Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00081 * 2 1 4 4 C 1.52996 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.50697 * 110.43773 * 300.70303 * 4 3 2 6 6 O 1.21278 * 120.00333 * 239.30125 * 5 4 3 7 7 N 1.34782 * 119.99796 * 59.29669 * 5 4 3 8 8 C 1.46505 * 119.99893 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47291 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47479 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47210 * 185.07768 * 10 9 8 12 12 H 1.09000 * 109.87465 * 55.93019 * 11 10 9 13 13 C 1.54319 * 109.88332 * 294.91554 * 11 10 9 14 14 C 1.55157 * 102.94446 * 218.23488 * 13 11 10 15 15 C 1.54910 * 101.61429 * 35.48200 * 14 13 11 16 16 N 1.47022 * 110.01169 * 177.03082 * 11 10 9 17 17 C 1.36942 * 125.64517 * 298.46619 * 16 11 10 18 18 H 1.07994 * 120.00302 * 345.38906 * 17 16 11 19 19 C 1.38811 * 119.99781 * 165.39100 * 17 16 11 20 20 N 1.31624 * 120.00205 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99987 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47141 * 89.99834 * 21 19 17 23 23 H 1.48504 * 109.46995 * 210.00085 * 21 19 17 24 24 H 1.48500 * 109.47175 * 329.99768 * 21 19 17 25 25 C 1.54887 * 110.48690 * 63.24514 * 4 3 2 26 26 C 1.55233 * 102.58938 * 156.67474 * 25 4 3 27 27 C 1.54261 * 104.23409 * 322.08481 * 26 25 4 28 28 C 1.53878 * 106.59663 * 23.60992 * 27 26 25 29 29 H 1.09005 * 109.47202 * 59.99626 * 1 2 3 30 30 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47079 * 300.00045 * 1 2 3 32 32 H 1.09002 * 109.46522 * 60.00087 * 3 2 1 33 33 H 1.08997 * 109.46881 * 300.00538 * 3 2 1 34 34 H 0.96992 * 119.99923 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.46712 * 59.99971 * 8 7 5 36 36 H 1.09000 * 109.47036 * 300.00798 * 8 7 5 37 37 H 1.09006 * 109.46837 * 60.00307 * 9 8 7 38 38 H 1.09001 * 109.47151 * 300.00901 * 9 8 7 39 39 H 1.09003 * 109.46764 * 65.08104 * 10 9 8 40 40 H 1.08997 * 109.46695 * 305.08091 * 10 9 8 41 41 H 1.09003 * 110.72006 * 99.87188 * 13 11 10 42 42 H 1.08996 * 110.87547 * 336.67396 * 13 11 10 43 43 H 1.09003 * 111.00699 * 153.57674 * 14 13 11 44 44 H 1.09002 * 111.00729 * 277.39230 * 14 13 11 45 45 H 1.09005 * 110.36503 * 81.84904 * 15 14 13 46 46 H 1.09002 * 110.36490 * 204.16994 * 15 14 13 47 47 H 0.96993 * 120.00003 * 180.02562 * 20 19 17 48 48 H 1.09003 * 110.75940 * 275.06499 * 25 4 3 49 49 H 1.09004 * 110.75915 * 38.43836 * 25 4 3 50 50 H 1.09007 * 110.47196 * 203.39561 * 26 25 4 51 51 H 1.09005 * 110.58535 * 80.83293 * 26 25 4 52 52 H 1.08997 * 110.03112 * 264.32777 * 27 26 25 53 53 H 1.08999 * 110.07567 * 142.91877 * 27 26 25 54 54 H 1.09007 * 110.03181 * 240.71572 * 28 27 26 55 55 H 1.09000 * 110.07554 * 119.31029 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.0035 0.4241 1.2132 6 8 4.7618 0.9477 2.0017 7 7 3.5794 -0.8380 1.4226 8 6 4.0350 -1.5776 2.6023 9 6 3.4110 -2.9745 2.6009 10 6 3.8862 -3.7467 3.8332 11 6 3.3650 -5.1837 3.7670 12 1 3.6814 -5.6500 2.8340 13 6 1.8246 -5.1880 3.8599 14 6 1.5325 -6.4374 4.7323 15 6 2.7282 -6.4166 5.7170 16 7 3.8733 -5.9564 4.9098 17 6 5.1921 -6.2074 5.1802 18 1 5.9409 -6.0374 4.4208 19 6 5.5664 -6.6802 6.4305 20 7 4.6539 -6.8869 7.3563 21 14 7.3654 -7.0219 6.7996 22 1 7.9997 -5.7963 7.3481 23 1 7.4668 -8.1195 7.7948 24 1 8.0600 -7.4217 5.5494 25 6 4.0237 0.4909 -1.2965 26 6 5.4892 0.9889 -1.4153 27 6 5.4300 2.4574 -0.9465 28 6 4.1877 2.5818 -0.0470 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 2.9733 -1.2568 0.7918 35 1 3.7325 -1.0451 3.5041 36 1 5.1212 -1.6651 2.5792 37 1 3.7140 -3.5068 1.6991 38 1 2.3248 -2.8873 2.6236 39 1 3.5064 -3.2636 4.7335 40 1 4.9759 -3.7562 3.8581 41 1 1.3790 -5.2955 2.8709 42 1 1.4624 -4.2834 4.3482 43 1 0.5868 -6.3305 5.2637 44 1 1.5389 -7.3453 4.1291 45 1 2.5355 -5.7203 6.5331 46 1 2.9158 -7.4171 6.1070 47 1 4.9155 -7.2170 8.2300 48 1 3.9889 -0.5934 -1.1910 49 1 3.4345 0.8157 -2.1542 50 1 5.8285 0.9321 -2.4497 51 1 6.1452 0.4077 -0.7672 52 1 5.3361 3.1204 -1.8066 53 1 6.3275 2.7058 -0.3801 54 1 3.4910 3.3053 -0.4706 55 1 4.4816 2.8902 0.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266218777.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = -106.125021 kcal Electronic energy + Delta-G solvation = -30656.111828 eV Core-core repulsion = 26691.692216 eV Total energy + Delta-G solvation = -3964.419612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58583 -39.52404 -38.82012 -37.84332 -36.55887 -34.68158 -33.65846 -31.84840 -31.22519 -29.82352 -29.22842 -27.52312 -26.65925 -25.81278 -25.16481 -23.32329 -22.62173 -21.85102 -21.38192 -20.84507 -20.13253 -18.71049 -18.07951 -17.27337 -17.16678 -16.95873 -16.78575 -16.41482 -16.26664 -16.10638 -15.85635 -15.61114 -15.19739 -15.02670 -14.40467 -14.15350 -14.12409 -13.88543 -13.70085 -13.57123 -13.30885 -13.09536 -12.99020 -12.75596 -12.68885 -12.45124 -12.38241 -12.25246 -12.20693 -12.02891 -11.99881 -11.97128 -11.84361 -11.68098 -11.67028 -11.54103 -11.33895 -11.30305 -11.16029 -10.78429 -10.65735 -10.51540 -10.02670 -8.77393 -7.85760 -5.21254 1.43226 1.45250 1.53267 1.63690 2.22155 2.49575 2.74496 3.32718 3.51049 3.57779 3.68163 3.82453 3.93872 3.99794 4.03159 4.16708 4.24632 4.25914 4.30065 4.35424 4.43276 4.50230 4.54937 4.55919 4.61558 4.63937 4.65744 4.73853 4.79076 4.80808 4.82421 4.85355 4.95240 4.98559 4.99408 5.03315 5.05882 5.12010 5.14656 5.24570 5.26764 5.29237 5.33564 5.45666 5.49759 5.50685 5.56225 5.68304 5.69982 5.80036 6.18933 6.27772 6.66663 7.13003 7.33390 7.82624 8.49870 9.25927 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002471 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.303672 B =11328.877423 C =12773.368643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.080 3.920 4 C -0.081 4.081 5 C 0.519 3.481 6 O -0.591 6.591 7 N -0.705 5.705 8 C 0.124 3.876 9 C -0.104 4.104 10 C -0.111 4.111 11 C 0.153 3.847 12 H 0.035 0.965 13 C -0.110 4.110 14 C -0.137 4.137 15 C 0.175 3.825 16 N -0.619 5.619 17 C -0.231 4.231 18 H 0.075 0.925 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.970 3.030 22 H -0.289 1.289 23 H -0.293 1.293 24 H -0.268 1.268 25 C -0.097 4.097 26 C -0.131 4.131 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.418 0.582 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.064 0.936 45 H -0.010 1.010 46 H 0.030 0.970 47 H 0.246 0.754 48 H 0.069 0.931 49 H 0.105 0.895 50 H 0.088 0.912 51 H 0.038 0.962 52 H 0.090 0.910 53 H 0.049 0.951 54 H 0.099 0.901 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 18.155 -23.306 31.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.003 3.997 4 C -0.084 4.084 5 C 0.306 3.694 6 O -0.472 6.472 7 N -0.358 5.358 8 C 0.000 4.000 9 C -0.142 4.142 10 C -0.151 4.151 11 C 0.047 3.953 12 H 0.053 0.947 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.050 3.950 16 N -0.343 5.343 17 C -0.361 4.361 18 H 0.092 0.908 19 C -0.259 4.259 20 N -0.599 5.599 21 Si 0.799 3.201 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.193 1.193 25 C -0.134 4.134 26 C -0.168 4.168 27 C -0.157 4.157 28 C -0.144 4.144 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.257 0.743 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.008 0.992 46 H 0.048 0.952 47 H 0.055 0.945 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.107 0.893 51 H 0.057 0.943 52 H 0.108 0.892 53 H 0.068 0.932 54 H 0.117 0.883 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.174 18.235 -22.588 30.762 hybrid contribution 1.008 -0.351 1.196 1.602 sum -9.166 17.885 -21.393 29.352 Atomic orbital electron populations 1.22896 0.79072 1.03960 1.00731 1.87685 1.21565 1.27744 1.95570 1.22525 0.89669 0.85415 1.02106 1.21754 0.95593 0.97234 0.93799 1.20907 0.79525 0.81913 0.87036 1.90658 1.37989 1.69519 1.49041 1.46032 1.49130 1.14094 1.26525 1.21225 0.98303 0.92569 0.87930 1.21589 1.01575 0.92627 0.98454 1.21810 0.99724 0.96560 0.97007 1.21199 0.93915 0.90100 0.90134 0.94706 1.22568 0.93724 0.97732 1.00783 1.22882 0.97933 0.98458 0.98226 1.21213 0.85649 0.96739 0.91436 1.44867 1.01871 1.59778 1.27828 1.19293 0.83932 1.36863 0.95982 0.90766 1.25670 1.01399 1.02946 0.95847 1.70150 1.32723 1.52450 1.04530 0.85196 0.80255 0.76942 0.77713 1.21672 1.21975 1.19320 1.22597 0.95856 0.99965 0.95005 1.22476 0.96597 0.95944 1.01816 1.22085 0.97195 0.97050 0.99376 1.22096 0.97614 0.93723 1.00976 0.92339 0.88490 0.94178 0.93469 0.89042 0.74255 0.93414 0.93669 0.90289 0.89414 0.94186 0.94587 0.88504 0.91190 0.90049 0.91693 0.99163 0.95168 0.94499 0.91196 0.87634 0.89342 0.94305 0.89189 0.93227 0.88287 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -5.46 8.01 -148.98 -1.19 -6.66 16 3 C 0.08 1.01 4.70 71.98 0.34 1.35 16 4 C -0.08 -1.38 0.60 -51.86 -0.03 -1.41 16 5 C 0.52 13.69 6.30 87.66 0.55 14.25 16 6 O -0.59 -21.02 15.43 -3.02 -0.05 -21.06 16 7 N -0.70 -16.99 5.02 -463.06 -2.32 -19.31 16 8 C 0.12 3.55 5.67 86.38 0.49 4.04 16 9 C -0.10 -2.73 5.07 30.59 0.16 -2.58 16 10 C -0.11 -4.06 4.70 30.59 0.14 -3.92 16 11 C 0.15 6.04 3.18 45.34 0.14 6.18 16 12 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 13 C -0.11 -3.47 5.59 31.78 0.18 -3.30 16 14 C -0.14 -4.94 7.08 31.99 0.23 -4.71 16 15 C 0.17 8.80 5.41 86.85 0.47 9.27 16 16 N -0.62 -32.09 3.13 -668.17 -2.09 -34.18 16 17 C -0.23 -13.24 9.76 84.03 0.82 -12.42 16 18 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 19 C -0.07 -3.85 5.47 84.86 0.46 -3.38 16 20 N -0.95 -58.82 10.57 21.65 0.23 -58.59 16 21 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 C -0.10 -1.32 5.60 32.01 0.18 -1.14 16 26 C -0.13 -2.03 6.61 31.79 0.21 -1.82 16 27 C -0.12 -1.80 6.80 31.32 0.21 -1.59 16 28 C -0.11 -1.73 5.75 31.32 0.18 -1.55 16 29 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.42 8.19 6.20 -92.71 -0.58 7.61 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.09 1.96 7.56 -2.39 -0.02 1.94 16 39 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 40 H 0.04 1.49 7.91 -2.39 -0.02 1.47 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.10 7.80 -2.39 -0.02 2.08 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H -0.01 -0.54 8.06 -2.38 -0.02 -0.56 16 46 H 0.03 1.72 6.93 -2.39 -0.02 1.70 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.07 1.04 7.63 -2.39 -0.02 1.03 16 49 H 0.11 0.91 8.06 -2.39 -0.02 0.89 16 50 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 52 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.10 1.01 7.84 -2.38 -0.02 0.99 16 55 H 0.06 1.30 6.86 -2.39 -0.02 1.29 16 Total: -1.00 -75.55 421.70 2.84 -72.71 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.26 Total: 18.88 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 5.98 Total: -1.22 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.19 Total: -112.08 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.24 Total: -27.72 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -75.55 2.84 -72.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266218777.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.412 kcal (2) G-P(sol) polarization free energy of solvation -75.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds