52 -52.93 -0.03 -2.35 16 5 C 0.52 20.78 4.96 87.66 0.44 21.22 16 6 O -0.59 -26.31 13.66 -3.02 -0.04 -26.35 16 7 N -0.68 -27.97 3.35 -463.07 -1.55 -29.53 16 8 C 0.14 5.42 4.42 86.38 0.38 5.80 16 9 C 0.17 6.07 2.99 44.83 0.13 6.20 16 10 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 11 C -0.12 -3.72 5.35 30.53 0.16 -3.56 16 12 C -0.10 -2.73 5.89 30.62 0.18 -2.55 16 13 C -0.13 -4.25 6.08 30.67 0.19 -4.06 16 14 C 0.12 5.03 4.19 86.36 0.36 5.39 16 15 N -0.61 -27.13 2.74 -676.04 -1.85 -28.98 16 16 C -0.23 -11.82 7.49 84.03 0.63 -11.19 16 17 H 0.06 3.66 5.85 -2.91 -0.02 3.65 16 18 C -0.01 -0.52 5.25 84.86 0.45 -0.07 16 19 N -0.93 -54.76 13.97 21.65 0.30 -54.46 16 20 Si 0.92 45.17 24.36 68.60 1.67 46.84 16 21 H -0.30 -14.39 6.75 99.48 0.67 -13.72 16 22 H -0.26 -12.03 6.40 99.48 0.64 -11.39 16 23 H -0.32 -16.36 7.11 99.48 0.71 -15.65 16 24 C -0.09 -3.12 4.49 30.59 0.14 -2.98 16 25 C -0.10 -3.95 5.70 30.59 0.17 -3.77 16 26 C -0.11 -3.64 5.92 30.60 0.18 -3.46 16 27 C -0.13 -3.94 5.63 30.60 0.17 -3.77 16 28 C -0.08 -2.25 4.37 30.59 0.13 -2.11 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 17.81 4.78 -92.71 -0.44 17.37 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.03 1.47 7.42 -2.38 -0.02 1.45 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.03 1.16 6.90 -2.38 -0.02 1.14 16 44 H 0.04 1.95 4.70 -2.39 -0.01 1.94 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.05 2.22 7.11 -2.39 -0.02 2.20 16 47 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 49 H 0.02 1.09 7.10 -2.39 -0.02 1.07 16 50 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 53 H 0.06 2.24 5.51 -2.39 -0.01 2.23 16 54 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 55 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -66.35 395.41 2.99 -63.35 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: 0.30 Total: 39.72 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.28 Total: 2.97 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.10 Total: -112.96 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.16 Total: -39.92 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -66.35 2.99 -63.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265647884.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.417 kcal (2) G-P(sol) polarization free energy of solvation -66.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds