Wall clock time and date at job start Tue Mar 31 2020 22:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99973 * 2 1 4 4 C 1.53000 * 109.47016 * 184.97444 * 3 2 1 5 5 C 1.50705 * 109.46871 * 304.12305 * 4 3 2 6 6 O 1.21284 * 120.00010 * 247.71410 * 5 4 3 7 7 N 1.34771 * 119.99623 * 67.71941 * 5 4 3 8 8 C 1.46508 * 119.99939 * 184.60879 * 7 5 4 9 9 C 1.53006 * 109.46938 * 277.43103 * 8 7 5 10 10 H 1.09005 * 109.58499 * 58.29969 * 9 8 7 11 11 C 1.53187 * 109.58414 * 178.58115 * 9 8 7 12 12 C 1.53033 * 109.31300 * 174.42131 * 11 9 8 13 13 C 1.53044 * 109.53849 * 298.63501 * 12 11 9 14 14 C 1.53194 * 109.31169 * 61.36387 * 13 12 11 15 15 N 1.46922 * 109.58543 * 298.01644 * 9 8 7 16 16 C 1.36935 * 120.63290 * 6.60807 * 15 9 8 17 17 H 1.08007 * 119.99778 * 327.42823 * 16 15 9 18 18 C 1.38817 * 120.00196 * 147.42864 * 16 15 9 19 19 N 1.31620 * 119.99522 * 350.32775 * 18 16 15 20 20 Si 1.86789 * 120.00061 * 170.33096 * 18 16 15 21 21 H 1.48504 * 109.47497 * 95.00200 * 20 18 16 22 22 H 1.48504 * 109.47396 * 215.00057 * 20 18 16 23 23 H 1.48501 * 109.47475 * 334.99719 * 20 18 16 24 24 C 1.52996 * 109.47328 * 64.12451 * 4 3 2 25 25 C 1.53005 * 109.47051 * 180.02562 * 24 4 3 26 26 C 1.53001 * 109.47115 * 299.99927 * 25 24 4 27 27 C 1.53003 * 109.47352 * 59.99960 * 26 25 24 28 28 C 1.53001 * 109.47131 * 184.12558 * 4 3 2 29 29 H 1.09008 * 109.47168 * 184.97721 * 1 2 3 30 30 H 1.09001 * 109.47412 * 304.97574 * 1 2 3 31 31 H 1.09000 * 109.47232 * 64.98057 * 1 2 3 32 32 H 1.08998 * 109.47412 * 64.97242 * 3 2 1 33 33 H 1.09007 * 109.46939 * 304.97053 * 3 2 1 34 34 H 0.96999 * 120.00698 * 4.61470 * 7 5 4 35 35 H 1.08997 * 109.47217 * 157.42866 * 8 7 5 36 36 H 1.09000 * 109.46760 * 37.42827 * 8 7 5 37 37 H 1.09003 * 109.49924 * 294.37431 * 11 9 8 38 38 H 1.09002 * 109.49551 * 54.46744 * 11 9 8 39 39 H 1.08999 * 109.45944 * 58.65470 * 12 11 9 40 40 H 1.09008 * 109.46258 * 178.63172 * 12 11 9 41 41 H 1.09005 * 109.49421 * 181.31260 * 13 12 11 42 42 H 1.09000 * 109.49771 * 301.40965 * 13 12 11 43 43 H 1.09005 * 109.58258 * 65.15049 * 14 13 12 44 44 H 1.09001 * 109.58738 * 185.43474 * 14 13 12 45 45 H 0.97003 * 119.99603 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.47162 * 300.00134 * 24 4 3 47 47 H 1.08999 * 109.47229 * 60.00164 * 24 4 3 48 48 H 1.08997 * 109.46934 * 180.02562 * 25 24 4 49 49 H 1.08999 * 109.47125 * 59.99910 * 25 24 4 50 50 H 1.09012 * 109.47278 * 300.00256 * 26 25 24 51 51 H 1.08994 * 109.47461 * 180.02562 * 26 25 24 52 52 H 1.08996 * 109.47413 * 179.97438 * 27 26 25 53 53 H 1.09003 * 109.46551 * 59.99734 * 27 26 25 54 54 H 1.08999 * 109.47111 * 299.99642 * 28 4 3 55 55 H 1.09003 * 109.47144 * 59.99883 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5304 1.1868 -0.1251 5 6 4.0588 0.3122 0.9826 6 8 4.7495 0.7916 1.8567 7 7 3.7639 -1.0027 1.0018 8 6 4.1919 -1.8331 2.1304 9 6 5.6477 -2.2583 1.9275 10 1 6.2776 -1.3733 1.8373 11 6 6.1090 -3.0973 3.1233 12 6 7.5157 -3.6350 2.8517 13 6 7.4901 -4.5330 1.6127 14 6 7.0444 -3.7102 0.3998 15 7 5.7586 -3.0683 0.7068 16 6 4.6834 -3.2250 -0.1266 17 1 3.6831 -3.2438 0.2801 18 6 4.8792 -3.3597 -1.4943 19 7 6.0705 -3.1480 -2.0125 20 14 3.4522 -3.8414 -2.5991 21 1 2.8309 -2.6180 -3.1671 22 1 3.9490 -4.7022 -3.7026 23 1 2.4420 -4.5871 -1.8062 24 6 3.8840 0.5658 -1.4779 25 6 5.4043 0.4466 -1.6027 26 6 6.0350 1.8367 -1.4992 27 6 5.6815 2.4578 -0.1463 28 6 4.1607 2.5771 -0.0218 29 1 -0.3634 -1.0239 0.0892 30 1 -0.3634 0.5891 0.8421 31 1 -0.3634 0.4346 -0.9312 32 1 1.7608 1.8142 0.9311 33 1 1.6198 1.8769 -0.8422 34 1 3.2684 -1.3994 0.2684 35 1 3.5596 -2.7189 2.1902 36 1 4.1057 -1.2620 3.0548 37 1 6.1234 -2.4767 4.0193 38 1 5.4225 -3.9313 3.2689 39 1 8.1967 -2.8010 2.6817 40 1 7.8561 -4.2124 3.7114 41 1 8.4876 -4.9342 1.4335 42 1 6.7907 -5.3536 1.7726 43 1 7.7899 -2.9450 0.1835 44 1 6.9314 -4.3649 -0.4644 45 1 6.2072 -3.2417 -2.9683 46 1 3.4350 -0.4246 -1.5515 47 1 3.5018 1.1984 -2.2791 48 1 5.6561 0.0046 -2.5666 49 1 5.7861 -0.1862 -0.8015 50 1 5.6532 2.4696 -2.3004 51 1 7.1180 1.7520 -1.5885 52 1 6.1312 3.4479 -0.0724 53 1 6.0633 1.8249 0.6549 54 1 3.7785 3.2097 -0.8230 55 1 3.9088 3.0196 0.9420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265647885.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:37 Heat of formation + Delta-G solvation = -96.105184 kcal Electronic energy + Delta-G solvation = -34141.554377 eV Core-core repulsion = 30177.569258 eV Total energy + Delta-G solvation = -3963.985119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72143 -39.55065 -38.53223 -37.80761 -35.55615 -34.77268 -33.27421 -32.17668 -31.58305 -31.29303 -27.96078 -27.61672 -26.56947 -25.99431 -23.79078 -23.55795 -23.45446 -22.12992 -21.42361 -20.78378 -20.13766 -18.27534 -17.75675 -17.30769 -17.02882 -16.70780 -16.38251 -16.34722 -15.84513 -15.53217 -15.47813 -15.09961 -14.98120 -14.84382 -14.52208 -14.47172 -14.29702 -14.03088 -13.65990 -13.43662 -13.18069 -13.05336 -12.91346 -12.85446 -12.77102 -12.65624 -12.51862 -12.43213 -12.25737 -12.11483 -11.96862 -11.88760 -11.76430 -11.54699 -11.53322 -11.23386 -11.05248 -11.02161 -10.95274 -10.55647 -10.39949 -10.26348 -9.48378 -8.39523 -7.68072 -5.17247 1.48613 1.52840 1.57598 1.96965 2.57597 2.64548 2.83721 3.48549 3.68162 3.72324 3.78526 3.90033 4.11041 4.15608 4.22903 4.25139 4.29084 4.30742 4.40915 4.45333 4.52207 4.58713 4.59579 4.62453 4.66174 4.67056 4.71691 4.73472 4.79841 4.83780 4.87205 4.92105 4.95421 4.98785 5.06312 5.14745 5.15731 5.20875 5.27844 5.30471 5.40716 5.42977 5.46684 5.49332 5.52014 5.63995 5.68456 5.78624 5.85410 5.97684 6.27229 6.54947 7.00625 7.30938 7.64610 8.00027 8.59439 9.36981 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.006042 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.681256 B = 4633.353578 C = 5289.414388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.078 3.922 4 C -0.073 4.073 5 C 0.526 3.474 6 O -0.593 6.593 7 N -0.683 5.683 8 C 0.133 3.867 9 C 0.160 3.840 10 H -0.008 1.008 11 C -0.122 4.122 12 C -0.103 4.103 13 C -0.132 4.132 14 C 0.183 3.817 15 N -0.591 5.591 16 C -0.232 4.232 17 H 0.066 0.934 18 C -0.025 4.025 19 N -0.920 5.920 20 Si 0.931 3.069 21 H -0.280 1.280 22 H -0.306 1.306 23 H -0.271 1.271 24 C -0.090 4.090 25 C -0.103 4.103 26 C -0.111 4.111 27 C -0.122 4.122 28 C -0.082 4.082 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.054 0.946 43 H -0.021 1.021 44 H 0.055 0.945 45 H 0.242 0.758 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.032 0.968 50 H 0.080 0.920 51 H 0.045 0.955 52 H 0.076 0.924 53 H 0.046 0.954 54 H 0.096 0.904 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 8.577 3.969 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C 0.001 3.999 4 C -0.076 4.076 5 C 0.313 3.687 6 O -0.475 6.475 7 N -0.332 5.332 8 C 0.008 3.992 9 C 0.053 3.947 10 H 0.010 0.990 11 C -0.161 4.161 12 C -0.141 4.141 13 C -0.171 4.171 14 C 0.057 3.943 15 N -0.314 5.314 16 C -0.363 4.363 17 H 0.083 0.917 18 C -0.222 4.222 19 N -0.566 5.566 20 Si 0.761 3.239 21 H -0.207 1.207 22 H -0.233 1.233 23 H -0.196 1.196 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.159 4.159 28 C -0.120 4.120 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.073 0.927 43 H -0.003 1.003 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.099 0.901 51 H 0.064 0.936 52 H 0.095 0.905 53 H 0.065 0.935 54 H 0.115 0.885 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.050 8.704 4.423 12.654 hybrid contribution -0.433 -0.669 -1.338 1.557 sum -8.483 8.035 3.085 12.085 Atomic orbital electron populations 1.22883 0.79419 1.03451 1.00981 1.87876 1.21479 1.28064 1.95579 1.22526 0.90157 0.85232 1.01964 1.20963 0.95520 0.96812 0.94276 1.20551 0.79067 0.82990 0.86046 1.90545 1.40371 1.75155 1.41469 1.45972 1.55617 1.07675 1.23965 1.21274 0.94806 0.94121 0.89014 1.20877 0.94841 0.91237 0.87755 0.99042 1.21891 0.97186 0.99666 0.97393 1.21337 0.96508 0.98512 0.97723 1.22033 1.00026 0.98404 0.96643 1.20491 0.85773 0.93157 0.94856 1.44108 1.09217 1.54762 1.23352 1.19099 0.87433 1.42769 0.86978 0.91663 1.25532 0.97399 1.01494 0.97752 1.70136 1.22289 1.53764 1.10417 0.85809 0.80778 0.77885 0.79429 1.20670 1.23301 1.19626 1.21410 0.95729 1.00551 0.95125 1.21251 0.95680 0.96758 1.00353 1.21525 0.99440 0.95743 0.98167 1.21594 0.96382 1.00955 0.96998 1.21286 0.94980 0.92800 1.02931 0.89404 0.92912 0.92786 0.92230 0.89758 0.75180 0.90132 0.91352 0.91411 0.91620 0.94184 0.90678 0.92189 0.92685 1.00322 0.92612 0.94865 0.93073 0.89546 0.94153 0.94942 0.90098 0.93571 0.90499 0.93484 0.88516 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -11.40 8.11 -148.98 -1.21 -12.61 16 3 C 0.08 1.93 4.80 71.98 0.35 2.28 16 4 C -0.07 -2.26 0.52 -52.93 -0.03 -2.28 16 5 C 0.53 20.53 4.69 87.66 0.41 20.94 16 6 O -0.59 -26.16 13.43 -3.04 -0.04 -26.20 16 7 N -0.68 -27.22 3.63 -463.03 -1.68 -28.90 16 8 C 0.13 5.18 4.69 86.38 0.40 5.58 16 9 C 0.16 6.91 3.09 44.98 0.14 7.05 16 10 H -0.01 -0.42 7.85 -2.38 -0.02 -0.43 16 11 C -0.12 -4.33 5.37 30.67 0.16 -4.17 16 12 C -0.10 -3.58 5.88 30.62 0.18 -3.40 16 13 C -0.13 -5.12 6.08 30.67 0.19 -4.93 16 14 C 0.18 8.97 5.23 86.36 0.45 9.42 16 15 N -0.59 -28.53 2.99 -675.12 -2.02 -30.54 16 16 C -0.23 -11.58 7.11 84.04 0.60 -10.98 16 17 H 0.07 3.16 5.42 -2.91 -0.02 3.15 16 18 C -0.03 -1.31 5.06 84.86 0.43 -0.88 16 19 N -0.92 -51.50 11.10 21.65 0.24 -51.26 16 20 Si 0.93 42.35 29.56 68.60 2.03 44.37 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 C -0.09 -3.09 4.46 30.59 0.14 -2.95 16 25 C -0.10 -4.08 5.70 30.60 0.17 -3.91 16 26 C -0.11 -3.60 5.92 30.60 0.18 -3.42 16 27 C -0.12 -3.82 5.63 30.61 0.17 -3.65 16 28 C -0.08 -2.22 4.36 30.61 0.13 -2.09 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.41 16.89 4.47 -92.71 -0.41 16.48 16 35 H 0.08 2.97 7.30 -2.39 -0.02 2.95 16 36 H 0.07 2.55 7.73 -2.39 -0.02 2.53 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 44 H 0.06 3.04 6.19 -2.39 -0.01 3.02 16 45 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 46 H 0.05 2.02 6.75 -2.39 -0.02 2.01 16 47 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.03 1.61 7.22 -2.39 -0.02 1.59 16 50 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 51 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.05 1.88 5.80 -2.39 -0.01 1.87 16 54 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 55 H 0.07 1.84 8.02 -2.39 -0.02 1.82 16 Total: -1.00 -63.89 401.36 3.09 -60.80 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: 0.43 Total: 39.92 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.33 Total: 4.40 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.46 Total: -110.70 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -1.25 Total: -38.80 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -63.89 3.09 -60.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265647885.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.305 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds