Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99934 * 2 1 4 4 C 1.53002 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47044 * 184.47314 * 4 3 2 6 6 C 1.50700 * 110.05729 * 295.67586 * 5 4 3 7 7 O 1.21277 * 120.00236 * 126.32559 * 6 5 4 8 8 N 1.34777 * 119.99792 * 306.33228 * 6 5 4 9 9 C 1.46500 * 119.99744 * 174.60414 * 8 6 5 10 10 C 1.52996 * 109.47305 * 274.99724 * 9 8 6 11 11 C 1.52995 * 109.47496 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47192 * 59.99606 * 11 10 9 13 13 N 1.46503 * 109.47321 * 180.02562 * 12 11 10 14 14 C 1.36943 * 119.99998 * 275.00603 * 13 12 11 15 15 H 1.07996 * 119.99651 * 359.97438 * 14 13 12 16 16 C 1.38804 * 119.99969 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00512 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00081 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46792 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47197 * 119.99608 * 18 16 14 21 21 H 1.48502 * 109.46900 * 240.00112 * 18 16 14 22 22 C 1.52994 * 109.47272 * 300.00175 * 12 11 10 23 23 C 1.53002 * 109.46946 * 154.99597 * 9 8 6 24 24 C 1.54270 * 110.03394 * 57.08897 * 5 4 3 25 25 C 1.54887 * 104.19467 * 142.89376 * 24 5 4 26 26 C 1.54889 * 102.75083 * 322.06061 * 25 24 5 27 27 C 1.53874 * 110.03577 * 174.26014 * 5 4 3 28 28 H 1.09004 * 109.46976 * 299.99749 * 1 2 3 29 29 H 1.08997 * 109.47340 * 59.99863 * 1 2 3 30 30 H 1.08998 * 109.46861 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47080 * 60.00017 * 3 2 1 32 32 H 1.09002 * 109.47027 * 300.00196 * 3 2 1 33 33 H 1.08996 * 109.47156 * 64.47795 * 4 3 2 34 34 H 1.09001 * 109.47472 * 304.46961 * 4 3 2 35 35 H 0.96996 * 119.99863 * 354.59718 * 8 6 5 36 36 H 1.09002 * 109.47613 * 34.99630 * 9 8 6 37 37 H 1.09012 * 109.46859 * 299.99938 * 10 9 8 38 38 H 1.08991 * 109.47533 * 59.99710 * 10 9 8 39 39 H 1.09002 * 109.47177 * 299.99755 * 11 10 9 40 40 H 1.09003 * 109.47865 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47101 * 60.00377 * 12 11 10 42 42 H 0.96996 * 120.00315 * 94.99874 * 13 12 11 43 43 H 0.97000 * 120.00830 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.47626 * 300.00214 * 22 12 11 45 45 H 1.09000 * 109.47687 * 179.97438 * 22 12 11 46 46 H 1.09004 * 109.47435 * 299.99910 * 23 9 8 47 47 H 1.08995 * 109.47101 * 59.99993 * 23 9 8 48 48 H 1.09008 * 110.48294 * 24.21915 * 24 5 4 49 49 H 1.08996 * 110.49215 * 261.57866 * 24 5 4 50 50 H 1.09003 * 110.75438 * 80.37959 * 25 24 5 51 51 H 1.08998 * 110.75592 * 203.74514 * 25 24 5 52 52 H 1.09000 * 110.48237 * 156.62082 * 26 25 24 53 53 H 1.08997 * 110.48621 * 279.26308 * 26 25 24 54 54 H 1.08995 * 110.03737 * 121.42881 * 27 5 4 55 55 H 1.09005 * 110.02838 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1574 2.5780 0.1119 6 6 3.8145 3.3969 -1.1058 7 8 3.2986 4.4870 -0.9779 8 7 4.0810 2.9178 -2.3371 9 6 3.6418 3.6586 -3.5222 10 6 2.1949 3.2849 -3.8500 11 6 1.7364 4.0580 -5.0881 12 6 2.6360 3.7026 -6.2735 13 7 2.1974 4.4434 -7.4589 14 6 1.1904 3.9467 -8.2429 15 1 0.7200 3.0087 -7.9875 16 6 0.7744 4.6488 -9.3657 17 7 1.3474 5.7922 -9.6766 18 14 -0.5987 3.9710 -10.4355 19 1 -1.0718 2.6799 -9.8745 20 1 -1.7243 4.9390 -10.4685 21 1 -0.0910 3.7547 -11.8142 22 6 4.0830 4.0764 -5.9457 23 6 4.5414 3.3036 -4.7078 24 6 3.6458 3.2839 1.3846 25 6 4.8749 4.0718 1.9020 26 6 6.0484 3.1033 1.6125 27 6 5.6850 2.4632 0.2567 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8623 0.7147 -0.9282 34 1 3.8521 0.5760 0.8463 35 1 4.5637 2.0826 -2.4384 36 1 3.7050 4.7289 -3.3258 37 1 2.1317 2.2145 -4.0465 38 1 1.5540 3.5377 -3.0054 39 1 1.7996 5.1284 -4.8921 40 1 0.7056 3.7915 -5.3220 41 1 2.5728 2.6323 -6.4695 42 1 2.6201 5.2857 -7.6884 43 1 1.0571 6.2827 -10.4615 44 1 4.1463 5.1467 -5.7496 45 1 4.7240 3.8228 -6.7900 46 1 5.5723 3.5699 -4.4743 47 1 4.4782 2.2334 -4.9042 48 1 3.3237 2.5508 2.1242 49 1 2.8306 3.9653 1.1414 50 1 4.9973 5.0032 1.3492 51 1 4.7879 4.2646 2.9713 52 1 6.9865 3.6530 1.5356 53 1 6.1143 2.3410 2.3888 54 1 6.1784 2.9998 -0.5537 55 1 5.9832 1.4148 0.2473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265744736.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = -128.160351 kcal Electronic energy + Delta-G solvation = -31080.910115 eV Core-core repulsion = 27115.534980 eV Total energy + Delta-G solvation = -3965.375135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81291 -39.84791 -38.81155 -38.01657 -36.37125 -34.74564 -33.49321 -32.33100 -31.72408 -29.89962 -29.14551 -28.47931 -26.77553 -25.63678 -23.86560 -23.68631 -23.35800 -22.03283 -21.50819 -21.12310 -20.00578 -19.05462 -17.94002 -17.52727 -17.33050 -16.99740 -16.82847 -16.29710 -16.02085 -15.92675 -15.60425 -15.42492 -15.26654 -15.08256 -14.79262 -14.61991 -14.17578 -14.06642 -13.89488 -13.47305 -13.24184 -13.16155 -13.10969 -12.86893 -12.65059 -12.47136 -12.42776 -12.32070 -12.25163 -12.12035 -12.05155 -11.99761 -11.90247 -11.67769 -11.66796 -11.65494 -11.46934 -11.40920 -11.21336 -10.87568 -10.70227 -10.56628 -9.99957 -9.00717 -7.94557 -5.22817 1.45699 1.46497 1.56324 1.64546 2.16241 2.55551 2.70991 3.38306 3.43751 3.59457 3.70113 3.76519 3.84526 3.89059 4.05435 4.07120 4.19809 4.27807 4.34620 4.35158 4.38175 4.45218 4.45671 4.49528 4.51262 4.55211 4.55557 4.57301 4.63594 4.68034 4.81613 4.83358 4.84990 4.96835 4.97534 5.04716 5.06299 5.07409 5.09188 5.11339 5.22463 5.22907 5.25163 5.25512 5.38085 5.47416 5.49709 5.53196 5.56421 5.61984 6.14195 6.28366 6.60582 7.29837 7.33659 8.11067 8.33516 9.29387 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.002548 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.759348 B =10984.784867 C =12214.492175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.056 3.944 4 C -0.096 4.096 5 C -0.071 4.071 6 C 0.520 3.480 7 O -0.581 6.581 8 N -0.711 5.711 9 C 0.153 3.847 10 C -0.109 4.109 11 C -0.122 4.122 12 C 0.174 3.826 13 N -0.739 5.739 14 C -0.234 4.234 15 H 0.075 0.925 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.296 1.296 21 H -0.292 1.292 22 C -0.113 4.113 23 C -0.105 4.105 24 C -0.111 4.111 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.110 4.110 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.414 0.586 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.047 0.953 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.045 0.955 51 H 0.079 0.921 52 H 0.071 0.929 53 H 0.086 0.914 54 H 0.064 0.936 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -13.314 27.110 31.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.021 4.021 4 C -0.134 4.134 5 C -0.074 4.074 6 C 0.308 3.692 7 O -0.460 6.460 8 N -0.362 5.362 9 C 0.048 3.952 10 C -0.148 4.148 11 C -0.163 4.163 12 C 0.065 3.935 13 N -0.379 5.379 14 C -0.366 4.366 15 H 0.093 0.907 16 C -0.271 4.271 17 N -0.623 5.623 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.224 1.224 21 H -0.219 1.219 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.164 4.164 26 C -0.156 4.156 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.098 0.902 52 H 0.090 0.910 53 H 0.105 0.895 54 H 0.083 0.917 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.896 -12.862 27.118 31.603 hybrid contribution -1.249 0.751 -1.296 1.951 sum 8.647 -12.111 25.821 29.802 Atomic orbital electron populations 1.22898 0.79993 1.03879 1.00340 1.87798 1.20919 1.28157 1.95508 1.22645 0.95099 0.84432 0.99895 1.21620 0.91987 0.94425 1.05355 1.21432 0.98808 0.94586 0.92605 1.21029 0.76725 0.86094 0.85357 1.90685 1.45168 1.23209 1.86943 1.45950 1.58555 1.26998 1.04702 1.20802 0.93395 0.96238 0.84777 1.21734 0.96103 1.00594 0.96390 1.22022 0.99687 0.98952 0.95645 1.20471 0.92554 0.95031 0.85399 1.42687 1.42174 1.25350 1.27642 1.19649 1.09957 1.03434 1.03573 0.90735 1.25549 1.02962 0.97853 1.00754 1.69825 1.46387 1.17083 1.28966 0.85115 0.78734 0.77683 0.78526 1.18991 1.22354 1.21936 1.21632 0.95636 1.00003 0.97936 1.21637 0.99140 1.01601 0.91952 1.22421 0.98541 0.99008 0.94861 1.22484 0.94805 0.97951 1.01132 1.22368 0.97864 0.98576 0.96804 1.22263 0.90209 1.03507 0.98740 0.93215 0.94542 0.87985 0.92716 0.95328 0.89613 0.87826 0.74893 0.91957 0.90769 0.93775 0.94385 0.94169 0.93452 0.79734 0.94125 0.93003 0.91397 0.89355 0.89452 0.89120 0.92664 0.93577 0.90245 0.91047 0.89489 0.91720 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.87 10.70 -148.98 -1.59 -9.46 16 3 C 0.06 1.01 5.48 71.98 0.39 1.41 16 4 C -0.10 -1.25 4.18 30.60 0.13 -1.12 16 5 C -0.07 -1.07 0.54 -52.20 -0.03 -1.10 16 6 C 0.52 11.83 5.30 87.66 0.46 12.29 16 7 O -0.58 -18.85 15.06 -3.02 -0.05 -18.90 16 8 N -0.71 -13.84 4.88 -442.54 -2.16 -15.99 16 9 C 0.15 3.86 2.50 44.99 0.11 3.97 16 10 C -0.11 -3.19 5.49 30.59 0.17 -3.02 16 11 C -0.12 -4.58 5.50 30.59 0.17 -4.41 16 12 C 0.17 6.80 2.77 44.99 0.12 6.92 16 13 N -0.74 -37.86 5.12 -322.95 -1.65 -39.52 16 14 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 15 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 16 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 17 N -0.97 -60.57 13.06 21.65 0.28 -60.28 16 18 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 22 C -0.11 -3.54 5.39 30.58 0.16 -3.38 16 23 C -0.10 -2.33 5.39 30.58 0.16 -2.17 16 24 C -0.11 -1.81 4.44 31.67 0.14 -1.67 16 25 C -0.13 -1.87 6.91 31.88 0.22 -1.65 16 26 C -0.12 -1.21 6.83 31.67 0.22 -1.00 16 27 C -0.11 -1.16 6.10 31.32 0.19 -0.96 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.05 0.96 6.76 -2.39 -0.02 0.94 16 32 H 0.03 0.64 7.54 -2.39 -0.02 0.62 16 33 H 0.09 0.96 7.26 -2.39 -0.02 0.94 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.41 5.35 7.79 -92.71 -0.72 4.63 16 36 H 0.06 1.95 7.51 -2.39 -0.02 1.93 16 37 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 42 H 0.37 20.53 7.80 -92.71 -0.72 19.80 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.09 1.14 7.47 -2.38 -0.02 1.12 16 49 H 0.05 1.24 6.91 -2.39 -0.02 1.23 16 50 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.06 0.78 7.67 -2.39 -0.02 0.77 16 55 H 0.10 0.60 7.67 -2.38 -0.02 0.58 16 Total: -1.00 -73.00 421.82 1.45 -71.55 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.59 Total: 34.45 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.18 Total: -10.74 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.53 Total: -115.79 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.64 Total: -28.36 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -73.00 1.45 -71.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265744736.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.612 kcal (2) G-P(sol) polarization free energy of solvation -72.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds